57 Commits

Author SHA1 Message Date
denis 4b42c03756 context / gitignore 2026-05-30 08:31:26 +02:00
denis 084c289a95 backup 2026-05-19 11:15:54 +02:00
denis 308ddaa048 export-all-verif 2026-05-19 10:53:51 +02:00
denis 5477de46fe capture 2026-05-17 19:42:49 +02:00
denis adf8d24d14 store summary 2026-05-16 21:44:08 +02:00
denis cb10957fa6 metrics 2026-05-16 12:20:25 +02:00
denis da44ab5340 export 2026-05-15 22:28:34 +02:00
denis 9abede4b4a readme 2026-05-15 19:03:18 +02:00
denis 47ea0a6be2 documentation 2026-05-15 18:55:23 +02:00
denis 6eac697bd2 export 2026-05-15 18:16:46 +02:00
denis dc63da69d9 translate 2026-05-15 16:14:52 +02:00
denis 7760d7ae7c export video/image 2026-05-15 16:14:26 +02:00
denis 4fb7fa8fd3 translate 2026-05-14 17:42:23 +02:00
denis 3c730ecdc0 translate 2026-05-14 17:35:02 +02:00
denis b5b28dd5e1 translate 2026-05-14 17:30:47 +02:00
denis 0bab26c45a translate 2026-05-14 17:10:51 +02:00
denis e9256f538c documentation 2026-05-14 15:59:55 +02:00
denis ed67438739 doc database 2026-05-14 09:19:03 +02:00
denis e1e1174db7 planarian 2026-05-13 13:22:43 +02:00
denis 01acef913b export/import metrics 2026-05-13 13:21:49 +02:00
denis 15c01c483f export csv 2026-05-11 23:04:04 +02:00
denis 13141bc46a experiment 2026-05-10 22:28:13 +02:00
denis 500950017f planarian 2026-05-09 23:02:11 +02:00
denis c7caccd951 scanning 2026-05-09 13:07:42 +02:00
denis 5ba8e04ddf calibration 2026-05-09 09:45:27 +02:00
denis 563069d3c6 tracking 2026-05-08 11:48:46 +02:00
denis 1575445df4 tracking 2026-05-07 11:13:51 +02:00
denis 1bc7e5eb9e simulation 2026-05-06 23:35:31 +02:00
denis 22ec82c895 readme 2026-05-05 23:36:03 +02:00
denis 8b98f39619 simulation 2026-05-05 23:11:15 +02:00
denis ee919ab1cf readme 2026-05-05 22:52:51 +02:00
denis 0fc0d537be readme 2026-05-05 20:03:02 +02:00
denis c28ccdb33c readme 2026-05-05 20:00:02 +02:00
denis dcbcabfce5 readme 2026-05-05 19:48:42 +02:00
denis 3aaa88a1aa simulation 2026-05-05 19:38:41 +02:00
denis d946de7b63 simulation 2026-05-05 14:59:09 +02:00
denis 5c78c042a4 planarian 2026-05-04 23:05:59 +02:00
denis c0c3c37963 metrics 2026-05-04 19:05:40 +02:00
denis 3ecf0a1b6b simulation 2026-05-04 10:32:14 +02:00
denis ebdeb5f651 simulation 2026-05-03 23:11:00 +02:00
denis ce32bee3e8 calibration 2026-05-03 13:24:25 +02:00
denis 0f22451516 simulate 2026-05-03 09:29:08 +02:00
denis 309e2d4f45 planarian 2026-05-02 22:00:41 +02:00
denis 5b4b1e63a6 planarian 2026-05-02 17:26:17 +02:00
denis 3f746b6b3f planarian 2026-05-02 17:19:44 +02:00
denis c16a874ebd export final 2026-05-01 08:34:50 +02:00
denis 4731a8bef8 scanning delayed 2026-04-30 22:28:08 +02:00
denis be1da62dbc scanning delayed 2026-04-30 22:26:51 +02:00
denis b9bcdae282 export 2026-04-30 11:33:30 +02:00
denis f53b8d4932 readme 2026-04-29 12:36:32 +02:00
denis d922102ef5 readme 2026-04-29 12:34:56 +02:00
denis d7e634c96e readme 2026-04-29 11:55:31 +02:00
denis 58307333b9 readme 2026-04-29 11:54:40 +02:00
denis 1aca6bba75 readme 2026-04-29 11:46:53 +02:00
denis 4bde92bd6d readme 2026-04-29 11:21:15 +02:00
denis 94c7cf38f5 readme 2026-04-29 11:02:33 +02:00
denis 22e32cad26 readme 2026-04-29 11:01:13 +02:00
88 changed files with 14733 additions and 3199 deletions
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# ── Secrets & credentials ──────────────────────────────────────────────────
test_tube_scanner/.env
*.pem
*.key
*.crt
*.p12
*.pfx
credentials*.json
secrets*.json
.secrets
# ── Données capturées / exports / backups ──────────────────────────────────
datas/
# ── Python / venv ──────────────────────────────────────────────────────────
.venv/
__pycache__/
*.py[cod]
*.pyo
# ── Django runtime ─────────────────────────────────────────────────────────
*.sqlite3
*.db
test_tube_scanner/staticfiles/
test_tube_scanner/media/
test_tube_scanner/logs/
*.log
# ── Celery ─────────────────────────────────────────────────────────────────
celerybeat-schedule
celerybeat.pid
*.pid
# ── Éditeurs & OS ──────────────────────────────────────────────────────────
.idea/
.vscode/
*.swp
*.swo
*~
.DS_Store
Thumbs.db
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# PlanarianScanner — Contexte technique
Système d'imagerie automatisé pour le suivi comportemental de planaires (*Platyhelminthes*).
Développé par dd@linuxtarn.org pour le **Laboratoire de Biologie, Université Champollion, Albi**.
---
## Matériel cible
| Composant | Détail |
|---|---|
| Carte | Raspberry Pi 4 |
| Caméra | ArduCam haute définition (Picamera2) |
| Motorisation | Bras CNC L2544 piloté en GRBL via port série |
| Grille | 4 plaques multi-puits de 6×4 = 96 puits (Ø 16 mm) |
| Réseau | LAN — export Samba (CIFS) / rsync SSH |
---
## Stack technique
| Couche | Technologie |
|---|---|
| Backend | Django 5.1 + Django Channels (WebSocket) |
| Serveur ASGI | Daphne |
| Broker/cache | Redis |
| Tâches async | Celery + django-celery-beat (one-shot via ClockedSchedule) |
| Vision | OpenCV (headless) + Picamera2 |
| Stockage frames | ReductStore (base time série haute performance) |
| BDD | MariaDB (prod) — sqlite3 (dev) |
| Export distant | Samba client (CIFS) / rsync |
| Plateforme | Raspberry Pi 4, Debian 64-bit Trixie |
| Python | 3.13 — venv dans `.venv/` |
---
## Structure du dépôt
```
PlanarianScanner/
├── etc/ # Scripts d'installation et configs système
│ ├── 1-install-sys.sh # Dépendances système
│ ├── 2-cargo-reductstore-install.sh # Build ReductStore (~15 min sur RPi4)
│ ├── 3-install-samba-client.sh
│ ├── 4-install_mariadb.sh
│ ├── 5-install_adminer.sh
│ ├── 6-install_django_app.sh # Init Django (migrations, fixtures, collectstatic)
│ ├── db/ # Fixtures JSON initiales (configuration, multiwell, well)
│ ├── requirements.txt
│ ├── scanner_service.conf # Supervisor : Django + Celery workers
│ ├── reductstore_service.conf
│ └── nginx_service.conf
├── datas/ # Données hors Django (gitignored)
│ ├── medias/ # Images et vidéos capturées
│ ├── exports/csv/ # Exports CSV EthoVision
│ ├── remote/exports/ # Dossier cible des transferts distants
│ └── backup/mariadb/ # Sauvegardes MariaDB
├── assets/ # Logo, screenshots
├── test_tube_scanner/ # Racine du projet Django
│ ├── home/ # Package projet (settings, urls, wsgi, asgi, celery)
│ ├── scanner/ # App scanner (CNC, multi-puits, sessions, exports)
│ ├── planarian/ # App suivi planaires (métriques, export CSV)
│ ├── modules/ # Modules partagés (capture, GRBL, tracker, metrics…)
│ ├── manage.py
│ ├── run-server.sh
│ ├── run-workers.sh
│ ├── planarian_sim.py # Simulateur standalone (CLI)
│ └── .env / .env.example
└── browser.py # Ouverture navigateur local (utilitaire)
```
---
## Applications Django
### `scanner` — Pilotage CNC et acquisition
Modèles principaux :
| Modèle | Rôle |
|---|---|
| `Configuration` | Config globale active (caméra, GRBL, tracking, calibration) |
| `MultiWell` | Plaque multi-puits (position HG/HD/BG/BD, grille 6×4, pas XY) |
| `Well` | Puit individuel (nom Ai..Di) |
| `WellPosition` | Position XY mm d'un puit dans un MultiWell + px_per_mm |
| `Experiment` | Session de capture sur un MultiWell (durée, début/fin) |
| `Session` | Groupe d'expériences avec planification (ClockedSchedule one-shot) |
| `SessionExperiment` | Liaison Session ↔ Experiment |
| `ExperimentWell` | Liaison Experiment ↔ Well (puits actifs) |
Signaux Django :
- `post_save(MultiWell)` → génère automatiquement les `WellPosition` en serpentin
- `post_save(Session)` → crée les `PeriodicTask` Celery Beat (export + scanning)
- `post_delete(Session)` → supprime les `PeriodicTask` associées
Tâches Celery (`scanner/tasks.py`, `scanner/export_tasks.py`) :
- `run_scanning(session_id)` — parcours serpentin des puits (GRBL + capture)
- `run_session_exports(session_id)` — génération ZIP JPEG + MP4 + transfert distant
### `planarian` — Suivi multi-individus et métriques
Modèle `ExperimentConfig` : paramètres de tracking par puit (px_per_mm, fps, seuils).
---
## Modules partagés (`modules/`)
| Module | Rôle |
|---|---|
| `grbl.py` | Pilotage CNC via port série (G-code, homing, déplacement XY) |
| `grbl_simulator.py` | Simulateur GRBL pour dev sans matériel |
| `capture_interface.py` | Interface abstraite de capture |
| `picamera2_capture.py` | Capture ArduCam via Picamera2 |
| `webcam_capture.py` | Capture webcam via OpenCV |
| `videofile_capture.py` | Lecture fichier vidéo (test/sim) |
| `planarian_tracker.py` | Tracking multi-individus : MOG2 + algorithme hongrois (`scipy`) |
| `planarian_metrics.py` | Métriques par frame et summary (mobilité, thigmo, photo, chemo, social) |
| `tube_aligner.py` | Alignement et calibration optique du tube |
| `circular_crop.py` | Découpe circulaire des images de puit |
| `reductstore.py` | Interface ReductStore (stockage/lecture frames time série) |
| `system_stats.py` | Stats système (CPU, RAM, disque — affichage dashboard) |
---
## Métriques de tracking
**Par frame** : velocity, distance, moving, mobility_state, dist_to_wall_mm, near_wall,
dist_to_light_mm, heading_to_light_deg, fleeing_light, dist_to_food_mm, heading_to_food_deg,
approaching_food, in_food_zone, nearest_neighbour_mm, in_avoid_zone, in_aggreg_zone,
chem_repulsion_level.
**Summary** : totaux et pourcentages EthoVision-compatibles pour mobilité, thigmotactisme,
phototactisme, chimiotactisme, interactions sociales.
Export CSV compatible **EthoVision XT**.
---
## Configuration runtime
Fichier `.env` (python-decouple) dans `test_tube_scanner/` :
```
SECRET_KEY, DEBUG, DOMAIN_SERVER, ALLOWED_HOSTS, CSRF_TRUSTED_ORIGINS
APP_DATAS # chemin relatif vers datas/ (ex: ../datas)
DJANGO_APP # nom de l'app (home)
REDIS_URL # ex: redis://localhost:6379/0
REDUCTSTORE_URL # ex: http://localhost:8383
DB_* # MariaDB credentials
```
---
## Démarrage des services
Tous gérés par **Supervisor** :
```bash
# Interface web Supervisor
http://root:toor@<ip>:9001
# CLI
sudo supervisorctl start|stop|restart reductstore
sudo supervisorctl start|stop|restart test_tube:*
```
En dev :
```bash
cd test_tube_scanner
./manage.py runserver 0.0.0.0:8000
# Workers Celery séparés :
./run-workers.sh
```
Accès réseau : ajouter `<ip-rpi4> scanner.local` dans `/etc/hosts` des clients.
---
## Simulateur standalone
`test_tube_scanner/planarian_sim.py` — simulation CLI d'une arène circulaire (Ø 16 mm, 500×500 px),
export CSV EthoVision par planaire.
```bash
python3 planarian_sim.py --count 5 --thigmotaxis 0.4
python3 planarian_sim.py --count 5 --photo-mode fixed --photo-x 0.2 --photo-y 0.2 --photo-strength 0.6
```
`test_tube_scanner/make_videos.sh` — génération de 24 vidéos de simulation (une par puit).
---
## Licence
GPL-3.0
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---
## Fonctionnalités
### Application 1: Scanner de tube à essais
- Pilotage du bras CNC en GRBL — déplacement automatique puits par puits
- Calibration des multi-puits avec synchro base de données
- Acquisition image haute définition via ArduCam (OpenCV + Picamera2)
@@ -62,12 +64,43 @@ d'analyse distantes.
- Interface administration Django (sqlite3 ou mariadb ou postgresql)
- Suivi de progression des tâches longues par polling
Supporte plusieurs planaires avec paramètres configurables via django ou csv.
Export CSV par planaire compatible EthoVision XT.
### Application 2: Détection de planaires et suivi multi-individus dans un tube.
### Seuils EthoVision par défaut (configurables via django ou csv)
[🎬 Vidéo Simulation planaires](https://youtu.be/pkzClmBp_KM)
- Supporte plusieurs planaires avec paramètres configurables via django ou csv.
- Stratégie :
- Soustraction de fond MOG2 (léger sur Raspberry Pi 4)
- Détection de tous les contours valides (surface >= min_area_px)
- Association frame-à-frame par distance euclidienne minimale
via algorithme hongrois (scipy.optimize.linear_sum_assignment)
- Un état inter-frame indépendant par individu (PlanarianState)
- Retourne une liste de résultats, un par individu suivi
- Export CSV par planaire compatible EthoVision XT.
- Métriques par frame :
- Mobilité : velocity, distance, moving, mobility_state
- Thigmo : dist_to_wall_mm, near_wall
- Photo : dist_to_light_mm, heading_to_light_deg, fleeing_light
- Chemo : dist_to_food_mm, heading_to_food_deg, approaching_food, in_food_zone
- Social : nearest_neighbour_mm, in_avoid_zone, in_aggreg_zone, chem_repulsion_level
- Métriques résumé (summary) :
- Mobilité : movedCenter_pointTotal_mm, velocity_mean_mm_s, durations par état
- Thigmo : thigmotaxis_pct_time_near_wall
- Photo : photo_pct_time_fleeing, photo_mean_dist_mm, photo_latency_s
- Chemo : chemo_pct_time_approaching, chemo_pct_time_in_zone,
chemo_latency_s, chemo_mean_dist_mm
- Social : social_pct_time_avoiding, social_pct_time_aggregating,
social_mean_nn_mm, social_contact_events
- Seuils EthoVision par défaut (configurables via django ou csv)
- **Immobile** : déplacement < 0.2 mm/s
- **Mobile** : 0.2 à 1.5 mm/s
@@ -83,23 +116,43 @@ Export CSV par planaire compatible EthoVision XT.
| MobileFrequency / Duration | mobility_state | mobility_mobile_frequency/duration_s |
| Highly mobileFrequency / Duration | mobility_state | mobility_highly_mobile_frequency/duration_s |
### Métriques calculées
- Distance totale parcourue (mm) → movedCenter-pointTotalmm
- Vitesse instantanée (mm/s) → VelocityCenter-pointMeanmm/s
- Durée cumulée en mouvement (s) → MovementMoving
- Durée cumulée à l'arrêt (s) → MovementNot Moving
- Fréquence et durée par état de mobilité → Mobility state (EthoVision)
- Distance à la paroi (mm) → thigmotactisme
### Comportements
- Comportements
- **Thigmotactisme** : attraction vers la paroi (--thigmotaxis)
- **Phototactisme** : fuite de la lumière (--photo-mode, --photo-strength)
- **Chimiotactisme** : attraction vers une source de nourriture (--chemo-strength)
- **Inter-individus** : évitement de contact, agrégation, répulsion chimique
### Application 4: Simulation de planaires
- planarian_sim.py
Espace circulaire de 16mm de diamètre, 500x500px
Supporte plusieurs planaires avec paramètres configurables via arguments CLI.
Export CSV par planaire compatible EthoVision XT.
Comportements simulés :
- Thigmotactisme : attraction vers la paroi (--thigmotaxis)
- Phototactisme : fuite de la lumière (--photo-mode, --photo-strength)
- Chimiotactisme : attraction vers une source de nourriture (--chemo-strength)
- Inter-individus : évitement de contact, agrégation, répulsion chimique
Usage:
python3 planarian_sim.py [options]
Exemples:
python3 planarian_sim.py --count 5 --thigmotaxis 0.4
python3 planaire_sim.py --count 5 --photo-mode fixed --photo-x 0.2 --photo-y 0.2 --photo-strength 0.6
python3 planarian_sim.py --count 5 --chemo-x 0.7 --chemo-y 0.5 --chemo-strength 0.5
python3 planarian_sim.py --count 5 --avoid-strength 0.6 --aggreg-strength 0.2
- make_videos.sh
- Générateur de vidéos paramétrables
Usage:
- ./make_video.sh (génère le fichier par défaut)
- ./make_video.sh all (génère 24 vidéos pour 24 tubes à essais)
---
## Architecture
@@ -186,7 +239,9 @@ sudo supervisorctl start|stop|restart reductstore
sudo supervisorctl start|stop|restart test_tube:*
Ajouter scanner.local au fichier hosts des clients web:
ip.du.rasp.berry scanner.local
si 10.8.0.100 est l'ip locale du raspberry pi4 le serveur
10.8.0.100 scanner.local
- linux : /etc/hosts
- windows: C:\Windows\System32\drivers\etc\hosts
@@ -199,8 +254,6 @@ ip.du.rasp.berry scanner.local
```bash
PlanarianScanner/
├── assets
│   ├── calibration-auto.jpg
│   ├── calibration-auto.mp4
│   ├── calibration-auto.png
│   └── logo.png
├── browser.py
@@ -222,7 +275,6 @@ PlanarianScanner/
│   ├── scanner_service.conf
│   └── supervisor-inet_http.conf
├── LICENSE
├── logo.png
├── README.md
└── test_tube_scanner
├── home
@@ -315,11 +367,13 @@ PlanarianScanner/
## Procédure de calibration en 4 étapes
1. Activer "Debug détection" → voir le cercle et les zones sur le stream
2. Activer recadrage pour isoler le tube
Calibration auto
![Aperçu de la vidéo](assets/calibration-auto.png) Calibration auto
![Vidéo Calibration auto 🎬](https://www.linuxtarn.org/media/original_videos/calibration-auto.mp4) Vidéo Calibration auto
[🎬 Vidéo Calibration auto](https://youtu.be/6RueJ3onUoY)
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# ![Planarians](assets/logo.png) PlanarianScanner
> Automated imaging system for behavioral tracking of planarians
> (C) dd@linuxtarn.org for the Biology Laboratory, Champollion University, Albi
---
## Overview
**PlanarianScanner** is a web application developed for monitoring the activity
and movements of **planarians** (*Platyhelminthes*) in laboratory research.
The system controls a motorized multi-well scanner composed of a CNC arm (GRBL)
and a high-definition ArduCam camera mounted on a Raspberry Pi 4. It enables
automated image acquisition on a **6×4 wells × 4 plates** grid,
high-performance storage of captures, and export to remote analysis machines.
---
## Hardware
| Component | Details |
|---|---|
| Board | Raspberry Pi 4 |
| Camera | High-definition ArduCam |
| Motion system | CNC arm (L2544) controlled by GRBL |
| Well grid | 6×4 × 4 multi-well plates |
| Network | Local LAN — Samba/rsync export |
---
## Technical Stack
| Layer | Technology |
|---|---|
| Backend | Django + Django Channels |
| Real-time | Redis (broker + channel layer) |
| Acquisition | OpenCV + Picamera2 |
| Storage | ReductStore (high-performance time series) |
| Asynchronous tasks | Celery + django-celery-beat |
| Export | Samba (CIFS), rsync/SSH |
| Platform | Raspberry Pi 4 — Debian Linux |
---
## Features
### Application 1: Test Tube Scanner
- CNC arm control through GRBL — automatic well-by-well movement
- Multi-well calibration with database synchronization
- High-definition image acquisition via ArduCam (OpenCV + Picamera2)
- Frame storage in ReductStore time-series database
- Configurable scan sessions (full grid or selected wells)
- Asynchronous export (Celery):
- ZIP archive of JPEG images per session
- MP4 video generated from captured frames
- Automatic transfer of exports to remote machines (Linux / Windows)
- Nightly export scheduling via django-celery-beat
- Real-time web interface (Django Channels / WebSocket)
- Django administration interface (sqlite3 or mariadb or postgresql)
- Long-task progress tracking through polling
### Application 2: Planarian Detection and Multi-Individual Tracking in a Tube
[🎬 Planarian Simulation Video](https://youtu.be/pkzClmBp_KM)
- Supports multiple planarians with configurable parameters via Django or CSV.
- Strategy:
- MOG2 background subtraction (lightweight on Raspberry Pi 4)
- Detection of all valid contours (surface >= min_area_px)
- Frame-to-frame association using minimum Euclidean distance
via the Hungarian algorithm (scipy.optimize.linear_sum_assignment)
- Independent inter-frame state per individual (PlanarianState)
- Returns a list of results, one for each tracked individual
- Per-planarian CSV export compatible with EthoVision XT.
- Metrics per frame:
- Mobility : velocity, distance, moving, mobility_state
- Thigmo : dist_to_wall_mm, near_wall
- Photo : dist_to_light_mm, heading_to_light_deg, fleeing_light
- Chemo : dist_to_food_mm, heading_to_food_deg, approaching_food, in_food_zone
- Social : nearest_neighbour_mm, in_avoid_zone, in_aggreg_zone, chem_repulsion_level
- Summary metrics:
- Mobility : movedCenter_pointTotal_mm, velocity_mean_mm_s, state durations
- Thigmo : thigmotaxis_pct_time_near_wall
- Photo : photo_pct_time_fleeing, photo_mean_dist_mm, photo_latency_s
- Chemo : chemo_pct_time_approaching, chemo_pct_time_in_zone,
chemo_latency_s, chemo_mean_dist_mm
- Social : social_pct_time_avoiding, social_pct_time_aggregating,
social_mean_nn_mm, social_contact_events
- Default EthoVision thresholds (configurable via Django or CSV)
- **Immobile** : movement < 0.2 mm/s
- **Mobile** : 0.2 to 1.5 mm/s
- **Highly mobile** : > 1.5 mm/s
| EthoVision | CSV frames | CSV summary |
|---|---|---|
| movedCenter-pointTotalmm | total_distance_mm | movedCenter_pointTotal_mm |
| VelocityCenter-pointMeanmm/s | velocity_mm_s | velocity_mean_mm_s |
| MovementMoving | moving, duration_moving_s | movement_moving_duration_s |
| MovementNot Moving | duration_stopped_s | movement_not_moving_duration_s |
| ImmobileFrequency / Duration | mobility_state | mobility_immobile_frequency/duration_s |
| MobileFrequency / Duration | mobility_state | mobility_mobile_frequency/duration_s |
| Highly mobileFrequency / Duration | mobility_state | mobility_highly_mobile_frequency/duration_s |
- Behaviors
- **Thigmotaxis** : wall attraction (--thigmotaxis)
- **Phototaxis** : fleeing from light (--photo-mode, --photo-strength)
- **Chemotaxis** : attraction toward a food source (--chemo-strength)
- **Inter-individuals** : contact avoidance, aggregation, chemical repulsion
### Application 4: Planarian Simulation
- planarian_sim.py
Circular space of 16 mm diameter, 500x500 px
Supports multiple planarians with configurable parameters via CLI arguments.
Per-planarian CSV export compatible with EthoVision XT.
Simulated behaviors:
- Thigmotaxis : wall attraction (--thigmotaxis)
- Phototaxis : fleeing from light (--photo-mode, --photo-strength)
- Chemotaxis : attraction toward a food source (--chemo-strength)
- Inter-individual : contact avoidance, aggregation, chemical repulsion
Usage:
python3 planarian_sim.py [options]
Examples:
python3 planarian_sim.py --count 5 --thigmotaxis 0.4
python3 planarian_sim.py --count 5 --photo-mode fixed --photo-x 0.2 --photo-y 0.2 --photo-strength 0.6
python3 planarian_sim.py --count 5 --chemo-x 0.7 --chemo-y 0.5 --chemo-strength 0.5
python3 planarian_sim.py --count 5 --avoid-strength 0.6 --aggreg-strength 0.2
- make_videos.sh
- Configurable video generator
Usage:
- ./make_video.sh (generates the default file)
- ./make_video.sh all (generates 24 videos for 24 test tubes)
---
## Architecture
```text
Raspberry Pi 4
├── Django (web interface + API)
│ ├── Django Channels ←→ Redis (real-time WebSocket)
│ └── Celery workers
│ ├── scanning(session_id) — well traversal
│ ├── export_images_zip() — JPEG ZIP generation
│ ├── export_video_mp4() — MP4 generation (OpenCV)
│ └── transfer → /mnt/exports — Samba share
├── ArduCam ← Picamera2 / OpenCV — HD capture
├── CNC GRBL ← Serial — XY movement
└── ReductStore — frame time-series storage
Installation
Full documentation coming soon.
Using piImager, install Raspberry Pi OS 64-bit Trixie on the Raspberry Pi 4.<br>
Customize your Raspberry Pi with at least SSH enabled (SSH key or password).<br>
Later, for convenience, you may install a VNC server.
ssh rpi4@ip.of.raspi
git clone https://github.com/your-repo/planarianscanner.git
git@github.com:deunix-educ/PlanarianScanner.git
# modify environment variables if needed
cp .env.example .env
# Edit .env : SECRET_KEY, REDIS_URL, REDUCTSTORE_URL, ...
cd PlanarianScanner/etc
chmod +x *.sh
# install system libraries
./1-install-sys.sh
# compile reductstore (~15 min on Raspberry Pi 4)
./2-cargo-reductstore-install.sh
# install samba client
./3-install-samba-client.sh
# install mariadb
./4-install_mariadb.sh
# install adminer
./5-install_adminer.sh
# Configure Django applications
./6-install_django_app.sh
# test
sudo supervisorctl stop test_tube:*
./manage.py runserver 0.0.0.0:8000
# local test
# http://127.0.0.1:8000
# remote test
# http://ip.of.raspi:8000
# end of test
sudo supervisorctl restart test_tube:*
Starting services:
All services are accessible through supervisor
http://root:toor@ip-of-raspi:9001
or
sudo supervisorctl start|stop|restart reductstore
sudo supervisorctl start|stop|restart test_tube:*
Add scanner.local to the hosts file on web clients:
if 10.8.0.100 is the Raspberry Pi 4 local IP address of the server
10.8.0.100 scanner.local
- linux : /etc/hosts
- windows: C:\Windows\System32\drivers\etc\hosts
- mac : /private/etc/hosts
Repository Organization
PlanarianScanner/
├── assets
│ ├── calibration-auto.png
│ └── logo.png
├── browser.py
├── etc
│ ├── 1-install-sys.sh
│ ├── 2-cargo-reductstore-install.sh
│ ├── 3-install-samba-client.sh
│ ├── 4-install_mariadb.sh
│ ├── 5-install_adminer.sh
│ ├── 6-install_django_app.sh
│ ├── db
│ │ ├── configuration.json
│ │ ├── multiwell.json
│ │ └── well.json
│ ├── install-linux-samba-server.sh
│ ├── nginx_service.conf
│ ├── reductstore_service.conf
│ ├── requirements.txt
│ ├── scanner_service.conf
│ └── supervisor-inet_http.conf
├── LICENSE
├── README.md
└── test_tube_scanner
├── home
│ ├── apps.py
│ ├── asgi.py
│ ├── celerymodule.py
│ ├── context_processors.py
│ ├── __init__.py
│ ├── locale
│ ├── management
│ ├── middleware.py
│ ├── __pycache__
│ ├── settings.py
│ ├── static
│ ├── templates
│ ├── templatetags
│ ├── urls.py
│ ├── views.py
│ └── wsgi.py
├── logs
│ ├── celery.log
│ └── test_tube.log
├── manage.py
├── media
│ ├── images
│ └── simulation
├── modules
│ ├── capture_interface.py
│ ├── circular_crop.py
│ ├── grbl.py
│ ├── __init__.py
│ ├── picamera2_capture_basic.py
│ ├── picamera2_capture.py
│ ├── planarian_metrics.py
│ ├── planarian_tracker.py
│ ├── __pycache__
│ ├── reductstore.py
│ ├── system_stats.py
│ ├── tube_aligner.py
│ ├── utils.py
│ ├── videofile_capture.py
│ └── webcam_capture.py
├── planarian
│ ├── admin.py
│ ├── apps.py
│ ├── forms.py
│ ├── __init__.py
│ ├── migrations
│ ├── models.py
│ ├── __pycache__
│ ├── templates
│ ├── tests.py
│ ├── urls.py
│ └── views.py
├── run-workers.sh
├── scanner
│ ├── admin.py
│ ├── apps.py
│ ├── constants.py
│ ├── consumers.py
│ ├── export_tasks.py
│ ├── __init__.py
│ ├── migrations
│ ├── models.py
│ ├── multiwell.py
│ ├── process.py
│ ├── __pycache__
│ ├── routing.py
│ ├── static
│ ├── tasks.py
│ ├── templates
│ ├── templatetags
│ ├── tests.py
│ ├── urls.py
│ └── views.py
├── staticfiles
│ ├── admin
│ ├── css
│ ├── img
│ ├── js
│ ├── scanner
│ └── webfonts
└── templates
└── admin
4-Step Calibration Procedure
Enable "Detection Debug" → display the circle and zones on the stream
Enable cropping to isolate the tube
## Status
![status](https://img.shields.io/badge/statut-en%20développement-orange)
![platform](https://img.shields.io/badge/plateforme-Raspberry%20Pi%204-red)
![python](https://img.shields.io/badge/python-3.11%2B-blue)
![django](https://img.shields.io/badge/django-4.2%2B-green)
![license](https://img.shields.io/badge/licence-GPL3-lightgrey)
---
## License
GPL-3.0 — Open-source project, developed for sharing and scientific reproducibility.
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+1 -1
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@@ -1,4 +1,4 @@
!/bin/bash
#!/bin/bash
echo "==== System installation for rpi"
echo
+2 -2
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@@ -1,4 +1,4 @@
!/bin/bash
#!/bin/bash
echo "--- install reductstore"
echo " machine raspberry pi4"
echo " Compilation finished `release` profile [optimized] target(s) in 16m 31s"
@@ -11,4 +11,4 @@ cargo --version
rustc --version
cargo install reductstore
mkdir -p $HOME/medias
mkdir -p $HOME/reduct-media
+2
View File
@@ -50,6 +50,8 @@ sudo bash -c "echo '//$samba_server/$public_share /mnt/samba/public cifs guest,u
echo "Montage des partages Samba..."
sudo mount -a
sudo mkdir -p /mnt/samba/public/images /mnt/samba/public/videos
# Vérification du montage
echo "Vérification des partages montés :"
df -h | grep samba
+1 -2
View File
@@ -3,8 +3,7 @@
# Script d'installation et de configuration de MariaDB
# Utilisation : source mariadb_config.sh && ./install_mariadb.sh
ENV_FILE="../test_tube_scanner/.env"
source $ENV_FILE
source ../test_tube_scanner/.env
# Vérifie que le fichier de configuration est sourcé
if [ -z "$DATABASE_ROOT_PASSWORD" ] || [ -z "$DATABASE_NAME" ] || [ -z "$DATABASE_USER" ] || [ -z "$DATABASE_PASSWORD" ]; then
+2 -2
View File
@@ -1,8 +1,8 @@
[program:reductstore]
process_name=%(program_name)s
priority=10
environment=RS_DATA_PATH="/home/rpi4/medias"
directory=/home/rpi4/medias
environment=RS_DATA_PATH="/home/rpi4/reduct-media"
directory=/home/rpi4/reduct-media
command=/home/rpi4/.cargo/bin/reductstore
user=rpi4
group=rpi4
+1
View File
@@ -19,4 +19,5 @@ opencv-python-headless
mysqlclient
psycopg2
pyserial
scipy
+7 -5
View File
@@ -4,12 +4,14 @@ programs=webUI,planification,services
[program:webUI]
process_name=%(program_name)s
priority=500
directory=/home/rpi4/PlanarianScanner/test_tube_scanner
command=
/home/rpi4/PlanarianScanner/.venv/bin/daphne
-b 0.0.0.0
-p 8000
home.asgi:application
command=/home/rpi4/PlanarianScanner/test_tube_scanner/run-server.sh
# /home/rpi4/PlanarianScanner/.venv/bin/daphne
# -b 0.0.0.0
# -p 8000
# home.asgi:application
user=rpi4
group=rpi4
stopasgroup=true
+6 -2
View File
@@ -19,6 +19,8 @@ APP_DATAS=test_tube_scanner
EXPORTS_LOCAL_PATH=/home/rpi4/exports
EXPORT_REMOTE_PATH=/mnt/exports
REDUCTSTORE_PATH=/home/rpi4/medias
CSV_EXPORT_DIR=/home/rpi4/exports/csv
BACKUP_DIR=/home/rpi4/backup/mariadb
####
# django email
@@ -39,12 +41,14 @@ SECRET_KEY="django-insecure-0)4_w=pjv1ex7=s=c=ii3g@fx_=8fb=hxk€3bpk1)uj(0ph0t)
USER=rpi4
GROUP=rpi4
DOMAIN_SERVER=scanner.local
ALLOWED_HOSTS=127.0.0.1,localhost
CSRF_TRUSTED_ORIGINS=http://127.0.0.1:8000,http://localhost:8000
ALLOWED_HOSTS=127.0.0.1,localhost,scanner.local,192.168.250.230,192.168.1.200
CSRF_TRUSTED_ORIGINS=http://127.0.0.1:8000,http://localhost:8000,http://scanner.local,http://192.168.1.200:8000,http://192.168.250.230:8000
####
# server app
LOCAL_IP_SERVER=192.168.1.200
SERVER_HOST_IP=0.0.0.0
SERVER_HOST_PORT=8000
+61
View File
@@ -0,0 +1,61 @@
'''
Created on 18 mai 2026
@author: denis
'''
from pathlib import Path
from datetime import datetime
import subprocess
import gzip
import shutil
from django.conf import settings
BACKUP_DIR = Path(settings.BACKUP_DIR)
def mariadb_backup():
BACKUP_DIR.mkdir(parents=True, exist_ok=True)
db = settings.DATABASES["default"]
db_name = db["NAME"]
db_user = db["USER"]
db_password = db["PASSWORD"]
db_host = db.get("HOST", "localhost")
db_port = str(db.get("PORT", 3306))
timestamp = datetime.now().strftime("%Y%m%d_%H%M%S")
sql_file = BACKUP_DIR / f"{db_name}_{timestamp}.sql"
gz_file = BACKUP_DIR / f"{db_name}_{timestamp}.sql.gz"
cmd = [
"mariadb-dump",
"--single-transaction",
"--quick",
"--routines",
"--triggers",
"-h", db_host,
"-P", db_port,
"-u", db_user,
f"-p{db_password}",
db_name,
]
with open(sql_file, "wb") as f:
result = subprocess.run(
cmd,
stdout=f,
stderr=subprocess.PIPE,
check=True,
)
with open(sql_file, "rb") as f_in:
with gzip.open(gz_file, "wb") as f_out:
shutil.copyfileobj(f_in, f_out)
sql_file.unlink()
return str(gz_file)
+12
View File
@@ -0,0 +1,12 @@
'''
Created on 18 mai 2026
@author: denis
'''
from celery import shared_task
from .services import mariadb_backup
@shared_task
def backup_mariadb_task():
path = mariadb_backup()
return {"status": "ok", "backup": path, }
+3
View File
@@ -8,3 +8,6 @@ os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'home.settings')
appc = Celery('home')
appc.config_from_object('django.conf:settings', namespace='CELERY')
appc.autodiscover_tasks()
worker_prefetch_multiplier = 1
task_acks_late = True
File diff suppressed because it is too large Load Diff
File diff suppressed because it is too large Load Diff
@@ -7,7 +7,6 @@ from django.core.management.base import BaseCommand
from scanner import tasks as scanner_tasks
class Command(BaseCommand):
help = "Démarre les tâches Celery."
@@ -18,9 +17,9 @@ class Command(BaseCommand):
def handle(self, *args, **options): # @UnusedVariable
#task = options['task']
try:
scanner_tasks.scanner_start.delay() # @UndefinedVariable
scanner_tasks.replay_start.delay() # @UndefinedVariable
except Exception as e:
print(e)
+33 -9
View File
@@ -21,8 +21,6 @@ print("Django BASE_DIR:", BASE_DIR)
PACKAGE_DIR = BASE_DIR.parent
APP_DATAS = PACKAGE_DIR / config('APP_DATAS')
# Quick-start development settings - unsuitable for production
# See https://docs.djangoproject.com/en/5.0/howto/deployment/checklist/
@@ -61,6 +59,7 @@ INSTALLED_APPS = [
'django_celery_results',
'celery',
'home',
'backup',
'scanner',
'planarian',
@@ -216,12 +215,11 @@ LOCALE_PATHS = (
STATIC_URL = '/static/'
STATIC_ROOT = APP_DATAS / 'staticfiles'
print("Django application STATIC_ROOT:", STATIC_ROOT)
MEDIA_URL = '/media/'
MEDIA_ROOT = APP_DATAS / 'media'
print("Django application MEDIA_ROOT:", MEDIA_ROOT)
print("Django application MEDIA_ROOT:", MEDIA_ROOT, "\nDjango application STATIC_ROOT:", STATIC_ROOT)
"""
@@ -241,6 +239,7 @@ DEFAULT_AUTO_FIELD = 'django.db.models.BigAutoField'
LOGGING_FILE = config('LOGGING_FILE')
IS_LOGGING = config('IS_LOGGING', cast=bool)
IS_LOGGING = False
LOGGING = None if not IS_LOGGING else {
'version': 1,
@@ -347,6 +346,7 @@ DJANGO_CELERY_BEAT_TZ_AWARE = False
CELERY_ENABLE_UTC = True
CELERY_TASK_TRACK_STARTED = True
CELERY_TASK_TIME_LIMIT = 30 * 60
CELERY_TASK_SOFT_TIME_LIMIT = 20 * 60
CELERY_BEAT_SCHEDULER = 'django_celery_beat.schedulers:DatabaseScheduler'
CELERY_ACCEPT_CONTENT = ['application/json']
CELERY_RESULT_SERIALIZER = 'json'
@@ -356,6 +356,18 @@ CELERY_RESULT_EXTENDED = True
CELERY_RESULT_BACKEND = 'django-db'
DJANGO_CELERY_RESULTS_TASK_ID_MAX_LENGTH=191
from celery.schedules import crontab
CELERY_BEAT_SCHEDULE = {
"mariadb-backup-every-night": {
"task": "backup.tasks.backup_mariadb_task",
"schedule": crontab(hour=2, minute=0),
},
}
## reductstore
#
REDUCTSTORE_TOKEN = config('REDUCTSTORE_TOKEN')
@@ -364,6 +376,8 @@ REDUCTSTORE_PORT = config('REDUCTSTORE_PORT', cast=int)
REDUCTSTORE_URL = f'http://{REDUCTSTORE_HOST}:{REDUCTSTORE_PORT}'
REDUCTSTORE_PATH = config("REDUCTSTORE_PATH")
BACKUP_DIR = config('BACKUP_DIR')
## servers app
#
USER = config('USER')
@@ -371,6 +385,8 @@ GROUP = config('GROUP')
SERVER_HOST_PORT = config('SERVER_HOST_PORT', cast=int)
SERVER_HOST_IP = config('SERVER_HOST_IP')
LOCAL_IP_SERVER = config('LOCAL_IP_SERVER')
# ws
SCANNER_WEBSOCKET_ROUTE = 'ws/scanner'
REPLAY_WEBSOCKET_ROUTE = 'ws/replay'
@@ -385,20 +401,28 @@ DATETIME_FORMAT = '%d-%m-%Y-%m %H:%M:%S'
#===========================
# default configuration
#
#===========================
# rpicam 4056x3040 2028x1080 2028x1520
#===========================
GRBL_SIMULATION = True
EXPORTS_LOCAL_PATH = config("EXPORTS_LOCAL_PATH")
EXPORT_REMOTE_PATH = config("EXPORT_REMOTE_PATH")
EXPORT_DESTINATIONS = ["local", "remote"]
#EXPORT_DESTINATIONS = ["remote"] # only remote
TEST_VIDEOFILE = False
CSV_EXPORT_DIR = config("CSV_EXPORT_DIR") # ou None pour mémoire uniquement
TRACKING = True
## tracker default parameters
#
TRACKER_TUBE_AXIS = "vertical"
TRACKER_MIN_AREA = 200
TRACKER_MIN_AREA = 20 # surface min planaire px x px
TRACKER_MAX_AREA_RATIO = 0.1 # 5% de la frame = surface max acceptable
TRACKER_MAX_PLANARIANS = 4
TRACKER_MERGE_KERNEL_SIZE = 15 # augmenter si fragments résiduels
TRACKER_MIN_CONTOUR_DIST_PX = 40 # augmenter si IDs multiples persistent
CALIBRATION_AUTO_DURATION = 45.0
CALIBRATION_AUTO_TIMEOUT = 2.5
@@ -0,0 +1,98 @@
/* ============================================================
doc_calibration.css
Styles spécifiques à la page de calibration du scanner.
Dépend de doc_database.css (variables, composants de base).
============================================================ */
/* ─── Badge teal ─── */
.badge-teal {
background: rgba(45,212,191,.12);
color: var(--accent-teal);
border: 1px solid rgba(45,212,191,.3);
}
/* ─── Badge blue ─── */
.badge-blue {
background: rgba(88,166,255,.12);
color: var(--accent-blue);
border: 1px solid rgba(88,166,255,.3);
}
/* ─── Tag teal ─── */
.tag-teal {
background: rgba(45,212,191,.12);
color: var(--accent-teal);
border: 1px solid rgba(45,212,191,.2);
}
/* ─── Schéma des 3 zones de l'écran ─── */
.screen-layout {
display: grid;
grid-template-columns: 1fr 2fr 1fr;
gap: 8px;
margin-bottom: 24px;
border: 1px solid var(--border);
border-radius: var(--radius);
overflow: hidden;
background: var(--bg-card);
}
.screen-zone {
display: flex;
flex-direction: column;
align-items: center;
justify-content: center;
gap: 8px;
padding: 20px 10px;
font-size: 12px;
font-weight: 600;
color: var(--text-secondary);
text-align: center;
border-right: 1px solid var(--border);
transition: background .15s;
}
.screen-zone:last-child { border-right: none; }
.screen-zone i { font-size: 20px; }
.zone-left { color: var(--accent-indigo); }
.zone-left i { color: var(--accent-indigo); }
.zone-center {
background: rgba(45,212,191,.04);
color: var(--accent-teal);
}
.zone-center i { font-size: 26px; color: var(--accent-teal); }
.zone-right { color: var(--accent-orange); }
.zone-right i { color: var(--accent-orange); }
/* ─── Barre visuelle des seuils de centrage ─── */
.center-bar {
display: flex;
margin-top: 12px;
border-radius: var(--radius-sm);
overflow: hidden;
height: 28px;
font-size: 11px;
font-weight: 700;
}
.cb-seg {
flex: 1;
display: flex;
align-items: center;
justify-content: center;
}
.cb-red { background: rgba(248,81,73,.18); color: var(--accent-red); border: 1px solid rgba(248,81,73,.3); }
.cb-yellow { background: rgba(227,179,65,.18); color: var(--accent-yellow); border: 1px solid rgba(227,179,65,.3); }
.cb-green { background: rgba(63,185,80,.18); color: var(--accent-green); border: 1px solid rgba(63,185,80,.3); }
/* ─── Responsive ─── */
@media (max-width: 768px) {
.screen-layout {
grid-template-columns: 1fr;
}
.screen-zone {
border-right: none;
border-bottom: 1px solid var(--border);
padding: 14px;
}
.screen-zone:last-child { border-bottom: none; }
}
@@ -0,0 +1,521 @@
/* ============================================================
doc_database.css
Feuille de style de la documentation base de données
Dépendances : w3.css, all.css (Font Awesome)
Fond sombre, style industriel/technique
============================================================ */
/* ─── Variables globales ─── */
:root {
--bg-base: #0d1117;
--bg-surface: #161b22;
--bg-card: #1c2128;
--bg-card-hover: #21262d;
--border: #30363d;
--border-strong: #484f58;
--text-primary: #e6edf3;
--text-secondary: #8b949e;
--text-muted: #6e7681;
--text-code: #79c0ff;
--accent-blue: #58a6ff;
--accent-cyan: #39d353;
--accent-green: #3fb950;
--accent-teal: #2dd4bf;
--accent-orange: #f0883e;
--accent-yellow: #e3b341;
--accent-red: #f85149;
--accent-purple: #bc8cff;
--accent-indigo: #818cf8;
--nav-width: 240px;
--header-h: 90px;
--radius: 8px;
--radius-sm: 4px;
--shadow: 0 4px 16px rgba(0,0,0,.4);
--font-mono: 'JetBrains Mono', 'Fira Code', 'Consolas', monospace;
--font-body: 'Segoe UI', system-ui, sans-serif;
}
/* ─── Reset minimal ─── */
*, *::before, *::after { box-sizing: border-box; }
a { color: var(--accent-blue); text-decoration: none; }
/*a:hover { text-decoration: underline; }*/
ul { padding: 0; margin: 0; list-style: none; }
/* ─── Mise en page principale ─── */
.doc-wrapper {
display: grid;
grid-template-columns: var(--nav-width) 1fr;
grid-template-rows: auto 1fr;
grid-template-areas:
"header header"
"sidenav content";
min-height: 100vh;
background: var(--bg-base);
color: var(--text-primary);
font-family: var(--font-body);
font-size: 14px;
line-height: 1.6;
}
/* ─── En-tête ─── */
.doc-header {
grid-area: header;
background: linear-gradient(135deg, #1a2236 0%, #0d1117 60%, #1a1a2e 100%);
border-bottom: 1px solid var(--border-strong);
padding: 20px 28px;
}
.doc-header-inner {
display: flex;
align-items: center;
gap: 18px;
max-width: 1200px;
}
.doc-header-icon {
width: 52px; height: 52px;
background: linear-gradient(135deg, var(--accent-blue), var(--accent-indigo));
border-radius: var(--radius);
display: flex; align-items: center; justify-content: center;
font-size: 22px;
color: #fff;
flex-shrink: 0;
box-shadow: 0 4px 12px rgba(88,166,255,.3);
}
.doc-title {
margin: 0;
font-size: 22px;
font-weight: 700;
color: var(--text-primary);
}
.doc-subtitle {
margin: 2px 0 0;
font-size: 13px;
color: var(--text-secondary);
}
/* ─── Navigation latérale ─── */
.doc-sidenav {
grid-area: sidenav;
background: var(--bg-surface);
border-right: 1px solid var(--border);
padding: 20px 0;
position: sticky;
top: 0;
height: 100vh;
overflow-y: auto;
}
.nav-section-label {
font-size: 11px;
font-weight: 700;
text-transform: uppercase;
letter-spacing: .08em;
color: var(--text-muted);
padding: 0 16px 8px;
margin: 0;
}
.nav-link {
display: flex;
align-items: center;
gap: 8px;
padding: 7px 16px;
color: var(--text-secondary);
font-size: 13px;
transition: all .15s;
border-left: 2px solid transparent;
}
.nav-link:hover {
color: var(--text-primary);
background: var(--bg-card);
text-decoration: none;
}
.nav-link.active {
color: var(--accent-blue);
border-left-color: var(--accent-blue);
background: rgba(88,166,255,.08);
}
.nav-link.nav-sub {
padding-left: 28px;
font-size: 12.5px;
}
.nav-link.nav-sub-2 {
padding-left: 42px;
font-size: 12px;
}
/* ─── Contenu principal ─── */
.doc-content {
grid-area: content;
padding: 28px 32px;
max-width: 1100px;
}
/* ─── Sections ─── */
.doc-section {
margin-bottom: 48px;
}
.subsection {
margin-top: 32px;
padding-top: 24px;
border-top: 1px solid var(--border);
}
.sub-subsection {
margin-top: 24px;
}
.section-header {
margin-bottom: 20px;
}
.section-header h2 {
margin: 6px 0 6px;
font-size: 20px;
font-weight: 700;
color: var(--text-primary);
display: flex;
align-items: center;
gap: 10px;
}
.section-desc {
margin: 0;
color: var(--text-secondary);
font-size: 13px;
}
.subsection-title {
font-size: 16px;
font-weight: 600;
margin: 0 0 14px;
color: var(--text-primary);
display: flex;
align-items: center;
gap: 8px;
}
.table-title {
font-size: 14px;
font-weight: 600;
margin: 0 0 12px;
color: var(--text-primary);
display: flex;
align-items: center;
gap: 8px;
flex-wrap: wrap;
}
.table-desc {
color: var(--text-secondary);
font-weight: 400;
font-size: 12.5px;
}
/* ─── Badges de section ─── */
.section-badge {
display: inline-block;
font-size: 10px;
font-weight: 700;
text-transform: uppercase;
letter-spacing: .06em;
padding: 2px 8px;
border-radius: 20px;
margin-bottom: 6px;
}
.badge-time { background: rgba(57,211,83,.12); color: var(--accent-green); border: 1px solid rgba(57,211,83,.3); }
.badge-orange { background: rgba(240,136,62,.12); color: var(--accent-orange); border: 1px solid rgba(240,136,62,.3);}
/* ─── Ligne de cartes ─── */
.info-row {
display: flex;
gap: 14px;
flex-wrap: wrap;
margin-bottom: 14px;
}
/* ─── Cartes d'information ─── */
.info-card {
background: var(--bg-card);
border: 1px solid var(--border);
border-radius: var(--radius);
padding: 16px;
display: flex;
gap: 14px;
flex: 1;
min-width: 220px;
transition: background .15s, box-shadow .15s;
border-left-width: 3px;
}
.info-card:hover {
background: var(--bg-card-hover);
box-shadow: var(--shadow);
}
.info-card.full-width { flex: 1 1 100%; }
.card-icon {
width: 36px; height: 36px;
border-radius: var(--radius-sm);
display: flex; align-items: center; justify-content: center;
font-size: 16px;
flex-shrink: 0;
opacity: .85;
}
.card-body { flex: 1; min-width: 0; }
.card-body h4 {
margin: 0 0 6px;
font-size: 13.5px;
font-weight: 600;
color: var(--text-primary);
display: flex;
align-items: center;
gap: 8px;
flex-wrap: wrap;
}
.card-body p {
margin: 0 0 8px;
color: var(--text-secondary);
font-size: 13px;
}
/* Accents colorés des cartes */
.card-accent-blue { border-left-color: var(--accent-blue); }
.card-accent-blue .card-icon { background: rgba(88,166,255,.12); color: var(--accent-blue); }
.card-accent-cyan { border-left-color: var(--accent-cyan); }
.card-accent-cyan .card-icon { background: rgba(57,211,83,.12); color: var(--accent-cyan); }
.card-accent-green { border-left-color: var(--accent-green); }
.card-accent-green .card-icon { background: rgba(63,185,80,.12); color: var(--accent-green); }
.card-accent-teal { border-left-color: var(--accent-teal); }
.card-accent-teal .card-icon { background: rgba(45,212,191,.12); color: var(--accent-teal); }
.card-accent-orange { border-left-color: var(--accent-orange); }
.card-accent-orange .card-icon { background: rgba(240,136,62,.12); color: var(--accent-orange); }
.card-accent-yellow { border-left-color: var(--accent-yellow); }
.card-accent-yellow .card-icon { background: rgba(227,179,65,.12); color: var(--accent-yellow); }
.card-accent-red { border-left-color: var(--accent-red); }
.card-accent-red .card-icon { background: rgba(248,81,73,.12); color: var(--accent-red); }
.card-accent-purple { border-left-color: var(--accent-purple); }
.card-accent-purple .card-icon { background: rgba(188,140,255,.12);color: var(--accent-purple); }
.card-accent-indigo { border-left-color: var(--accent-indigo); }
.card-accent-indigo .card-icon { background: rgba(129,140,248,.12);color: var(--accent-indigo); }
/* ─── Lien d'accès ─── */
.access-link {
font-family: var(--font-mono);
font-size: 12.5px;
color: var(--accent-blue);
word-break: break-all;
}
.access-link .fa-external-link-alt { font-size: 10px; margin-left: 4px; }
/* ─── Listes documentaires ─── */
.doc-list {
display: flex;
flex-direction: column;
gap: 6px;
margin: 0;
padding: 0;
}
.doc-list li {
display: flex;
align-items: flex-start;
gap: 8px;
color: var(--text-secondary);
font-size: 13px;
padding: 4px 0;
border-bottom: 1px solid rgba(48,54,61,.5);
}
.doc-list li:last-child { border-bottom: none; }
.doc-list li i {
width: 16px;
text-align: center;
margin-top: 2px;
flex-shrink: 0;
}
/* ─── Tags ─── */
.tag-list {
display: flex;
flex-wrap: wrap;
gap: 6px;
margin-top: 8px;
}
.tag-list.inline {
display: inline-flex;
margin-top: 0;
margin-left: 4px;
}
.tag {
font-size: 11px;
padding: 2px 8px;
border-radius: 20px;
font-weight: 600;
}
.tag-blue { background: rgba(88,166,255,.12); color: var(--accent-blue); border: 1px solid rgba(88,166,255,.2); }
.tag-green { background: rgba(63,185,80,.12); color: var(--accent-green); border: 1px solid rgba(63,185,80,.2); }
.tag-orange { background: rgba(240,136,62,.12); color: var(--accent-orange); border: 1px solid rgba(240,136,62,.2);}
.tag-gray { background: rgba(110,118,129,.12); color: var(--text-secondary);border: 1px solid rgba(110,118,129,.2);}
/* ─── Grille de puits ─── */
.well-grid {
display: flex;
flex-wrap: wrap;
gap: 6px;
margin-top: 10px;
}
/* Grille serpentin : 6 colonnes fixes, 4 lignes (D/C/B/A) */
.well-grid--serpentine {
display: grid;
grid-template-columns: repeat(6, 1fr);
gap: 5px;
margin-top: 12px;
}
.well-chip {
font-family: var(--font-mono);
font-size: 12px;
font-weight: 700;
padding: 5px 4px;
border-radius: var(--radius-sm);
text-align: center;
letter-spacing: .03em;
/* couleur par défaut (teal) */
background: rgba(45,212,191,.1);
border: 1px solid rgba(45,212,191,.25);
color: var(--accent-teal);
}
/* Couleurs distinctes par ligne */
.wc-d {
background: rgba(248,81,73,.10);
border-color: rgba(248,81,73,.25);
color: var(--accent-red);
}
.wc-c {
background: rgba(240,136,62,.10);
border-color: rgba(240,136,62,.25);
color: var(--accent-orange);
}
.wc-b {
background: rgba(88,166,255,.10);
border-color: rgba(88,166,255,.25);
color: var(--accent-blue);
}
.wc-a {
background: rgba(63,185,80,.10);
border-color: rgba(63,185,80,.25);
color: var(--accent-green);
}
/* ─── Grille de position multi-puits ─── */
.position-grid {
display: grid;
grid-template-columns: 1fr 1fr;
gap: 8px;
margin: 10px 0;
}
.pos-cell {
background: rgba(129,140,248,.08);
border: 1px solid rgba(129,140,248,.2);
border-radius: var(--radius-sm);
padding: 8px 10px;
text-align: center;
font-weight: 700;
font-size: 13px;
color: var(--accent-indigo);
transition: background .15s;
}
.pos-cell.active:hover {
background: rgba(129,140,248,.18);
}
.pos-cell small {
display: block;
font-weight: 400;
font-size: 11px;
color: var(--text-secondary);
}
/* ─── Badges inline ─── */
.badge-auto {
font-size: 10px;
background: rgba(63,185,80,.12);
color: var(--accent-green);
border: 1px solid rgba(63,185,80,.25);
padding: 1px 6px;
border-radius: 20px;
margin-left: 4px;
font-weight: 600;
}
.badge-important {
font-size: 10px;
background: rgba(248,81,73,.15);
color: var(--accent-red);
border: 1px solid rgba(248,81,73,.3);
padding: 1px 6px;
border-radius: 20px;
margin-left: 4px;
font-weight: 700;
}
/* ─── Boîte d'alerte ─── */
.alert-box {
margin-top: 10px;
background: rgba(248,81,73,.08);
border: 1px solid rgba(248,81,73,.25);
border-radius: var(--radius-sm);
padding: 8px 12px;
color: var(--accent-red);
font-size: 12.5px;
font-weight: 600;
display: flex;
align-items: center;
gap: 8px;
}
/* ─── Description de tâche ─── */
.task-desc {
margin: 3px 0 0;
color: var(--text-muted);
font-size: 12px;
}
/* ─── Aide contextuelle ─── */
.hint {
margin: 8px 0 0;
color: var(--text-muted);
font-size: 12px;
}
/* ─── Code inline ─── */
code {
font-family: var(--font-mono);
font-size: 12.5px;
color: var(--text-code);
background: rgba(88,166,255,.07);
padding: 1px 5px;
border-radius: 3px;
border: 1px solid rgba(88,166,255,.12);
}
/* ─── Couleurs utilitaires ─── */
.text-gold { color: #d4a017; }
.text-blue { color: var(--accent-blue); }
.text-gray { color: var(--text-muted); }
.text-green { color: var(--accent-green); }
.text-cyan { color: var(--accent-cyan); }
/* ─── Scrollbar personnalisée ─── */
::-webkit-scrollbar { width: 6px; }
::-webkit-scrollbar-track { background: var(--bg-base); }
::-webkit-scrollbar-thumb { background: var(--border-strong); border-radius: 3px; }
::-webkit-scrollbar-thumb:hover { background: var(--text-muted); }
/* ─── Responsive ─── */
@media (max-width: 768px) {
.doc-wrapper {
grid-template-columns: 1fr;
grid-template-areas:
"header"
"content";
}
.doc-sidenav { display: none; }
.doc-content { padding: 16px; }
.info-card { min-width: 100%; }
}
@@ -0,0 +1,126 @@
/* ============================================================
doc_experiments.css
Styles spécifiques à la page "Démarrer des expériences".
Dépend de doc_database.css + doc_calibration.css.
============================================================ */
/* ─── Badges supplémentaires ─── */
.badge-green {
background: rgba(63,185,80,.12);
color: var(--accent-green);
border: 1px solid rgba(63,185,80,.3);
}
.badge-purple {
background: rgba(188,140,255,.12);
color: var(--accent-purple);
border: 1px solid rgba(188,140,255,.3);
}
.badge-orange {
background: rgba(240,136,62,.12);
color: var(--accent-orange);
border: 1px solid rgba(240,136,62,.3);
}
/* ─── Tags supplémentaires ─── */
.tag-purple {
background: rgba(188,140,255,.12);
color: var(--accent-purple);
border: 1px solid rgba(188,140,255,.2);
}
.tag-yellow {
background: rgba(227,179,65,.12);
color: var(--accent-yellow);
border: 1px solid rgba(227,179,65,.2);
}
/* ─── Étapes numérotées ─── */
ol.doc-steps {
list-style: none;
padding: 0;
margin: 8px 0 0;
counter-reset: step-counter;
display: flex;
flex-direction: column;
gap: 8px;
}
ol.doc-steps li {
display: flex;
align-items: flex-start;
gap: 10px;
color: var(--text-secondary);
font-size: 13px;
counter-increment: step-counter;
padding: 6px 8px;
background: rgba(255,255,255,.02);
border-radius: var(--radius-sm);
border: 1px solid var(--border);
transition: background .12s;
}
ol.doc-steps li:hover {
background: rgba(255,255,255,.05);
}
ol.doc-steps li::before {
content: counter(step-counter);
min-width: 20px;
height: 20px;
border-radius: 50%;
background: rgba(88,166,255,.15);
color: var(--accent-blue);
font-size: 11px;
font-weight: 700;
display: flex;
align-items: center;
justify-content: center;
flex-shrink: 0;
margin-top: 1px;
}
ol.doc-steps li i {
width: 16px;
text-align: center;
margin-top: 2px;
flex-shrink: 0;
}
/* ─── Alert info (bleu, non critique) ─── */
.alert-box.alert-info {
background: rgba(88,166,255,.08);
border-color: rgba(88,166,255,.25);
color: var(--accent-blue);
}
/* ─── Titre de groupe de métriques ─── */
.metrics-group-title {
font-size: 13px;
font-weight: 600;
color: var(--text-secondary);
margin: 16px 0 10px;
display: flex;
align-items: center;
gap: 8px;
text-transform: uppercase;
letter-spacing: .05em;
}
.metrics-group-title i {
color: var(--text-muted);
}
/* ─── Cartes métriques : padding réduit ─── */
.metrics-card {
min-width: 180px;
}
.metrics-card .card-body h4 {
font-size: 13px;
margin-bottom: 8px;
}
/* ─── Tags métriques : inline compact ─── */
.metric-tags {
display: flex;
flex-wrap: wrap;
gap: 5px;
margin-top: 4px;
}
.metric-tags .tag {
font-family: var(--font-mono);
font-size: 11px;
}
@@ -0,0 +1,114 @@
/* ============================================================
doc_media.css
Styles spécifiques à la page "Gestionnaire de médias".
Dépend de doc_database.css + doc_calibration.css
+ doc_experiments.css
+ doc_scanning.css
+ doc_results.css.
============================================================ */
/* ─── Badge purple ─── */
.badge-purple {
background: rgba(188,140,255,.12);
color: var(--accent-purple);
border: 1px solid rgba(188,140,255,.3);
}
/* ─── Prévisualisation grille ─── */
.grid-preview {
display: flex;
align-items: center;
gap: 10px;
margin-top: 14px;
flex-wrap: wrap;
}
.gp-col {
width: 28px; height: 28px;
border-radius: 50%;
background: rgba(188,140,255,.12);
border: 1px solid rgba(188,140,255,.25);
color: var(--accent-purple);
display: flex; align-items: center; justify-content: center;
font-size: 13px;
cursor: default;
}
/* Chaque démo de grille */
.gp-demo {
display: grid;
gap: 3px;
flex: 1;
min-width: 60px;
max-width: 120px;
}
.gp-demo span {
height: 22px;
border-radius: 3px;
background: rgba(188,140,255,.15);
border: 1px solid rgba(188,140,255,.2);
}
.gp-2 { grid-template-columns: repeat(2, 1fr); }
.gp-3 { grid-template-columns: repeat(3, 1fr); }
.gp-4 { grid-template-columns: repeat(4, 1fr); }
/* ─── Contrôles lecteur vidéo ─── */
.player-controls {
display: flex;
gap: 8px;
margin-top: 10px;
flex-wrap: wrap;
}
.player-btn {
display: flex;
flex-direction: column;
align-items: center;
gap: 4px;
padding: 10px 16px;
border-radius: var(--radius-sm);
font-size: 11px;
font-weight: 600;
flex: 1;
min-width: 60px;
border: 1px solid var(--border);
transition: background .15s;
}
.player-btn i { font-size: 16px; }
.player-btn span { color: var(--text-secondary); }
.btn-play {
background: rgba(63,185,80,.08);
border-color: rgba(63,185,80,.25);
color: var(--accent-green);
}
.btn-play:hover { background: rgba(63,185,80,.16); }
.btn-pause {
background: rgba(227,179,65,.08);
border-color: rgba(227,179,65,.25);
color: var(--accent-yellow);
}
.btn-pause:hover { background: rgba(227,179,65,.16); }
.btn-stop {
background: rgba(248,81,73,.08);
border-color: rgba(248,81,73,.25);
color: var(--accent-red);
}
.btn-stop:hover { background: rgba(248,81,73,.16); }
/* ─── Badge export différé ─── */
.deferred-badge {
display: inline-flex;
align-items: center;
gap: 6px;
margin-top: 10px;
padding: 5px 12px;
border-radius: 20px;
font-size: 12px;
font-weight: 600;
background: rgba(45,212,191,.08);
border: 1px solid rgba(45,212,191,.25);
color: var(--accent-teal);
}
@@ -0,0 +1,32 @@
/* ============================================================
doc_results.css
Styles spécifiques à la page "Exploiter les résultats".
Dépend de doc_database.css + doc_calibration.css
+ doc_experiments.css
+ doc_scanning.css.
============================================================ */
/* ─── Bloc chemin serveur ─── */
.path-block {
display: flex;
align-items: center;
gap: 12px;
margin-top: 10px;
padding: 10px 14px;
background: rgba(45,212,191,.06);
border: 1px solid rgba(45,212,191,.2);
border-radius: var(--radius-sm);
color: var(--accent-teal);
}
.path-block i {
font-size: 16px;
flex-shrink: 0;
}
.path-block code {
color: var(--accent-teal);
background: transparent;
border: none;
font-size: 13px;
letter-spacing: .03em;
word-break: break-all;
}
@@ -0,0 +1,54 @@
/* ============================================================
doc_scanning.css
Styles spécifiques à la page "Balayage des puits".
Dépend de doc_database.css + doc_calibration.css
+ doc_experiments.css.
============================================================ */
/* ─── Badge indigo ─── */
.badge-indigo {
background: rgba(129,140,248,.12);
color: var(--accent-indigo);
border: 1px solid rgba(129,140,248,.3);
}
/* ─── Badge red ─── */
.badge-red {
background: rgba(248,81,73,.12);
color: var(--accent-red);
border: 1px solid rgba(248,81,73,.3);
}
/* ─── Badge superadmin ─── */
.badge-superadmin {
font-size: 10px;
background: rgba(188,140,255,.15);
color: var(--accent-purple);
border: 1px solid rgba(188,140,255,.3);
padding: 1px 8px;
border-radius: 20px;
margin-left: 6px;
font-weight: 700;
font-family: var(--font-mono);
}
/* ─── Exemple UUID ─── */
.uuid-example {
display: flex;
align-items: center;
gap: 10px;
margin-top: 10px;
padding: 8px 12px;
background: rgba(227,179,65,.06);
border: 1px dashed rgba(227,179,65,.25);
border-radius: var(--radius-sm);
color: var(--accent-yellow);
font-size: 12.5px;
}
.uuid-example code {
color: var(--accent-yellow);
background: transparent;
border: none;
font-size: 12.5px;
letter-spacing: .04em;
}
@@ -1,6 +1,6 @@
/*
** custom.js
** GNU GENERAL PUBLIC LICENSE: (c) DD miraceti.net return document.querySelectorAll(id);
** GNU GENERAL PUBLIC LICENSE: (c) DD miraceti.net
*/
let s = function(sel) { return document.querySelector(sel); };
let ss = function(sel) { return document.querySelectorAll(sel); };
@@ -0,0 +1,473 @@
{% extends 'scanner/base.html' %}
{% load i18n %}
{% block columns %}{% endblock %}
{% block styles %}
{{ block.super }}
<link rel="stylesheet" href="/static/css/doc_database.css">
<link rel="stylesheet" href="/static/css/doc_calibration.css">
{% endblock %}
{% block content %}
<div class="doc-wrapper">
<!-- ─── En-tête ─── -->
<header class="doc-header">
<div class="doc-header-inner">
<div class="doc-header-icon" style="background: linear-gradient(135deg, var(--accent-teal), var(--accent-blue));">
<i class="fas fa-crosshairs"></i>
</div>
<div>
<h1 class="doc-title">{% trans "Calibration du scanner" %}</h1>
<p class="doc-subtitle">{% trans "Procédure, organisation de l'écran et commandes disponibles" %}</p>
</div>
</div>
</header>
<!-- ─── Navigation latérale ─── -->
<nav class="doc-sidenav" id="sidenav">
<p class="nav-section-label">{% trans "Navigation" %}</p>
<a href="#section-intro" class="nav-link active"><i class="fas fa-info-circle"></i> {% trans "Présentation" %}</a>
<a href="#section-screen" class="nav-link"> <i class="fas fa-desktop"></i> {% trans "Organisation écran" %}</a>
<a href="#section-left" class="nav-link nav-sub"><i class="fas fa-arrows-alt"></i> {% trans "Panneau gauche" %}</a>
<a href="#section-center" class="nav-link nav-sub"><i class="fas fa-video"></i> {% trans "Centre — vidéo live" %}</a>
<a href="#section-right" class="nav-link nav-sub"><i class="fas fa-sliders-h"></i> {% trans "Panneau droit" %}</a>
<a href="#section-centering" class="nav-link nav-sub-2"><i class="fas fa-dot-circle"></i> {% trans "Centrage" %}</a>
<a href="#section-base" class="nav-link nav-sub-2"><i class="fas fa-map-pin"></i> {% trans "Définir la base" %}</a>
</nav>
<!-- ─── Contenu principal ─── -->
<main class="doc-content">
<!-- ============================================================ -->
<!-- SECTION 1 : Présentation -->
<!-- ============================================================ -->
<section class="doc-section" id="section-intro">
<div class="section-header">
<span class="section-badge badge-teal">{% trans "Prérequis" %}</span>
<h2><i class="fas fa-crosshairs"></i> {% trans "Calibration" %}</h2>
<p class="section-desc">
{% trans "La calibration est indispensable au fonctionnement du scanner." %}<br>
<i class="fas fa-exclamation-triangle w3-text-red"></i> {% trans "Affichage des logs en bas de page" %}
</p>
</div>
<div class="info-row">
<!-- Pourquoi calibrer -->
<div class="info-card card-accent-teal">
<div class="card-icon"><i class="fas fa-bullseye"></i></div>
<div class="card-body">
<h4>{% trans "Objectifs" %}</h4>
<ul class="doc-list">
<li>
<i class="fas fa-camera text-blue"></i>
{% trans "Pointer l'axe de la caméra dans l'axe du tube." %}
</li>
<li>
<i class="fas fa-crop-alt text-cyan"></i>
{% trans "Recadrer l'image pour porter l'origine du suivi des planaires au centre du tube." %}
</li>
</ul>
</div>
</div>
<!-- Avantage recadrage -->
<div class="info-card card-accent-green">
<div class="card-icon"><i class="fas fa-compress-arrows-alt"></i></div>
<div class="card-body">
<h4>{% trans "Avantage du recadrage" %}</h4>
<ul class="doc-list">
<li>
<i class="fas fa-hdd text-green"></i>
{% trans "Réduit la taille des images stockées." %}
</li>
</ul>
</div>
</div>
</div>
<!-- IMPORTANT : base de départ -->
<div class="info-row">
<div class="info-card card-accent-red full-width">
<div class="card-icon"><i class="fas fa-exclamation-triangle"></i></div>
<div class="card-body">
<h4>{% trans "IMPORTANT — Avant toute manipulation" %} <span class="badge-important">{% trans "IMPORTANT" %}</span></h4>
<p>{% trans "Pour tout multi-puits, trouver la base de départ avant de commencer." %}</p>
</div>
</div>
</div>
</section>
<!-- ============================================================ -->
<!-- SECTION 2 : Organisation de l'écran -->
<!-- ============================================================ -->
<section class="doc-section" id="section-screen">
<div class="section-header">
<span class="section-badge badge-blue">{% trans "Interface" %}</span>
<h2><i class="fas fa-desktop"></i> {% trans "Organisation de l'écran" %}</h2>
<p class="section-desc">{% trans "L'écran de calibration est divisé en trois zones fonctionnelles." %}</p>
</div>
<!-- Schéma des 3 zones -->
<div class="screen-layout">
<div class="screen-zone zone-left">
<i class="fas fa-arrows-alt"></i>
<span>{% trans "Déplacements" %}</span>
</div>
<div class="screen-zone zone-center">
<i class="fas fa-video"></i>
<span>{% trans "Vidéo live" %}</span>
</div>
<div class="screen-zone zone-right">
<i class="fas fa-sliders-h"></i>
<span>{% trans "Commandes" %}</span>
</div>
</div>
<!-- ─── Panneau GAUCHE ─── -->
<div class="subsection" id="section-left">
<h3 class="subsection-title">
<i class="fas fa-arrow-left"></i> {% trans "Panneau gauche — Déplacements caméra" %}
</h3>
<div class="info-row">
<!-- Sélection & vitesse -->
<div class="info-card card-accent-indigo">
<div class="card-icon"><i class="fas fa-exchange-alt"></i></div>
<div class="card-body">
<h4>{% trans "Sélection & vitesse" %}</h4>
<ul class="doc-list">
<li><i class="fas fa-th"></i> {% trans "Changer de multi-puits" %}</li>
<li><i class="fas fa-tachometer-alt"></i> {% trans "Modifier la vitesse (mm/mn)" %}</li>
<li><i class="fas fa-ruler-horizontal"></i> {% trans "Modifier le pas de déplacement (mm)" %}</li>
</ul>
</div>
</div>
<!-- Manœuvre manuelle -->
<div class="info-card card-accent-blue">
<div class="card-icon"><i class="fas fa-gamepad"></i></div>
<div class="card-body">
<h4>{% trans "Manœuvre manuelle" %}</h4>
<ul class="doc-list">
<li>
<i class="fas fa-arrows-alt"></i>
{% trans "Déplacement" %}
<div class="tag-list inline">
<span class="tag tag-blue">±X</span>
<span class="tag tag-blue">±Y</span>
</div>
</li>
<li><i class="fas fa-save"></i> {% trans "Sauver la position courante" %}</li>
</ul>
</div>
</div>
<!-- Déplacement puit à puit -->
<div class="info-card card-accent-cyan">
<div class="card-icon"><i class="fas fa-step-forward"></i></div>
<div class="card-body">
<h4>{% trans "Navigation puit à puit" %}</h4>
<ul class="doc-list">
<li><i class="fas fa-arrow-right text-cyan"></i> {% trans "Boutons de déplacement puit à puit" %}</li>
<li><i class="fas fa-compress-arrows-alt text-cyan"></i> {% trans "Bouton centrage manuel" %}</li>
<li><i class="fas fa-magic text-cyan"></i> {% trans "Bouton calibrage automatique" %}</li>
</ul>
</div>
</div>
</div>
<!-- Sous-section : Définir la base -->
<div class="sub-subsection" id="section-base">
<h4 class="table-title">
<i class="fas fa-map-pin"></i>
{% trans "Définir la base" %}
<span class="badge-important">{% trans "IMPORTANT" %}</span>
</h4>
<div class="info-row">
<!-- Création en BDD -->
<div class="info-card card-accent-orange">
<div class="card-icon"><i class="fas fa-database"></i></div>
<div class="card-body">
<h4>{% trans "À la création du multi-puits en base" %}</h4>
<ul class="doc-list">
<li>
<i class="fas fa-map-marker-alt text-orange"></i>
{% trans "Fixe la base par défaut en" %} <code>(50, 50)</code>
</li>
<li>
<i class="fas fa-calculator text-orange"></i>
{% trans "Calcule et enregistre toutes les positions des puits dans" %}
<code>scanner.wellposition</code>
<p class="task-desc">
<i class="fas fa-bolt text-green"></i>
{% trans "Permet de gagner du temps au centrage manuel ou automatique." %}
</p>
</li>
</ul>
</div>
</div>
<!-- Donnée positions générées -->
<div class="info-card card-accent-yellow">
<div class="card-icon"><i class="fas fa-sync-alt"></i></div>
<div class="card-body">
<h4>
{% trans "Positions générées" %} — <code>scanner.multiwell</code>
<span class="badge-important">{% trans "ATTENTION" %}</span>
</h4>
<ul class="doc-list">
<li>
<i class="fas fa-check-circle text-green"></i>
{% trans "À la création : donnée fixée à" %} <strong>{% trans "Oui" %}</strong>
</li>
<li>
<i class="fas fa-times-circle text-red"></i>
{% trans "Non → efface" %} <code>WellPosition</code>
{% trans "et recalcule toutes les positions" %}
</li>
</ul>
</div>
</div>
</div>
<!-- Bouton Définir la base -->
<div class="info-row">
<div class="info-card card-accent-blue full-width">
<div class="card-icon"><i class="fas fa-flag-checkered"></i></div>
<div class="card-body">
<h4>{% trans "Bouton « Définir la base »" %}</h4>
<ul class="doc-list">
<li>
<i class="fas fa-map-marker text-blue"></i>
{% trans "Fixe la base aux coordonnées" %} <code>(X, Y)</code> {% trans "courantes" %}
</li>
<li>
<i class="fas fa-redo text-blue"></i>
{% trans "Recalcule toutes les positions des puits dans" %} <code>scanner.wellposition</code>
</li>
</ul>
</div>
</div>
</div>
</div>
<!-- Sous-section : Centrage -->
<div class="sub-subsection" id="section-centering">
<h4 class="table-title">
<i class="fas fa-dot-circle"></i>
{% trans "Centrage manuel / automatique" %}
<span class="badge-important">{% trans "ATTENTION" %}</span>
</h4>
<div class="info-row">
<!-- Conditions -->
<div class="info-card card-accent-purple">
<div class="card-icon"><i class="fas fa-lightbulb"></i></div>
<div class="card-body">
<h4>{% trans "Conditions requises" %}</h4>
<ul class="doc-list">
<li>
<i class="fas fa-sun text-yellow"></i>
{% trans "Éclairage important des puits — éviter les ombres." %}
</li>
<li>
<i class="fas fa-toggle-on text-blue"></i>
{% trans "Actif uniquement si Debug" %} <strong>{% trans "ET" %}</strong> {% trans "Recadrage activés (commandes à droite)." %}
</li>
</ul>
</div>
</div>
<!-- Indicateurs visuels -->
<div class="info-card card-accent-indigo">
<div class="card-icon"><i class="fas fa-circle-notch"></i></div>
<div class="card-body">
<h4>{% trans "Indicateurs visuels de centrage" %}</h4>
<ul class="doc-list">
<li>
<i class="fas fa-circle" style="color:#f85149;"></i>
<strong class="text-red">{% trans "Cercle rouge" %}</strong>
— {% trans "déplacement centre" %} <code>&lt; 20 px</code>
</li>
<li>
<i class="fas fa-circle" style="color:#e3b341;"></i>
<strong style="color:var(--accent-yellow);">{% trans "Cercle jaune" %}</strong>
— {% trans "au plus près" %} <code>&lt; 5 px</code>
</li>
<li>
<i class="fas fa-circle" style="color:#3fb950;"></i>
<strong class="text-green">{% trans "Cercle vert" %}</strong>
— {% trans "centré" %}
</li>
</ul>
<!-- Barre visuelle des seuils -->
<div class="center-bar">
<div class="cb-seg cb-red">
<span>&lt; 20 px</span>
</div>
<div class="cb-seg cb-yellow">
<span>&lt; 5 px</span>
</div>
<div class="cb-seg cb-green">
<span>{% trans "OK" %}</span>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<!-- ─── CENTRE ─── -->
<div class="subsection" id="section-center">
<h3 class="subsection-title">
<i class="fas fa-video"></i> {% trans "Centre — Vidéo live" %}
</h3>
<div class="info-row">
<div class="info-card card-accent-teal full-width">
<div class="card-icon"><i class="fas fa-film"></i></div>
<div class="card-body">
<h4>{% trans "Flux vidéo en temps réel" %}</h4>
<p>{% trans "Affiche le flux caméra en direct, avec ou sans recadrage selon l'état de la commande." %}</p>
<div class="tag-list">
<span class="tag tag-teal">{% trans "Recadrage actif" %}</span>
<span class="tag tag-gray">{% trans "Image pleine" %}</span>
</div>
</div>
</div>
</div>
</div>
<!-- ─── PANNEAU DROIT ─── -->
<div class="subsection" id="section-right">
<h3 class="subsection-title">
<i class="fas fa-arrow-right"></i> {% trans "Panneau droit — Commandes" %}
</h3>
<div class="info-row">
<!-- Navigation rapide -->
<div class="info-card card-accent-blue">
<div class="card-icon"><i class="fas fa-location-arrow"></i></div>
<div class="card-body">
<h4>{% trans "Navigation rapide" %}</h4>
<ul class="doc-list">
<li><i class="fas fa-home text-blue"></i> {% trans "Déplacer à l'origine (0, 0)" %}</li>
<li><i class="fas fa-map-pin text-blue"></i> {% trans "Aller à la base du multi-puits" %}</li>
</ul>
</div>
</div>
<!-- Bascules -->
<div class="info-card card-accent-indigo">
<div class="card-icon"><i class="fas fa-toggle-on"></i></div>
<div class="card-body">
<h4>{% trans "Bascules" %}</h4>
<ul class="doc-list">
<li>
<i class="fas fa-bug text-purple"></i>
{% trans "Debug" %}
<div class="tag-list inline">
<span class="tag tag-green">{% trans "Oui" %}</span>
<span class="tag tag-gray">{% trans "Non" %}</span>
</div>
</li>
<li>
<i class="fas fa-ruler-combined text-purple"></i>
{% trans "Tracer axes" %}
<div class="tag-list inline">
<span class="tag tag-green">{% trans "Oui" %}</span>
<span class="tag tag-gray">{% trans "Non" %}</span>
</div>
</li>
<li>
<i class="fas fa-crop-alt text-purple"></i>
{% trans "Recadrage" %}
<div class="tag-list inline">
<span class="tag tag-green">{% trans "Oui" %}</span>
<span class="tag tag-gray">{% trans "Non" %}</span>
</div>
</li>
</ul>
</div>
</div>
</div>
<div class="info-row">
<!-- Rayon de recadrage -->
<div class="info-card card-accent-cyan">
<div class="card-icon"><i class="fas fa-circle-notch"></i></div>
<div class="card-body">
<h4>{% trans "Rayon de recadrage" %}</h4>
<p>{% trans "Ajuster le recadrage en pixels." %}</p>
</div>
</div>
<!-- Durée test -->
<div class="info-card card-accent-orange">
<div class="card-icon"><i class="fas fa-stopwatch"></i></div>
<div class="card-body">
<h4>{% trans "Durée entre puits" %}</h4>
<p>{% trans "Durée de pause entre chaque puit lors du test du circuit." %}</p>
</div>
</div>
<!-- Tester le circuit -->
<div class="info-card card-accent-green">
<div class="card-icon"><i class="fas fa-route"></i></div>
<div class="card-body">
<h4>{% trans "Tester le circuit" %}</h4>
<p>{% trans "Vérifier les déplacements en parcourant automatiquement tous les puits." %}</p>
</div>
</div>
</div>
<!-- ARRÊT -->
<div class="info-row">
<div class="info-card card-accent-red full-width">
<div class="card-icon"><i class="fas fa-hand-paper"></i></div>
<div class="card-body">
<h4>
{% trans "ARRÊT" %}
<span class="badge-important">{% trans "URGENCE" %}</span>
</h4>
<div class="alert-box">
<i class="fas fa-stop-circle"></i>
{% trans "Stoppe immédiatement tout mouvement du scanner." %}
</div>
</div>
</div>
</div>
</div><!-- end section-right -->
</section><!-- end section-screen -->
</main>
</div>
{% endblock %}
{% block js_footer %}
{{ block.super }}
<script>
/* Mise en évidence du lien actif dans la navigation latérale */
(function () {
const links = document.querySelectorAll('.nav-link');
const sections = document.querySelectorAll('[id^="section-"]');
const observer = new IntersectionObserver(
(entries) => {
entries.forEach(entry => {
if (entry.isIntersecting) {
links.forEach(l => l.classList.remove('active'));
const target = document.querySelector(`.nav-link[href="#${entry.target.id}"]`);
if (target) target.classList.add('active');
}
});
},
{ rootMargin: '-10% 0px -80% 0px' }
);
sections.forEach(s => observer.observe(s));
})();
</script>
{% endblock %}
@@ -0,0 +1,510 @@
{% extends 'scanner/base.html' %}
{% load i18n %}
{% block columns %}{% endblock %}
{% block styles %}
{{ block.super }}
<link href="/static/css/doc_database.css" rel="stylesheet">
{% endblock %}
{% block content %}
<div class="doc-wrapper">
<!-- En-tête de la documentation -->
<header class="doc-header">
<div class="doc-header-inner">
<div class="doc-header-icon">
<i class="fas fa-database"></i>
</div>
<div>
<h1 class="doc-title">{% trans "Architecture des bases de données" %}</h1>
<p class="doc-subtitle">{% trans "Planarian Scanner — Infrastructure de stockage et modèles de données" %}</p>
</div>
</div>
</header>
<!-- Navigation latérale -->
<nav class="doc-sidenav" id="sidenav">
<p class="nav-section-label">{% trans "Navigation" %}</p>
<a href="#section-reductstore" class="nav-link active">
<i class="fas fa-wave-square"></i> ReductStore
</a>
<a href="#section-mariadb" class="nav-link">
<i class="fas fa-server"></i> MariaDB
</a>
<a href="#section-auth" class="nav-link nav-sub">
<i class="fas fa-shield-alt"></i> {% trans "Authentification" %}
</a>
<a href="#section-planarian" class="nav-link nav-sub">
<i class="fas fa-microscope"></i> Planarian
</a>
<a href="#section-scanner" class="nav-link nav-sub">
<i class="fas fa-camera"></i> Scanner
</a>
<a href="#section-config" class="nav-link nav-sub-2">
<i class="fas fa-sliders-h"></i> {% trans "Configuration" %}
</a>
<a href="#section-wells" class="nav-link nav-sub-2">
<i class="fas fa-circle"></i> {% trans "Puits" %}
</a>
<a href="#section-multiwell" class="nav-link nav-sub-2">
<i class="fas fa-th"></i> {% trans "Multi-puits" %}
</a>
<a href="#section-wellpos" class="nav-link nav-sub-2">
<i class="fas fa-map-marker-alt"></i> {% trans "Positions" %}
</a>
<a href="#section-experiments" class="nav-link nav-sub-2">
<i class="fas fa-flask"></i> {% trans "Expériences" %}
</a>
<a href="#section-sessions" class="nav-link nav-sub-2">
<i class="fas fa-play-circle"></i> {% trans "Sessions" %}
</a>
<a href="#section-celery" class="nav-link nav-sub-2">
<i class="fas fa-tasks"></i> Celery Beat
</a>
</nav>
<!-- Contenu principal -->
<main class="doc-content">
<!-- ============================================================ -->
<!-- SECTION 1 : ReductStore -->
<!-- ============================================================ -->
<section class="doc-section" id="section-reductstore">
<div class="section-header">
<span class="section-badge badge-time">{% trans "Séries temporelles" %}</span>
<h2><i class="fas fa-wave-square"></i> ReductStore</h2>
<p class="section-desc">{% trans "Base de données de séries temporelles pour les images et métriques de l'application." %}</p>
</div>
<div class="info-row">
<div class="info-card card-accent-blue">
<div class="card-icon"><i class="fas fa-link"></i></div>
<div class="card-body">
<h4>{% trans "Accès" %}</h4>
<a href="http://192.168.1.200:8383/ui/dashboard" target="_blank" class="access-link">
192.168.1.200:8383/ui/dashboard <i class="fas fa-external-link-alt"></i>
</a>
</div>
</div>
</div>
<h3 class="subsection-title"><i class="fas fa-bucket"></i> {% trans "Buckets" %}</h3>
<div class="info-row">
<div class="info-card card-accent-cyan">
<div class="card-icon"><i class="fas fa-images"></i></div>
<div class="card-body">
<h4><code>camera</code></h4>
<p>{% trans "Stockage des images capturées par la caméra." %}</p>
<div class="tag-list">
<span class="tag tag-blue">JPEG</span>
<span class="tag tag-gray">{% trans "Séries temporelles" %}</span>
</div>
</div>
</div>
<div class="info-card card-accent-cyan">
<div class="card-icon"><i class="fas fa-chart-line"></i></div>
<div class="card-body">
<h4><code>planarian_metrics</code></h4>
<p>{% trans "Métriques de suivi des planaires." %}</p>
<div class="tag-list">
<span class="tag tag-green">JSON</span>
<span class="tag tag-gray">{% trans "Séries temporelles" %}</span>
</div>
</div>
</div>
</div>
</section>
<!-- ============================================================ -->
<!-- SECTION 2 : MariaDB -->
<!-- ============================================================ -->
<section class="doc-section" id="section-mariadb">
<div class="section-header">
<span class="section-badge badge-orange">{% trans "Base relationnelle" %}</span>
<h2><i class="fas fa-server"></i> MariaDB</h2>
<p class="section-desc">{% trans "Base de données relationnelle principale de l'application Django." %}</p>
</div>
<div class="info-row">
<div class="info-card card-accent-orange">
<div class="card-icon"><i class="fas fa-database"></i></div>
<div class="card-body">
<h4>Adminer</h4>
<a href="http://192.168.1.200/adminer/" target="_blank" class="access-link">
192.168.1.200/adminer/ <i class="fas fa-external-link-alt"></i>
</a>
</div>
</div>
<div class="info-card card-accent-orange">
<div class="card-icon"><i class="fas fa-user-shield"></i></div>
<div class="card-body">
<h4>{% trans "Administration Django" %}</h4>
<a href="http://192.168.1.200/admin" target="_blank" class="access-link">
192.168.1.200/admin <i class="fas fa-external-link-alt"></i>
</a>
</div>
</div>
</div>
<!-- -------------------------------------------------------- -->
<!-- Authentification -->
<!-- -------------------------------------------------------- -->
<div class="subsection" id="section-auth">
<h3 class="subsection-title"><i class="fas fa-shield-alt"></i> {% trans "Authentification & Autorisation" %}</h3>
<div class="info-row">
<div class="info-card card-accent-purple">
<div class="card-icon"><i class="fas fa-users-cog"></i></div>
<div class="card-body">
<h4>{% trans "Groupes" %}</h4>
<ul class="doc-list">
<li><i class="fas fa-crown text-gold"></i> Admin</li>
<li><i class="fas fa-user-tie text-blue"></i> Staff</li>
<li><i class="fas fa-user text-gray"></i> {% trans "Staff limité" %}</li>
</ul>
</div>
</div>
<div class="info-card card-accent-purple">
<div class="card-icon"><i class="fas fa-user-circle"></i></div>
<div class="card-body">
<h4>{% trans "Utilisateurs" %}</h4>
<ul class="doc-list">
<li><i class="fas fa-star text-gold"></i> superadmin</li>
</ul>
</div>
</div>
</div>
</div>
<!-- -------------------------------------------------------- -->
<!-- Planarian -->
<!-- -------------------------------------------------------- -->
<div class="subsection" id="section-planarian">
<h3 class="subsection-title"><i class="fas fa-microscope"></i> {% trans "Application Planarian" %}</h3>
<div class="info-row">
<div class="info-card card-accent-green full-width">
<div class="card-icon"><i class="fas fa-vials"></i></div>
<div class="card-body">
<h4><code>planarian_experimentconfig</code></h4>
<p>{% trans "Configurations des expériences de suivi des planaires." %}</p>
</div>
</div>
</div>
</div>
<!-- -------------------------------------------------------- -->
<!-- Scanner -->
<!-- -------------------------------------------------------- -->
<div class="subsection" id="section-scanner">
<h3 class="subsection-title"><i class="fas fa-camera"></i> {% trans "Application Scanner" %}</h3>
<!-- Configuration -->
<div class="sub-subsection" id="section-config">
<h4 class="table-title">
<i class="fas fa-sliders-h"></i>
<code>scanner_configuration</code>
<span class="table-desc">{% trans "Constantes et valeurs par défaut" %}</span>
</h4>
<div class="info-row">
<div class="info-card card-accent-blue">
<div class="card-icon"><i class="fas fa-camera-retro"></i></div>
<div class="card-body">
<h4>{% trans "Caméra" %}</h4>
<ul class="doc-list">
<li>
<i class="fas fa-plug"></i>
{% trans "Capture" %} :
<div class="tag-list inline">
<span class="tag tag-blue">Arducam</span>
<span class="tag tag-gray">Webcam</span>
<span class="tag tag-gray">{% trans "Fichier vidéo" %}</span>
</div>
</li>
<li><i class="fas fa-film"></i> {% trans "Fréquence vidéos (fps)" %}</li>
<li><i class="fas fa-arrows-alt-h"></i> {% trans "Largeur de capture vidéo" %}</li>
<li><i class="fas fa-arrows-alt-v"></i> {% trans "Hauteur de capture vidéo" %}</li>
</ul>
</div>
</div>
<div class="info-card card-accent-blue">
<div class="card-icon"><i class="fas fa-crosshairs"></i></div>
<div class="card-body">
<h4>{% trans "Suivi / Tracking" %}</h4>
<ul class="doc-list">
<li><i class="fas fa-cog"></i> {% trans "Valeurs par défaut du tracking" %}</li>
</ul>
</div>
</div>
</div>
</div>
<!-- Puits -->
<div class="sub-subsection" id="section-wells">
<h4 class="table-title">
<i class="fas fa-circle"></i>
<code>scanner_well</code>
<span class="table-desc">{% trans "Noms des puits" %}</span>
</h4>
<div class="info-row">
<div class="info-card card-accent-teal full-width">
<div class="card-icon"><i class="fas fa-th-large"></i></div>
<div class="card-body">
<p>{% trans "Contient uniquement les noms des puits disponibles." %}</p>
<p class="hint"><i class="fas fa-exchange-alt"></i> {% trans "Lecture en serpentin dans le sens des ±X" %}</p>
<!-- Grille serpentin : D1→D6 / C6←C1 / B1→B6 / A6←A1 -->
<div class="well-grid well-grid--serpentine">
{# Ligne D : gauche → droite (D1..D6) #}
<span class="well-chip wc-d">D1</span><span class="well-chip wc-d">D2</span>
<span class="well-chip wc-d">D3</span><span class="well-chip wc-d">D4</span>
<span class="well-chip wc-d">D5</span><span class="well-chip wc-d">D6</span>
{# Ligne C : droite → gauche (C6..C1) #}
<span class="well-chip wc-c">C6</span><span class="well-chip wc-c">C5</span>
<span class="well-chip wc-c">C4</span><span class="well-chip wc-c">C3</span>
<span class="well-chip wc-c">C2</span><span class="well-chip wc-c">C1</span>
{# Ligne B : gauche → droite (B1..B6) #}
<span class="well-chip wc-b">B1</span><span class="well-chip wc-b">B2</span>
<span class="well-chip wc-b">B3</span><span class="well-chip wc-b">B4</span>
<span class="well-chip wc-b">B5</span><span class="well-chip wc-b">B6</span>
{# Ligne A : droite → gauche (A6..A1) #}
<span class="well-chip wc-a">A6</span><span class="well-chip wc-a">A5</span>
<span class="well-chip wc-a">A4</span><span class="well-chip wc-a">A3</span>
<span class="well-chip wc-a">A2</span><span class="well-chip wc-a">A1</span>
</div>
</div>
</div>
</div>
</div>
<!-- Multi-puits -->
<div class="sub-subsection" id="section-multiwell">
<h4 class="table-title">
<i class="fas fa-th"></i>
<code>scanner_multiwell</code>
<span class="table-desc">{% trans "Géométrie et déplacements" %}</span>
</h4>
<div class="info-row">
<div class="info-card card-accent-indigo">
<div class="card-icon"><i class="fas fa-map"></i></div>
<div class="card-body">
<h4>{% trans "Position sur la table" %}</h4>
<div class="position-grid">
<div class="pos-cell active">HG<br><small>{% trans "Haut gauche" %}</small></div>
<div class="pos-cell active">HD<br><small>{% trans "Haut droit" %}</small></div>
<div class="pos-cell active">BG<br><small>{% trans "Bas gauche" %}</small></div>
<div class="pos-cell active">BD<br><small>{% trans "Bas droit" %}</small></div>
</div>
<p class="hint"><i class="fas fa-info-circle"></i> {% trans "4 positions disponibles sur la table" %}</p>
<p class="hint"><i class="fas fa-info-circle"></i> {% trans "(0, 0) de le CNC est en HD" %}</p>
<p class="hint"><i class="fas fa-info-circle"></i> {% trans "HD --> HG +X" %}</p>
<p class="hint"><i class="fas fa-info-circle"></i> {% trans "HD --> BD +Y" %}</p>
</div>
</div>
<div class="info-card card-accent-indigo">
<div class="card-icon"><i class="fas fa-ruler-combined"></i></div>
<div class="card-body">
<h4>{% trans "Géométrie" %}</h4>
<ul class="doc-list">
<li><i class="fas fa-grip-lines"></i> {% trans "Nombre de lignes" %}</li>
<li><i class="fas fa-grip-lines-vertical"></i> {% trans "Nombre de colonnes" %}</li>
<li><i class="fas fa-circle"></i> {% trans "Diamètre des puits" %}</li>
<li><i class="fas fa-font"></i> {% trans "Définition des lignes (A, B, C, D)" %}</li>
<li><i class="fas fa-exchange-alt"></i> {% trans "Lecture en serpentin ±X (D→C→B→A)" %}</li>
</ul>
</div>
</div>
<div class="info-card card-accent-indigo">
<div class="card-icon"><i class="fas fa-route"></i></div>
<div class="card-body">
<h4>{% trans "Déplacements" %}</h4>
<ul class="doc-list">
<li><i class="fas fa-sort-numeric-down"></i> {% trans "Ordre de lecture" %}</li>
<li><i class="fas fa-stopwatch"></i> {% trans "Durée de capture (calibration)" %}</li>
<li>
<i class="fas fa-location-arrow"></i>
{% trans "Origine X" %}
<span class="badge-auto">{% trans "Calibration" %}</span>
</li>
<li>
<i class="fas fa-location-arrow fa-rotate-90"></i>
{% trans "Origine Y" %}
<span class="badge-auto">{% trans "Calibration" %}</span>
</li>
<li><i class="fas fa-arrows-alt-h"></i> {% trans "Pas X mesuré" %}</li>
<li><i class="fas fa-arrows-alt-v"></i> {% trans "Pas Y mesuré" %}</li>
<li><i class="fas fa-tachometer-alt"></i> {% trans "Vitesse (mm/mn)" %}</li>
</ul>
</div>
</div>
</div>
<div class="info-row">
<div class="info-card card-accent-yellow full-width">
<div class="card-icon"><i class="fas fa-exclamation-triangle"></i></div>
<div class="card-body">
<h4>{% trans "Positions générées" %}</h4>
<p>{% trans "Si les positions ne sont pas encore générées, le système efface" %} <code>WellPosition</code> {% trans "et recalcule toutes les positions des puits." %}</p>
</div>
</div>
</div>
</div>
<!-- Position des puits -->
<div class="sub-subsection" id="section-wellpos">
<h4 class="table-title">
<i class="fas fa-map-marker-alt"></i>
<code>scanner_wellposition</code>
<span class="table-desc">{% trans "Positions calibrées des puits" %}</span>
</h4>
<div class="info-row">
<div class="info-card card-accent-cyan">
<div class="card-icon"><i class="fas fa-drafting-compass"></i></div>
<div class="card-body">
<h4>{% trans "Calibration" %}</h4>
<p>{% trans "Manuelle ou automatique." %}</p>
<ul class="doc-list">
<li><i class="fas fa-arrows-alt-h"></i> {% trans "Axe X (mm)" %} <span class="badge-auto">{% trans "Calibration" %}</span></li>
<li><i class="fas fa-arrows-alt-v"></i> {% trans "Axe Y (mm)" %} <span class="badge-auto">{% trans "Calibration" %}</span></li>
</ul>
</div>
</div>
<div class="info-card card-accent-red">
<div class="card-icon"><i class="fas fa-exclamation-circle"></i></div>
<div class="card-body">
<h4>{% trans "Pixels par mm" %} <span class="badge-important">{% trans "IMPORTANT" %}</span></h4>
<p>{% trans "Facteur de calibration optique calculé en fonction de la taille de l'image." %}</p>
<div class="alert-box">
<i class="fas fa-redo"></i>
{% trans "Recalibrer si la taille de l'image est modifiée !" %}
</div>
</div>
</div>
</div>
</div>
<!-- Expériences -->
<div class="sub-subsection" id="section-experiments">
<h4 class="table-title">
<i class="fas fa-flask"></i>
<code>scanner_experiment</code> &amp; <code>scanner_experimentwell</code>
<span class="table-desc">{% trans "Expériences et puits associés" %}</span>
</h4>
<div class="info-row">
<div class="info-card card-accent-green">
<div class="card-icon"><i class="fas fa-vial"></i></div>
<div class="card-body">
<h4>{% trans "Valeurs importantes" %}</h4>
<ul class="doc-list">
<li><i class="fas fa-link"></i> {% trans "Multi-puits lié" %}</li>
<li><i class="fas fa-clock"></i> {% trans "Durée de capture (secondes)" %}</li>
<li><i class="fas fa-fingerprint"></i> {% trans "Identifiant d'expérience" %}</li>
</ul>
</div>
</div>
<div class="info-card card-accent-green">
<div class="card-icon"><i class="fas fa-magic"></i></div>
<div class="card-body">
<h4>{% trans "Création automatique" %}</h4>
<p>{% trans "À la création d'une expérience, les puits liés sont automatiquement créés dans" %} <code>scanner_experimentwell</code>.</p>
</div>
</div>
</div>
</div>
<!-- Sessions -->
<div class="sub-subsection" id="section-sessions">
<h4 class="table-title">
<i class="fas fa-play-circle"></i>
<code>scanner_session</code> &amp; <code>scanner_sessionexperiment</code>
<span class="table-desc">{% trans "Sessions d'expériences" %}</span>
</h4>
<div class="info-row">
<div class="info-card card-accent-blue">
<div class="card-icon"><i class="fas fa-layer-group"></i></div>
<div class="card-body">
<h4>{% trans "Regroupement" %}</h4>
<p>{% trans "Regroupe les expériences lors d'un balayage dans" %} <code>scanner_sessionexperiment</code>.</p>
<div class="tag-list">
<span class="tag tag-blue">{% trans "4 multi-puits maximum" %}</span>
</div>
</div>
</div>
<div class="info-card card-accent-blue">
<div class="card-icon"><i class="fas fa-tasks"></i></div>
<div class="card-body">
<h4>{% trans "2 tâches Celery créées" %}</h4>
<ul class="doc-list">
<li>
<i class="fas fa-play text-green"></i>
<code>scanning_session</code>
<p class="task-desc">{% trans "Lancement différé d'un balayage de session." %}</p>
</li>
<li>
<i class="fas fa-file-export text-cyan"></i>
<code>export_session</code>
<p class="task-desc">
{% trans "Export images et vidéos :" %}
<span class="tag tag-gray">{% trans "Local" %}</span>
<span class="tag tag-gray">{% trans "Support distant" %}</span>
</p>
</li>
</ul>
</div>
</div>
</div>
</div>
<!-- Celery Beat -->
<div class="sub-subsection" id="section-celery">
<h4 class="table-title">
<i class="fas fa-tasks"></i>
<code>django_celery_beat_periodictask</code>
<span class="table-desc">{% trans "Gestion des tâches différées" %}</span>
</h4>
<div class="info-row">
<div class="info-card card-accent-orange full-width">
<div class="card-icon"><i class="fas fa-clock"></i></div>
<div class="card-body">
<p>{% trans "Gère le déclenchement et la planification des tâches Celery différées." %}</p>
<div class="tag-list">
<span class="tag tag-orange">Celery Beat</span>
<span class="tag tag-gray">{% trans "Tâches périodiques" %}</span>
</div>
</div>
</div>
</div>
</div>
</div><!-- end section-scanner -->
</section><!-- end section-mariadb -->
</main><!-- end doc-content -->
</div><!-- end doc-wrapper -->
{% endblock %}
{% block js_footer %}
{{ block.super }}
<script>
/* Mise en évidence du lien actif dans la navigation latérale */
(function () {
const links = document.querySelectorAll('.nav-link');
const sections = document.querySelectorAll('.doc-section, .subsection, .sub-subsection');
/* Observer d'intersection pour la navigation active */
const observer = new IntersectionObserver(
(entries) => {
entries.forEach(entry => {
if (entry.isIntersecting) {
links.forEach(l => l.classList.remove('active'));
const target = document.querySelector(`.nav-link[href="#${entry.target.id}"]`);
if (target) target.classList.add('active');
}
});
},
{ rootMargin: '-10% 0px -80% 0px' }
);
sections.forEach(s => { if (s.id) observer.observe(s); });
})();
</script>
{% endblock %}
@@ -0,0 +1,541 @@
{% extends 'scanner/base.html' %}
{% load i18n %}
{% block columns %}{% endblock %}
{% block styles %}
{{ block.super }}
<link rel="stylesheet" href="/static/css/doc_database.css">
<link rel="stylesheet" href="/static/css/doc_calibration.css>
<link rel="stylesheet" href="/static/css/doc_experiments.css">
{% endblock %}
{% block content %}
<div class="doc-wrapper">
<!-- ─── En-tête ─── -->
<header class="doc-header">
<div class="doc-header-inner">
<div class="doc-header-icon" style="background: linear-gradient(135deg, var(--accent-green), var(--accent-teal));">
<i class="fas fa-flask"></i>
</div>
<div>
<h1 class="doc-title">{% trans "Démarrer des expériences" %}</h1>
<p class="doc-subtitle">{% trans "Sessions, expériences, configurations et import CSV — interface Administration Django" %}</p>
</div>
</div>
</header>
<!-- ─── Navigation latérale ─── -->
<nav class="doc-sidenav" id="sidenav">
<p class="nav-section-label">{% trans "Navigation" %}</p>
<a href="#section-intro" class="nav-link active"><i class="fas fa-info-circle"></i> {% trans "Présentation" %}</a>
<a href="#section-workflow" class="nav-link"> <i class="fas fa-random"></i> {% trans "Ordre de création" %}</a>
<a href="#section-session" class="nav-link"> <i class="fas fa-play-circle"></i> {% trans "Session" %}</a>
<a href="#section-session-data" class="nav-link nav-sub"><i class="fas fa-table"></i> {% trans "Données" %}</a>
<a href="#section-session-tasks" class="nav-link nav-sub"><i class="fas fa-clock"></i> {% trans "Tâches périodiques" %}</a>
<a href="#section-experiment" class="nav-link"> <i class="fas fa-vial"></i> {% trans "Expérience" %}</a>
<a href="#section-exp-data" class="nav-link nav-sub"><i class="fas fa-table"></i> {% trans "Données" %}</a>
<a href="#section-exp-create" class="nav-link nav-sub"><i class="fas fa-magic"></i> {% trans "Création automatique" %}</a>
<a href="#section-metrics" class="nav-link nav-sub"><i class="fas fa-chart-line"></i> {% trans "Métriques" %}</a>
<a href="#section-config" class="nav-link"> <i class="fas fa-cog"></i> {% trans "Configuration puits" %}</a>
<a href="#section-csv" class="nav-link"> <i class="fas fa-file-csv"></i> {% trans "Import CSV" %}</a>
</nav>
<!-- ─── Contenu principal ─── -->
<main class="doc-content">
<!-- ============================================================ -->
<!-- SECTION 1 : Présentation -->
<!-- ============================================================ -->
<section class="doc-section" id="section-intro">
<div class="section-header">
<span class="section-badge badge-green">{% trans "Administration Django" %}</span>
<h2><i class="fas fa-flask"></i> {% trans "Démarrer des expériences" %}</h2>
<p class="section-desc">
{% trans "C'est l'interface Administration Django qui est chargée de créer les données." %}
</p>
</div>
<div class="info-row">
<div class="info-card card-accent-green full-width">
<div class="card-icon"><i class="fas fa-th-large"></i></div>
<div class="card-body">
<h4>{% trans "Principe général" %}</h4>
<ul class="doc-list">
<li>
<i class="fas fa-link text-green"></i>
{% trans "Une expérience est toujours affectée à un multi-puits." %}
</li>
<li>
<i class="fas fa-th text-green"></i>
{% trans "Il y a 4 emplacements multi-puits, donc" %}
<strong>{% trans "4 expériences maximum par session." %}</strong>
</li>
</ul>
</div>
</div>
</div>
</section>
<!-- ============================================================ -->
<!-- SECTION 2 : Ordre de création -->
<!-- ============================================================ -->
<section class="doc-section" id="section-workflow">
<div class="section-header">
<span class="section-badge badge-blue">{% trans "Workflow" %}</span>
<h2><i class="fas fa-random"></i> {% trans "Ordre de création" %}</h2>
<p class="section-desc">{% trans "Les deux approches sont équivalentes — au choix." %}</p>
</div>
<div class="info-row">
<!-- Option A -->
<div class="info-card card-accent-indigo">
<div class="card-icon"><i class="fas fa-list-ol"></i></div>
<div class="card-body">
<h4><i class="fas fa-play-circle text-indigo"></i> {% trans "Option A — Session en premier" %}</h4>
<ol class="doc-steps">
<li><i class="fas fa-plus-circle"></i> {% trans "Créer la session" %}</li>
<li><i class="fas fa-vial"></i> {% trans "Créer les expériences (4 maxi)" %}</li>
<li><i class="fas fa-link"></i> {% trans "Revenir sur la session et ajouter les expériences" %}</li>
</ol>
</div>
</div>
<!-- Option B -->
<div class="info-card card-accent-blue">
<div class="card-icon"><i class="fas fa-list-ol"></i></div>
<div class="card-body">
<h4><i class="fas fa-vial text-blue"></i> {% trans "Option B — Expériences en premier" %}</h4>
<ol class="doc-steps">
<li><i class="fas fa-vial"></i> {% trans "Créer les expériences" %}</li>
<li><i class="fas fa-plus-circle"></i> {% trans "Créer la session" %}</li>
<li><i class="fas fa-link"></i> {% trans "Ajouter les expériences à la session" %}</li>
</ol>
</div>
</div>
</div>
</section>
<!-- ============================================================ -->
<!-- SECTION 3 : Session -->
<!-- ============================================================ -->
<section class="doc-section" id="section-session">
<div class="section-header">
<span class="section-badge badge-purple">scanner_session</span>
<h2><i class="fas fa-play-circle"></i> {% trans "Session" %}</h2>
</div>
<!-- Données importantes -->
<div class="sub-subsection" id="section-session-data">
<h4 class="table-title">
<i class="fas fa-table"></i> {% trans "Données importantes" %}
</h4>
<div class="info-row">
<div class="info-card card-accent-purple">
<div class="card-icon"><i class="fas fa-id-card"></i></div>
<div class="card-body">
<h4>{% trans "Identification" %}</h4>
<ul class="doc-list">
<li><i class="fas fa-heading text-purple"></i> {% trans "Titre" %}</li>
<li><i class="fas fa-user text-purple"></i> {% trans "Auteur" %}</li>
</ul>
</div>
</div>
<!-- Expériences de la session -->
<div class="info-card card-accent-indigo">
<div class="card-icon"><i class="fas fa-layer-group"></i></div>
<div class="card-body">
<h4>{% trans "Expériences d'une session" %}</h4>
<p>{% trans "Ajouter les expériences à la suite dans l'inline" %} <code>scanner_sessionexperiment</code>.</p>
<div class="tag-list">
<span class="tag tag-blue">{% trans "4 maximum" %}</span>
</div>
</div>
</div>
</div>
</div>
<!-- Tâches périodiques -->
<div class="sub-subsection" id="section-session-tasks">
<h4 class="table-title">
<i class="fas fa-clock"></i> {% trans "Options tâches périodiques" %}
</h4>
<div class="info-row">
<div class="info-card card-accent-orange">
<div class="card-icon"><i class="fas fa-file-export"></i></div>
<div class="card-body">
<h4>{% trans "Date d'exportation" %}</h4>
<p>{% trans "Crée une tâche différée pour exporter automatiquement les images et vidéos à la date choisie." %}</p>
<div class="tag-list">
<span class="tag tag-orange">export_session</span>
</div>
</div>
</div>
<div class="info-card card-accent-teal">
<div class="card-icon"><i class="fas fa-calendar-alt"></i></div>
<div class="card-body">
<h4>{% trans "Date du balayage" %}</h4>
<p>{% trans "Planifie le déclenchement du balayage de la session à une date ultérieure." %}</p>
<div class="tag-list">
<span class="tag tag-teal">scanning_session</span>
</div>
</div>
</div>
</div>
</div>
</section>
<!-- ============================================================ -->
<!-- SECTION 4 : Expérience -->
<!-- ============================================================ -->
<section class="doc-section" id="section-experiment">
<div class="section-header">
<span class="section-badge badge-green">scanner_experiment</span>
<h2><i class="fas fa-vial"></i> {% trans "Expérience" %}</h2>
</div>
<!-- Données -->
<div class="sub-subsection" id="section-exp-data">
<h4 class="table-title"><i class="fas fa-table"></i> {% trans "Données" %}</h4>
<div class="info-row">
<div class="info-card card-accent-green">
<div class="card-icon"><i class="fas fa-id-card"></i></div>
<div class="card-body">
<h4>{% trans "Identification" %}</h4>
<ul class="doc-list">
<li><i class="fas fa-heading text-green"></i> {% trans "Titre" %}</li>
<li><i class="fas fa-user text-green"></i> {% trans "Auteur" %}</li>
<li><i class="fas fa-comment-alt text-green"></i> {% trans "Commentaires" %}</li>
</ul>
</div>
</div>
<div class="info-card card-accent-red">
<div class="card-icon"><i class="fas fa-exclamation-circle"></i></div>
<div class="card-body">
<h4>{% trans "Paramètres critiques" %} <span class="badge-important">{% trans "IMPORTANT" %}</span></h4>
<ul class="doc-list">
<li>
<i class="fas fa-th text-red"></i>
{% trans "Choix du multi-puits" %}
</li>
<li>
<i class="fas fa-stopwatch text-red"></i>
{% trans "Durée de la prise de vue (secondes)" %}
</li>
</ul>
</div>
</div>
</div>
</div>
<!-- Création automatique -->
<div class="sub-subsection" id="section-exp-create">
<h4 class="table-title">
<i class="fas fa-magic"></i> {% trans "Fonctionnement à la création" %}
</h4>
<div class="info-row">
<!-- experimentwell -->
<div class="info-card card-accent-blue">
<div class="card-icon"><i class="fas fa-circle-notch"></i></div>
<div class="card-body">
<h4>{% trans "Création/MAJ" %} <code>scanner.experimentwell</code></h4>
<ul class="doc-list">
<li>
<i class="fas fa-plus text-blue"></i>
{% trans "Création de chaque puit individuel." %}
</li>
<li>
<i class="fas fa-check-circle text-green"></i>
{% trans "Par défaut, tous les puits sont actifs." %}
</li>
</ul>
<div class="alert-box alert-info">
<i class="fas fa-info-circle"></i>
{% trans "Il est possible d'ignorer le balayage d'un ou plusieurs puits au choix." %}
</div>
</div>
</div>
<!-- experimentconfig -->
<div class="info-card card-accent-cyan">
<div class="card-icon"><i class="fas fa-sliders-h"></i></div>
<div class="card-body">
<h4>{% trans "Création/MAJ" %} <code>planarian.experimentconfig</code></h4>
<p>{% trans "Paramètres d'une expérience PlanarianScanner." %}</p>
<ul class="doc-list">
<li>
<i class="fas fa-user-cog text-cyan"></i>
{% trans "Créé depuis Django admin" %}
</li>
<li>
<i class="fas fa-file-csv text-cyan"></i>
{% trans "Ou import CSV depuis l'admin" %}
</li>
<li>
<i class="fas fa-pencil-alt text-muted"></i>
<em>{% trans "Données descriptives supplémentaires (à définir)" %}</em>
</li>
</ul>
</div>
</div>
</div>
</div>
<!-- Métriques -->
<div class="sub-subsection" id="section-metrics">
<h4 class="table-title">
<i class="fas fa-chart-line"></i>
{% trans "Intégration métriques EthoVision XT + comportementales" %}
</h4>
<!-- Métriques par frame -->
<h5 class="metrics-group-title">
<i class="fas fa-film"></i> {% trans "Métriques par frame" %}
</h5>
<div class="info-row">
<div class="info-card card-accent-blue metrics-card">
<div class="card-icon"><i class="fas fa-running"></i></div>
<div class="card-body">
<h4>{% trans "Mobilité" %}</h4>
<div class="metric-tags">
<span class="tag tag-blue">velocity</span>
<span class="tag tag-blue">distance</span>
<span class="tag tag-blue">moving</span>
<span class="tag tag-blue">mobility_state</span>
</div>
</div>
</div>
<div class="info-card card-accent-orange metrics-card">
<div class="card-icon"><i class="fas fa-border-style"></i></div>
<div class="card-body">
<h4>{% trans "Thigmotaxie" %}</h4>
<div class="metric-tags">
<span class="tag tag-orange">dist_to_wall_mm</span>
<span class="tag tag-orange">near_wall</span>
</div>
</div>
</div>
<div class="info-card card-accent-yellow metrics-card">
<div class="card-icon"><i class="fas fa-sun"></i></div>
<div class="card-body">
<h4>{% trans "Phototaxie" %}</h4>
<div class="metric-tags">
<span class="tag tag-yellow">dist_to_light_mm</span>
<span class="tag tag-yellow">heading_to_light_deg</span>
<span class="tag tag-yellow">fleeing_light</span>
</div>
</div>
</div>
</div>
<div class="info-row">
<div class="info-card card-accent-green metrics-card">
<div class="card-icon"><i class="fas fa-utensils"></i></div>
<div class="card-body">
<h4>{% trans "Chimiotaxie" %}</h4>
<div class="metric-tags">
<span class="tag tag-green">dist_to_food_mm</span>
<span class="tag tag-green">heading_to_food_deg</span>
<span class="tag tag-green">approaching_food</span>
<span class="tag tag-green">in_food_zone</span>
</div>
</div>
</div>
<div class="info-card card-accent-purple metrics-card">
<div class="card-icon"><i class="fas fa-users"></i></div>
<div class="card-body">
<h4>{% trans "Social" %}</h4>
<div class="metric-tags">
<span class="tag tag-purple">nearest_neighbour_mm</span>
<span class="tag tag-purple">in_avoid_zone</span>
<span class="tag tag-purple">in_aggreg_zone</span>
<span class="tag tag-purple">chem_repulsion_level</span>
</div>
</div>
</div>
</div>
<!-- Métriques résumé -->
<h5 class="metrics-group-title" style="margin-top:20px;">
<i class="fas fa-clipboard-list"></i> {% trans "Métriques résumé (summary)" %}
</h5>
<div class="info-row">
<div class="info-card card-accent-blue metrics-card">
<div class="card-icon"><i class="fas fa-running"></i></div>
<div class="card-body">
<h4>{% trans "Mobilité" %}</h4>
<div class="metric-tags">
<span class="tag tag-blue">movedCenter_pointTotal_mm</span>
<span class="tag tag-blue">velocity_mean_mm_s</span>
<span class="tag tag-blue">{% trans "durations par état" %}</span>
</div>
</div>
</div>
<div class="info-card card-accent-orange metrics-card">
<div class="card-icon"><i class="fas fa-border-style"></i></div>
<div class="card-body">
<h4>{% trans "Thigmotaxie" %}</h4>
<div class="metric-tags">
<span class="tag tag-orange">thigmotaxis_pct_time_near_wall</span>
</div>
</div>
</div>
<div class="info-card card-accent-yellow metrics-card">
<div class="card-icon"><i class="fas fa-sun"></i></div>
<div class="card-body">
<h4>{% trans "Phototaxie" %}</h4>
<div class="metric-tags">
<span class="tag tag-yellow">photo_pct_time_fleeing</span>
<span class="tag tag-yellow">photo_mean_dist_mm</span>
<span class="tag tag-yellow">photo_latency_s</span>
</div>
</div>
</div>
</div>
<div class="info-row">
<div class="info-card card-accent-green metrics-card">
<div class="card-icon"><i class="fas fa-utensils"></i></div>
<div class="card-body">
<h4>{% trans "Chimiotaxie" %}</h4>
<div class="metric-tags">
<span class="tag tag-green">chemo_pct_time_approaching</span>
<span class="tag tag-green">chemo_pct_time_in_zone</span>
<span class="tag tag-green">chemo_latency_s</span>
<span class="tag tag-green">chemo_mean_dist_mm</span>
</div>
</div>
</div>
<div class="info-card card-accent-purple metrics-card">
<div class="card-icon"><i class="fas fa-users"></i></div>
<div class="card-body">
<h4>{% trans "Social" %}</h4>
<div class="metric-tags">
<span class="tag tag-purple">social_pct_time_avoiding</span>
<span class="tag tag-purple">social_pct_time_aggregating</span>
<span class="tag tag-purple">social_mean_nn_mm</span>
<span class="tag tag-purple">social_contact_events</span>
</div>
</div>
</div>
</div>
</div>
</section>
<!-- ============================================================ -->
<!-- SECTION 5 : Configuration des puits -->
<!-- ============================================================ -->
<section class="doc-section" id="section-config">
<div class="section-header">
<span class="section-badge badge-teal">{% trans "Interface Scanner" %}</span>
<h2><i class="fas fa-cog"></i> {% trans "Configuration des expériences" %}</h2>
<p class="section-desc">{% trans "Sélectionner l'expérience et le puit à modifier pour compléter la fiche." %}</p>
</div>
<div class="info-row">
<div class="info-card card-accent-teal full-width">
<div class="card-icon"><i class="fas fa-edit"></i></div>
<div class="card-body">
<h4>{% trans "Procédure" %}</h4>
<ol class="doc-steps">
<li><i class="fas fa-mouse-pointer"></i> {% trans "Sélectionner l'expérience dans la liste" %}</li>
<li><i class="fas fa-circle"></i> {% trans "Sélectionner le puit à modifier" %}</li>
<li><i class="fas fa-pen"></i> {% trans "Compléter la fiche de configuration" %}</li>
</ol>
</div>
</div>
</div>
</section>
<!-- ============================================================ -->
<!-- SECTION 6 : Import CSV -->
<!-- ============================================================ -->
<section class="doc-section" id="section-csv">
<div class="section-header">
<span class="section-badge badge-orange">{% trans "Import" %}</span>
<h2><i class="fas fa-file-csv"></i> {% trans "Importer des configurations depuis CSV" %}</h2>
</div>
<div class="info-row">
<!-- Menu gauche -->
<div class="info-card card-accent-indigo">
<div class="card-icon"><i class="fas fa-bars"></i></div>
<div class="card-body">
<h4>{% trans "Menu gauche" %}</h4>
<ol class="doc-steps">
<li><i class="fas fa-play-circle"></i> {% trans "Sélectionner la session" %}</li>
<li><i class="fas fa-check-square"></i> {% trans "Cocher l'expérience souhaitée" %}</li>
</ol>
</div>
</div>
<!-- Zone de dépôt -->
<div class="info-card card-accent-blue">
<div class="card-icon"><i class="fas fa-cloud-upload-alt"></i></div>
<div class="card-body">
<h4>{% trans "Zone d'import" %}</h4>
<ol class="doc-steps">
<li><i class="fas fa-file-csv"></i> {% trans "Glisser-déposer le fichier CSV" %}</li>
<li><i class="fas fa-upload"></i> {% trans "Cliquer sur Importer" %}</li>
</ol>
</div>
</div>
</div>
<!-- Astuce CSV -->
<div class="info-row">
<div class="info-card card-accent-yellow full-width">
<div class="card-icon"><i class="fas fa-lightbulb"></i></div>
<div class="card-body">
<h4>{% trans "Astuce — Générer le template CSV depuis Django admin" %}</h4>
<ol class="doc-steps">
<li>
<i class="fas fa-th-list"></i>
{% trans "Aller dans" %}
<strong>{% trans "Planarian Configurations des expériences" %}</strong>
</li>
<li>
<i class="fas fa-check-square"></i>
{% trans "Cocher le puit de l'expérience ou un groupe d'expériences" %}
</li>
<li>
<i class="fas fa-bolt"></i>
{% trans "Action :" %} <strong>{% trans "Exporter un template CSV…" %}</strong>
</li>
<li>
<i class="fas fa-download"></i>
{% trans "Vérifier l'emplacement du fichier téléchargé (dossier Download)." %}
</li>
</ol>
</div>
</div>
</div>
</section>
</main>
</div>
{% endblock %}
{% block js_footer %}
{{ block.super }}
<script>
/* Mise en évidence du lien actif dans la navigation latérale */
(function () {
const links = document.querySelectorAll('.nav-link');
const sections = document.querySelectorAll('[id^="section-"]');
const observer = new IntersectionObserver(
(entries) => {
entries.forEach(entry => {
if (entry.isIntersecting) {
links.forEach(l => l.classList.remove('active'));
const target = document.querySelector(`.nav-link[href="#${entry.target.id}"]`);
if (target) target.classList.add('active');
}
});
},
{ rootMargin: '-10% 0px -80% 0px' }
);
sections.forEach(s => observer.observe(s));
})();
</script>
{% endblock %}
@@ -0,0 +1,287 @@
{% extends 'scanner/base.html' %}
{% load i18n %}
{% block columns %}{% endblock %}
{% block styles %}
{{ block.super }}
<link rel="stylesheet" href="/static/css/doc_database.css">
<link rel="stylesheet" href="/static/css/doc_calibration.css>
<link rel="stylesheet" href="/static/css/doc_experiments.css">
<link rel="stylesheet" href="/static/css/doc_scanning.css">
<link rel="stylesheet" href="/static/css/doc_results.css">
<link rel="stylesheet" href="/static/css/doc_media.css">
{% endblock %}
{% block content %}
<div class="doc-wrapper">
<!-- ─── En-tête ─── -->
<header class="doc-header">
<div class="doc-header-inner">
<div class="doc-header-icon" style="background: linear-gradient(135deg, var(--accent-purple), var(--accent-blue));">
<i class="fas fa-photo-video"></i>
</div>
<div>
<h1 class="doc-title">{% trans "Gestionnaire de médias" %}</h1>
<p class="doc-subtitle">{% trans "Consultation, rediffusion et export des images et vidéos" %}</p>
</div>
</div>
</header>
<!-- ─── Navigation latérale ─── -->
<nav class="doc-sidenav" id="sidenav">
<p class="nav-section-label">{% trans "Navigation" %}</p>
<a href="#section-grid" class="nav-link active"><i class="fas fa-th"></i> {% trans "Grille d'affichage" %}</a>
<a href="#section-images" class="nav-link"> <i class="fas fa-images"></i> {% trans "Gestionnaire d'images" %}</a>
<a href="#section-img-nav" class="nav-link nav-sub"><i class="fas fa-bars"></i> {% trans "Menu gauche" %}</a>
<a href="#section-img-view"class="nav-link nav-sub"><i class="fas fa-eye"></i> {% trans "Affichage & export" %}</a>
<a href="#section-videos" class="nav-link"> <i class="fas fa-film"></i> {% trans "Rediffusion vidéos" %}</a>
<a href="#section-vid-nav" class="nav-link nav-sub"><i class="fas fa-bars"></i> {% trans "Menu gauche" %}</a>
<a href="#section-vid-view"class="nav-link nav-sub"><i class="fas fa-play-circle"></i> {% trans "Lecteur & export" %}</a>
</nav>
<!-- ─── Contenu principal ─── -->
<main class="doc-content">
<!-- ============================================================ -->
<!-- SECTION 1 : Grille d'affichage -->
<!-- ============================================================ -->
<section class="doc-section" id="section-grid">
<div class="section-header">
<span class="section-badge badge-purple">{% trans "Affichage" %}</span>
<h2><i class="fas fa-th"></i> {% trans "Grille d'affichage" %}</h2>
<p class="section-desc">{% trans "Contrôle situé en haut à gauche de l'interface." %}</p>
</div>
<div class="info-row">
<div class="info-card card-accent-purple full-width">
<div class="card-icon"><i class="fas fa-columns"></i></div>
<div class="card-body">
<h4>{% trans "Nombre de colonnes" %}</h4>
<p>{% trans "Réduire ou augmenter dynamiquement le nombre de colonnes d'affichage des médias." %}</p>
<!-- Visualisation colonnes -->
<div class="grid-preview">
<div class="gp-col"><i class="fas fa-minus"></i></div>
<div class="gp-demo gp-2">
<span></span><span></span>
</div>
<div class="gp-demo gp-3">
<span></span><span></span><span></span>
</div>
<div class="gp-demo gp-4">
<span></span><span></span><span></span><span></span>
</div>
<div class="gp-col"><i class="fas fa-plus"></i></div>
</div>
</div>
</div>
</div>
</section>
<!-- ============================================================ -->
<!-- SECTION 2 : Gestionnaire d'images -->
<!-- ============================================================ -->
<section class="doc-section" id="section-images">
<div class="section-header">
<span class="section-badge badge-blue">{% trans "Images" %}</span>
<h2><i class="fas fa-images"></i> {% trans "Gestionnaire d'images" %}</h2>
</div>
<!-- Menu gauche -->
<div class="sub-subsection" id="section-img-nav">
<h4 class="table-title"><i class="fas fa-bars"></i> {% trans "Menu gauche — Sélection" %}</h4>
<div class="info-row">
<div class="info-card card-accent-indigo full-width">
<div class="card-icon"><i class="fas fa-mouse-pointer"></i></div>
<div class="card-body">
<ol class="doc-steps">
<li><i class="fas fa-play-circle"></i> {% trans "Sélectionner la session" %}</li>
<li><i class="fas fa-check-square"></i> {% trans "Cocher l'expérience" %}</li>
<li><i class="fas fa-circle"></i> {% trans "Choisir le puit" %}</li>
</ol>
</div>
</div>
</div>
</div>
<!-- Affichage & export -->
<div class="sub-subsection" id="section-img-view">
<h4 class="table-title"><i class="fas fa-eye"></i> {% trans "Affichage des images & export" %}</h4>
<div class="info-row">
<!-- Téléchargement unitaire -->
<div class="info-card card-accent-blue">
<div class="card-icon"><i class="fas fa-download"></i></div>
<div class="card-body">
<h4>{% trans "Téléchargement unitaire" %}</h4>
<p>{% trans "Chaque image affichée dispose d'un bouton de téléchargement individuel." %}</p>
</div>
</div>
<!-- Export global images -->
<div class="info-card card-accent-orange">
<div class="card-icon"><i class="fas fa-file-archive"></i></div>
<div class="card-body">
<h4>
{% trans "Exporter l'ensemble des images" %}
<span class="badge-important">{% trans "ATTENTION" %}</span>
</h4>
<ul class="doc-list">
<li>
<i class="fas fa-hourglass-half text-orange"></i>
{% trans "La procédure peut être longue." %}
</li>
<li>
<i class="fas fa-clock text-orange"></i>
{% trans "Préférer l'export différé." %}
</li>
</ul>
<div class="deferred-badge">
<i class="fas fa-calendar-alt"></i>
{% trans "Export différé recommandé" %}
</div>
</div>
</div>
</div>
</div>
</section>
<!-- ============================================================ -->
<!-- SECTION 3 : Rediffusion de vidéos -->
<!-- ============================================================ -->
<section class="doc-section" id="section-videos">
<div class="section-header">
<span class="section-badge badge-teal">{% trans "Vidéos" %}</span>
<h2><i class="fas fa-film"></i> {% trans "Rediffusion de vidéos" %}</h2>
</div>
<!-- Menu gauche -->
<div class="sub-subsection" id="section-vid-nav">
<h4 class="table-title"><i class="fas fa-bars"></i> {% trans "Menu gauche — Sélection" %}</h4>
<div class="info-row">
<div class="info-card card-accent-indigo full-width">
<div class="card-icon"><i class="fas fa-mouse-pointer"></i></div>
<div class="card-body">
<ol class="doc-steps">
<li><i class="fas fa-play-circle"></i> {% trans "Sélectionner la session" %}</li>
<li><i class="fas fa-check-square"></i> {% trans "Cocher l'expérience" %}</li>
<li><i class="fas fa-circle"></i> {% trans "Choisir le puit" %}</li>
</ol>
</div>
</div>
</div>
</div>
<!-- Lecteur & export -->
<div class="sub-subsection" id="section-vid-view">
<h4 class="table-title"><i class="fas fa-play-circle"></i> {% trans "Lecteur vidéo & export" %}</h4>
<div class="info-row">
<!-- Contrôles lecture -->
<div class="info-card card-accent-teal">
<div class="card-icon"><i class="fas fa-gamepad"></i></div>
<div class="card-body">
<h4>{% trans "Contrôles de lecture" %}</h4>
<!-- Boutons transport -->
<div class="player-controls">
<div class="player-btn btn-play">
<i class="fas fa-play"></i>
<span>{% trans "Marche" %}</span>
</div>
<div class="player-btn btn-pause">
<i class="fas fa-pause"></i>
<span>{% trans "Pause" %}</span>
</div>
<div class="player-btn btn-stop">
<i class="fas fa-stop"></i>
<span>{% trans "Arrêt" %}</span>
</div>
</div>
<!-- Sliders -->
<ul class="doc-list" style="margin-top:12px;">
<li>
<i class="fas fa-tachometer-alt text-teal"></i>
{% trans "Slider vitesse de lecture" %}
</li>
<li>
<i class="fas fa-stream text-teal"></i>
{% trans "Slider timeline (position dans la vidéo)" %}
</li>
</ul>
</div>
</div>
<!-- Téléchargements -->
<div class="info-card card-accent-blue">
<div class="card-icon"><i class="fas fa-download"></i></div>
<div class="card-body">
<h4>{% trans "Téléchargements" %}</h4>
<ul class="doc-list">
<li>
<i class="fas fa-image text-blue"></i>
{% trans "Télécharger l'image courante" %}
</li>
<li>
<i class="fas fa-film text-blue"></i>
{% trans "Télécharger la vidéo complète" %}
</li>
</ul>
</div>
</div>
</div>
<!-- Export global vidéos -->
<div class="info-row">
<div class="info-card card-accent-orange full-width">
<div class="card-icon"><i class="fas fa-file-video"></i></div>
<div class="card-body">
<h4>
{% trans "Exporter l'ensemble des vidéos" %}
<span class="badge-important">{% trans "ATTENTION" %}</span>
</h4>
<ul class="doc-list">
<li>
<i class="fas fa-hourglass-half text-orange"></i>
{% trans "La procédure peut être longue." %}
</li>
<li>
<i class="fas fa-clock text-orange"></i>
{% trans "Préférer l'export différé." %}
</li>
</ul>
<div class="deferred-badge">
<i class="fas fa-calendar-alt"></i>
{% trans "Export différé recommandé" %}
</div>
</div>
</div>
</div>
</div>
</section>
</main>
</div>
{% endblock %}
{% block js_footer %}
{{ block.super }}
<script>
/* Mise en évidence du lien actif dans la navigation latérale */
(function () {
const links = document.querySelectorAll('.nav-link');
const sections = document.querySelectorAll('[id^="section-"]');
const observer = new IntersectionObserver(
(entries) => {
entries.forEach(entry => {
if (entry.isIntersecting) {
links.forEach(l => l.classList.remove('active'));
const target = document.querySelector(`.nav-link[href="#${entry.target.id}"]`);
if (target) target.classList.add('active');
}
});
},
{ rootMargin: '-10% 0px -80% 0px' }
);
sections.forEach(s => observer.observe(s));
})();
</script>
{% endblock %}
@@ -0,0 +1,204 @@
{% extends 'scanner/base.html' %}
{% load i18n %}
{% block columns %}{% endblock %}
{% block styles %}
{{ block.super }}
<link rel="stylesheet" href="/static/css/doc_database.css">
<link rel="stylesheet" href="/static/css/doc_calibration.css>
<link rel="stylesheet" href="/static/css/doc_experiments.css">
<link rel="stylesheet" href="/static/css/doc_scanning.css">
<link rel="stylesheet" href="/static/css/doc_results.css">
{% endblock %}
{% block content %}
<div class="doc-wrapper">
<!-- ─── En-tête ─── -->
<header class="doc-header">
<div class="doc-header-inner">
<div class="doc-header-icon" style="background: linear-gradient(135deg, var(--accent-green), var(--accent-blue));">
<i class="fas fa-chart-bar"></i>
</div>
<div>
<h1 class="doc-title">{% trans "Exploiter les résultats" %}</h1>
<p class="doc-subtitle">{% trans "Export CSV des métriques par session, expérience et planaire" %}</p>
</div>
</div>
</header>
<!-- ─── Navigation latérale ─── -->
<nav class="doc-sidenav" id="sidenav">
<p class="nav-section-label">{% trans "Navigation" %}</p>
<a href="#section-intro" class="nav-link active"><i class="fas fa-info-circle"></i> {% trans "Présentation" %}</a>
<a href="#section-left" class="nav-link"> <i class="fas fa-bars"></i> {% trans "Menu gauche" %}</a>
<a href="#section-export" class="nav-link nav-sub"><i class="fas fa-server"></i> {% trans "Export serveur" %}</a>
<a href="#section-right" class="nav-link"> <i class="fas fa-download"></i> {% trans "Partie droite" %}</a>
<a href="#section-generate" class="nav-link nav-sub"><i class="fas fa-file-csv"></i> {% trans "Générer le CSV" %}</a>
</nav>
<!-- ─── Contenu principal ─── -->
<main class="doc-content">
<!-- ============================================================ -->
<!-- SECTION 1 : Présentation -->
<!-- ============================================================ -->
<section class="doc-section" id="section-intro">
<div class="section-header">
<span class="section-badge badge-green">{% trans "Export CSV" %}</span>
<h2><i class="fas fa-chart-bar"></i> {% trans "Exploiter les résultats des expériences" %}</h2>
<p class="section-desc">{% trans "Les métriques de suivi des planaires sont exportables au format CSV depuis l'interface Scanner." %}</p>
</div>
</section>
<!-- ============================================================ -->
<!-- SECTION 2 : Menu gauche -->
<!-- ============================================================ -->
<section class="doc-section" id="section-left">
<div class="section-header">
<span class="section-badge badge-blue">{% trans "Sélection" %}</span>
<h2><i class="fas fa-bars"></i> {% trans "Menu gauche" %}</h2>
</div>
<div class="info-row">
<div class="info-card card-accent-indigo">
<div class="card-icon"><i class="fas fa-mouse-pointer"></i></div>
<div class="card-body">
<h4>{% trans "Sélection" %}</h4>
<ol class="doc-steps">
<li><i class="fas fa-play-circle"></i> {% trans "Sélectionner la session" %}</li>
<li><i class="fas fa-check-square"></i> {% trans "Cocher l'expérience souhaitée" %}</li>
<li><i class="fas fa-file-export"></i> {% trans "Cliquer sur Exporter les métriques de l'expérience" %}</li>
</ol>
</div>
</div>
</div>
<!-- Export serveur -->
<div class="sub-subsection" id="section-export">
<h4 class="table-title">
<i class="fas fa-server"></i> {% trans "Export côté serveur" %}
<span class="badge-important">{% trans "ATTENTION" %}</span>
</h4>
<div class="info-row">
<!-- Durée -->
<div class="info-card card-accent-orange">
<div class="card-icon"><i class="fas fa-hourglass-half"></i></div>
<div class="card-body">
<h4>{% trans "Durée variable" %}</h4>
<div class="alert-box" style="margin-bottom:0;">
<i class="fas fa-exclamation-triangle"></i>
{% trans "La procédure peut être longue selon le nombre de planaires à suivre." %}
</div>
</div>
</div>
<!-- Tâche de fond -->
<div class="info-card card-accent-blue">
<div class="card-icon"><i class="fas fa-cogs"></i></div>
<div class="card-body">
<h4>{% trans "Tâche de fond" %}</h4>
<p>{% trans "Le service est exécuté en arrière-plan (Celery)." %}</p>
<div class="tag-list">
<span class="tag tag-blue">export_session</span>
</div>
</div>
</div>
</div>
<!-- Emplacement fichiers -->
<div class="info-row">
<div class="info-card card-accent-teal full-width">
<div class="card-icon"><i class="fas fa-folder-open"></i></div>
<div class="card-body">
<h4>{% trans "Emplacement des fichiers sur le serveur" %}</h4>
<div class="path-block">
<i class="fas fa-hdd"></i>
<code>/home/rpi4/export/csv/*.csv</code>
</div>
</div>
</div>
</div>
</div>
</section>
<!-- ============================================================ -->
<!-- SECTION 3 : Partie droite — téléchargement client -->
<!-- ============================================================ -->
<section class="doc-section" id="section-right">
<div class="section-header">
<span class="section-badge badge-green">{% trans "Téléchargement" %}</span>
<h2><i class="fas fa-download"></i> {% trans "Partie droite — Téléchargement client" %}</h2>
</div>
<div class="sub-subsection" id="section-generate">
<div class="info-row">
<!-- Sélections -->
<div class="info-card card-accent-indigo">
<div class="card-icon"><i class="fas fa-sliders-h"></i></div>
<div class="card-body">
<h4>{% trans "Paramètres" %}</h4>
<ul class="doc-list">
<li>
<i class="fas fa-circle text-teal"></i>
{% trans "Choisir le puit" %}
</li>
<li>
<i class="fas fa-hashtag text-indigo"></i>
{% trans "Choisir l'index du planaire" %}
<p class="task-desc">
<i class="fas fa-info-circle"></i>
{% trans "Le nombre de planaires est défini dans" %}
<em>{% trans "Paramètres d'une expérience" %}</em>.
</p>
</li>
</ul>
</div>
</div>
<!-- Bouton Générer -->
<div class="info-card card-accent-green">
<div class="card-icon"><i class="fas fa-file-download"></i></div>
<div class="card-body">
<h4>{% trans "Bouton Générer" %}</h4>
<p>{% trans "Télécharge le fichier CSV directement sur le poste client." %}</p>
<div class="alert-box alert-info">
<i class="fas fa-hourglass-half"></i>
{% trans "La procédure peut être longue." %}
</div>
</div>
</div>
</div>
</div>
</section>
</main>
</div>
{% endblock %}
{% block js_footer %}
{{ block.super }}
<script>
/* Mise en évidence du lien actif dans la navigation latérale */
(function () {
const links = document.querySelectorAll('.nav-link');
const sections = document.querySelectorAll('[id^="section-"]');
const observer = new IntersectionObserver(
(entries) => {
entries.forEach(entry => {
if (entry.isIntersecting) {
links.forEach(l => l.classList.remove('active'));
const target = document.querySelector(`.nav-link[href="#${entry.target.id}"]`);
if (target) target.classList.add('active');
}
});
},
{ rootMargin: '-10% 0px -80% 0px' }
);
sections.forEach(s => observer.observe(s));
})();
</script>
{% endblock %}
@@ -0,0 +1,266 @@
{% extends 'scanner/base.html' %}
{% load i18n %}
{% block columns %}{% endblock %}
{% block styles %}
{{ block.super }}
<link rel="stylesheet" href="/static/css/doc_database.css">
<link rel="stylesheet" href="/static/css/doc_calibration.css>
<link rel="stylesheet" href="/static/css/doc_experiments.css">
<link rel="stylesheet" href="/static/css/doc_scanning.css">
{% endblock %}
{% block content %}
<div class="doc-wrapper">
<!-- ─── En-tête ─── -->
<header class="doc-header">
<div class="doc-header-inner">
<div class="doc-header-icon" style="background: linear-gradient(135deg, var(--accent-indigo), var(--accent-purple));">
<i class="fas fa-route"></i>
</div>
<div>
<h1 class="doc-title">{% trans "Balayage des puits" %}</h1>
<p class="doc-subtitle">{% trans "Lancement, suivi et procédure en cas d'arrêt" %}</p>
</div>
</div>
</header>
<!-- ─── Navigation latérale ─── -->
<nav class="doc-sidenav" id="sidenav">
<p class="nav-section-label">{% trans "Navigation" %}</p>
<a href="#section-intro" class="nav-link active"><i class="fas fa-info-circle"></i> {% trans "Présentation" %}</a>
<a href="#section-cmd" class="nav-link"> <i class="fas fa-gamepad"></i> {% trans "Commandes" %}</a>
<a href="#section-start" class="nav-link nav-sub"><i class="fas fa-play"></i> {% trans "Lancer le balayage" %}</a>
<a href="#section-stop" class="nav-link nav-sub"><i class="fas fa-stop"></i> {% trans "Arrêt" %}</a>
<a href="#section-recover" class="nav-link"> <i class="fas fa-undo-alt"></i> {% trans "Procédure après arrêt" %}</a>
<a href="#section-reduct" class="nav-link nav-sub"><i class="fas fa-database"></i> ReductStore</a>
</nav>
<!-- ─── Contenu principal ─── -->
<main class="doc-content">
<!-- ============================================================ -->
<!-- SECTION 1 : Présentation -->
<!-- ============================================================ -->
<section class="doc-section" id="section-intro">
<div class="section-header">
<span class="section-badge badge-indigo">{% trans "Balayage" %}</span>
<h2><i class="fas fa-route"></i> {% trans "Balayage des puits" %}</h2>
</div>
<div class="info-row">
<div class="info-card card-accent-indigo">
<div class="card-icon"><i class="fas fa-crop-alt"></i></div>
<div class="card-body">
<h4>{% trans "Recadrage forcé" %}</h4>
<p>{% trans "Le balayage force toujours le recadrage de l'image." %}</p>
<p>{% trans "Le balayage est disponible quand la session est marquée ACTIVE" %}</p>
<div class="alert-box alert-info">
<i class="fas fa-info-circle"></i>
{% trans "Les boutons Axes et Recadrer sont affichés à titre indicatif uniquement." %}
</div>
</div>
</div>
</div>
</section>
<!-- ============================================================ -->
<!-- SECTION 2 : Commandes -->
<!-- ============================================================ -->
<section class="doc-section" id="section-cmd">
<div class="section-header">
<span class="section-badge badge-blue">{% trans "Interface" %}</span>
<h2><i class="fas fa-gamepad"></i> {% trans "Commandes importantes" %}</h2>
</div>
<!-- Lancer le balayage -->
<div class="sub-subsection" id="section-start">
<h4 class="table-title">
<i class="fas fa-play"></i> {% trans "Lancer le balayage" %}
</h4>
<div class="info-row">
<div class="info-card card-accent-green full-width">
<div class="card-icon"><i class="fas fa-play-circle"></i></div>
<div class="card-body">
<ul class="doc-list">
<li>
<i class="fas fa-shoe-prints text-green"></i>
{% trans "Suivi pas à pas de tous les puits de la session." %}
</li>
<li>
<i class="fas fa-terminal text-green"></i>
{% trans "Les logs s'affichent en bas de l'écran en temps réel." %}
</li>
</ul>
</div>
</div>
</div>
</div>
<!-- ARRÊT -->
<div class="sub-subsection" id="section-stop">
<h4 class="table-title">
<i class="fas fa-stop"></i> {% trans "ARRÊT" %}
<span class="badge-important">{% trans "ATTENTION" %}</span>
</h4>
<div class="info-row">
<div class="info-card card-accent-green">
<div class="card-icon"><i class="fas fa-images"></i></div>
<div class="card-body">
<h4><i class="fas fa-check-circle text-green"></i> {% trans "Images" %}</h4>
<p>{% trans "Les images capturées jusqu'à l'arrêt seront enregistrées." %}</p>
</div>
</div>
<div class="info-card card-accent-red">
<div class="card-icon"><i class="fas fa-chart-line"></i></div>
<div class="card-body">
<h4><i class="fas fa-times-circle text-red"></i> {% trans "Données" %}</h4>
<p>{% trans "Les données de suivi ne seront pas enregistrées." %}</p>
</div>
</div>
</div>
</div>
</section>
<!-- ============================================================ -->
<!-- SECTION 3 : Procédure après arrêt -->
<!-- ============================================================ -->
<section class="doc-section" id="section-recover">
<div class="section-header">
<span class="section-badge badge-red">{% trans "Récupération" %}</span>
<h2><i class="fas fa-undo-alt"></i> {% trans "Procédure en cas d'arrêt" %}</h2>
</div>
<!-- Étapes Django -->
<div class="info-row">
<div class="info-card card-accent-orange full-width">
<div class="card-icon"><i class="fas fa-redo-alt"></i></div>
<div class="card-body">
<h4>{% trans "Réinitialiser la session" %}</h4>
<ol class="doc-steps">
<li>
<i class="fas fa-trash-alt text-red"></i>
{% trans "Supprimer la session en cours depuis l'administration Django." %}
</li>
<li>
<i class="fas fa-plus-circle text-green"></i>
{% trans "Créer une nouvelle session." %}
</li>
</ol>
</div>
</div>
</div>
<!-- ReductStore — superadmin -->
<div class="sub-subsection" id="section-reduct">
<h4 class="table-title">
<i class="fas fa-database"></i>
{% trans "Nettoyage ReductStore" %}
<span class="badge-superadmin">superadmin</span>
</h4>
<div class="info-row">
<div class="info-card card-accent-red full-width">
<div class="card-icon"><i class="fas fa-exclamation-triangle"></i></div>
<div class="card-body">
<h4>{% trans "Accès ReductStore" %}</h4>
<a href="http://192.168.1.200:8383/ui/dashboard" target="_blank" class="access-link">
192.168.1.200:8383/ui/dashboard <i class="fas fa-external-link-alt"></i>
</a>
</div>
</div>
</div>
<div class="info-row">
<!-- Bucket camera -->
<div class="info-card card-accent-cyan">
<div class="card-icon"><i class="fas fa-images"></i></div>
<div class="card-body">
<h4>
{% trans "Bucket" %} <code>camera</code>
</h4>
<ol class="doc-steps">
<li>
<i class="fas fa-search"></i>
{% trans "Localiser les entrées correspondant aux UUIDs des expériences." %}
</li>
<li>
<i class="fas fa-trash-alt text-red"></i>
{% trans "Supprimer les UUIDs des expériences concernées." %}
</li>
</ol>
</div>
</div>
<!-- Bucket planarian_metrics -->
<div class="info-card card-accent-green">
<div class="card-icon"><i class="fas fa-chart-line"></i></div>
<div class="card-body">
<h4>
{% trans "Bucket" %} <code>planarian_metrics</code>
</h4>
<ol class="doc-steps">
<li>
<i class="fas fa-tag"></i>
{% trans "Repérer les enregistrements dont le label correspond aux UUIDs." %}
</li>
<li>
<i class="fas fa-trash-alt text-red"></i>
{% trans "Supprimer ces enregistrements." %}
</li>
</ol>
<div class="tag-list" style="margin-top:10px;">
<span class="tag tag-gray">label: uuid</span>
</div>
</div>
</div>
</div>
<!-- Résumé visuel uuid -->
<div class="info-row">
<div class="info-card card-accent-yellow full-width">
<div class="card-icon"><i class="fas fa-key"></i></div>
<div class="card-body">
<h4>{% trans "Identifier les UUIDs à supprimer" %}</h4>
<p>{% trans "Les UUIDs des expériences sont visibles dans l'administration Django, dans la session supprimée ou dans les logs affichés pendant le balayage." %}</p>
<div class="uuid-example">
<i class="fas fa-fingerprint"></i>
<code>3-HD-A4</code>
</div>
</div>
</div>
</div>
</div>
</section>
</main>
</div>
{% endblock %}
{% block js_footer %}
{{ block.super }}
<script>
/* Mise en évidence du lien actif dans la navigation latérale */
(function () {
const links = document.querySelectorAll('.nav-link');
const sections = document.querySelectorAll('[id^="section-"]');
const observer = new IntersectionObserver(
(entries) => {
entries.forEach(entry => {
if (entry.isIntersecting) {
links.forEach(l => l.classList.remove('active'));
const target = document.querySelector(`.nav-link[href="#${entry.target.id}"]`);
if (target) target.classList.add('active');
}
});
},
{ rootMargin: '-10% 0px -80% 0px' }
);
sections.forEach(s => observer.observe(s));
})();
</script>
{% endblock %}
@@ -2,12 +2,14 @@
{% if messages %}
<div class="alert">
{% for message in messages %}
<div class="w3-bar {% if message.tags %}{{ message.tags }}{% endif %}" style="width: 100%" >
<div class="w3-panel w3-round
{% if message.tags == 'success' %}w3-green
{% elif message.tags == 'error' %}w3-red
{% elif message.tags == 'warning' %}w3-orange
{% else %}w3-blue{% endif %}" style="width: 100%" >
<div class="w3-bar-item">{{ message }}</div>
<div class="w3-bar-item w3-button w3-right" onclick="this.parentElement.style.display='none'">&times;</div>
</div>
{% endfor %}
</div>
{% endif %}
+1
View File
@@ -38,6 +38,7 @@ urlpatterns += i18n_patterns(
path('', RedirectView.as_view(url='/scanner/calibration/', permanent=True), name='redirect_to_mainboard'),
path('scanner/', include('scanner.urls', namespace='scanner')),
path('planarian/', include('planarian.urls', namespace='planarian')),
)
if settings.DEBUG:
+102
View File
@@ -0,0 +1,102 @@
#!/bin/bash
# Génère 24 vidéos pour simuler le balayage d'un multi-puit de 6x24
# A1..A6, B1..B6, C1..C6, D1..D6
#
MODE="$1"
PATH="./media/simulation"
default_width=1000 # px
default_height=1000 # px
default_diameter=16.0 # mm
#fps duration bg-color arena-color arena-border shadow-color body-color body-dark body-light head-color thresh-immobile thresh-mobile
BASE="15 60 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5"
#photo-mode photo-strength photo-x photo-y photo-sine-freq photo-radius
PHOTO_0="none 0.50 0.50 0.50 0.10 0.30"
PHOTO_1="fixed 0.50 0.50 0.50 0.10 0.40"
PHOTO_2="sine 0.50 0.50 0.50 0.10 0.50"
PHOTO_3="radial 0.50 0.50 0.50 0.10 0.60"
#chemo-strength chemo-x chemo-y chemo-radius
CHEMO_0="0.0 0.70 0.70 2.0"
CHEMO_1="0.5 0.70 0.70 2.0"
CHEMO_2="1.0 0.70 0.70 2.0"
#avoid-strength avoid-radius aggreg-strength aggreg-radius chem-repulsion chem-decay
AVOID_0="0.0 3.0 0.0 6.0 0.0 0.95"
AVOID_1="0.5 3.0 0.0 6.0 0.5 0.75"
AVOID_2="1.0 3.0 0.0 6.0 1.0 0.65"
#length width
SIZE_0="0.40 0.30"
SIZE_1="0.45 0.35"
SIZE_2="0.50 0.40"
SIZE_3="0.55 0.45"
SIZE_4="0.65 0.45"
SIZE_5="0.7 0.25"
declare -A DEFAULT
declare -A ALL
#=========================== count size seed base thigmotaxis photo chemo avoid
DEFAULT[default_simulation]="4 $SIZE_0 32 $BASE 0.45 $PHOTO_0 $CHEMO_0 $AVOID_1"
#======= count size seed base thigmotaxis photo chemo avoid
ALL[A1]="4 $SIZE_0 32 $BASE 0.45 $PHOTO_0 $CHEMO_0 $AVOID_0"
ALL[A2]="4 $SIZE_1 64 $BASE 0.50 $PHOTO_1 $CHEMO_1 $AVOID_1"
ALL[A3]="4 $SIZE_2 96 $BASE 0.55 $PHOTO_1 $CHEMO_2 $AVOID_2"
ALL[A4]="4 $SIZE_3 128 $BASE 0.60 $PHOTO_2 $CHEMO_0 $AVOID_1"
ALL[A5]="4 $SIZE_4 192 $BASE 0.65 $PHOTO_2 $CHEMO_1 $AVOID_0"
ALL[A6]="4 $SIZE_5 240 $BASE 0.75 $PHOTO_3 $CHEMO_2 $AVOID_2"
ALL[B1]="4 $SIZE_0 32 $BASE 0.45 $PHOTO_3 $CHEMO_0 $AVOID_0"
ALL[B2]="4 $SIZE_1 64 $BASE 0.50 $PHOTO_0 $CHEMO_1 $AVOID_1"
ALL[B3]="4 $SIZE_2 96 $BASE 0.55 $PHOTO_0 $CHEMO_2 $AVOID_0"
ALL[B4]="4 $SIZE_3 128 $BASE 0.65 $PHOTO_0 $CHEMO_1 $AVOID_2"
ALL[B5]="4 $SIZE_4 192 $BASE 0.85 $PHOTO_0 $CHEMO_2 $AVOID_0"
ALL[B6]="4 $SIZE_5 240 $BASE 0.95 $PHOTO_0 $CHEMO_0 $AVOID_0"
ALL[C1]="4 $SIZE_0 32 $BASE 0.40 $PHOTO_0 $CHEMO_0 $AVOID_1"
ALL[C2]="4 $SIZE_1 64 $BASE 0.30 $PHOTO_0 $CHEMO_0 $AVOID_0"
ALL[C3]="4 $SIZE_2 96 $BASE 0.55 $PHOTO_0 $CHEMO_1 $AVOID_0"
ALL[C4]="4 $SIZE_3 128 $BASE 0.45 $PHOTO_0 $CHEMO_2 $AVOID_2"
ALL[C5]="4 $SIZE_4 192 $BASE 0.50 $PHOTO_0 $CHEMO_0 $AVOID_0"
ALL[C6]="4 $SIZE_5 240 $BASE 0.65 $PHOTO_0 $CHEMO_1 $AVOID_0"
ALL[D1]="4 $SIZE_0 32 $BASE 0.70 $PHOTO_0 $CHEMO_2 $AVOID_1"
ALL[D2]="4 $SIZE_1 64 $BASE 0.65 $PHOTO_0 $CHEMO_0 $AVOID_0"
ALL[D3]="4 $SIZE_2 96 $BASE 0.75 $PHOTO_0 $CHEMO_1 $AVOID_2"
ALL[D4]="4 $SIZE_3 128 $BASE 0.85 $PHOTO_0 $CHEMO_0 $AVOID_0"
ALL[D5]="4 $SIZE_4 192 $BASE 0.65 $PHOTO_0 $CHEMO_2 $AVOID_0"
ALL[D6]="4 $SIZE_5 240 $BASE 0.45 $PHOTO_0 $CHEMO_0 $AVOID_0"
export_video() {
local -n arguments=$1
for key in "${!arguments[@]}"; do
args="${arguments[$key]}"
read -r count length width seed fps duration bg_color arena_color arena_border shadow_color \
body_color body_dark body_light head_color thresh_immobile thresh_mobile thigmotaxis \
photo_mode photo_strength photo_x photo_y photo_sine_freq photo_radius chemo_strength chemo_x chemo_y chemo_radius \
avoid_strength avoid_radius aggreg_strength aggreg_radius chem_repulsion chem_decay <<< "$args"
echo "==== Exécution de $PATH/$key.mp4"
./planarian_sim.py --output "$PATH/$key.mp4" --default_width "$default_width" --default_height "$default_height" --default_diameter "$default_diameter" --no-csv \
--count "$count" --length "$length" --width "$width" --duration "$duration" --fps "$fps" --seed "$seed" \
--bg-color "$bg_color" --arena-color "$arena_color" --arena-border "$arena_border" --shadow-color "$shadow_color" \
--body-color "$body_color" --body-dark "$body_dark" --body-light "$body_light" --head-color "$head_color" \
--thresh-immobile "$thresh_immobile" --thresh-mobile "$thresh_mobile" --thigmotaxis "$thigmotaxis" \
--photo-mode "$photo_mode" --photo-strength "$photo_strength" --photo-x "$photo_x" --photo-y "$photo_y" --photo-sine-freq "$photo_sine_freq" --photo-radius "$photo_radius" \
--chemo-strength "$chemo_strength" --chemo-x "$chemo_x" --chemo-y "$chemo_y" --chemo-radius "$chemo_radius" \
--avoid-strength "$avoid_strength" --avoid-radius "$avoid_radius" --aggreg-strength "$aggreg_strength" --aggreg-radius "$aggreg_radius" \
--chem-repulsion "$chem_repulsion" --chem-decay "$chem_decay"
done
}
if [ "$MODE" = "all" ]; then
export_video ALL
else
export_video DEFAULT
fi
+93 -23
View File
@@ -21,11 +21,14 @@ import logging
from datetime import datetime, timezone
from pathlib import Path
from typing import Optional, Callable, TYPE_CHECKING
from asgiref.sync import async_to_sync
from django.conf import settings
from modules.planarian_tracker import PlanarianTracker
from modules.planarian_metrics import ExperimentParams
from modules.tube_aligner import TubeAligner
if TYPE_CHECKING:
from .circular_crop import CircularCrop # Evite l'import circulaire au runtime
@@ -49,16 +52,27 @@ class VideoCaptureInterface(abc.ABC):
# Cadence par défaut en images par seconde
DEFAULT_FPS: float = 5.0
def __init__(self, fps: float = DEFAULT_FPS, use_tracking: bool = False, display=None, parent=None):
DEFAULT_TRACKER_CONFIG = dict(
tube_axis = settings.TRACKER_TUBE_AXIS,
min_area_px = settings.TRACKER_MIN_AREA,
max_area_ratio = settings.TRACKER_MAX_AREA_RATIO,
max_planarians = settings.TRACKER_MAX_PLANARIANS,
merge_kernel_size = settings.TRACKER_MERGE_KERNEL_SIZE,
min_contour_dist_px = settings.TRACKER_MIN_CONTOUR_DIST_PX,
)
def __init__(self, fps: float = DEFAULT_FPS, use_tracking: bool = False, display=None, parent=None, jpeg_quality=85):
"""
Initialise l'interface de capture.
:param fps: Cadence cible en images par seconde
"""
self._fps: float = fps
self.use_tracking = use_tracking
self.display = display
self.parent = parent
self.use_tracking = use_tracking
self.jpeg_quality = jpeg_quality
self._interval: float = 1.0 / fps # Intervalle en secondes entre chaque capture
self._running: bool = False # Indique si la capture est en cours
self._thread: Optional[threading.Thread] = None
@@ -69,10 +83,14 @@ class VideoCaptureInterface(abc.ABC):
self._active_crop = False
self._error_occured = False
self._tracker = PlanarianTracker(
tube_axis = settings.TRACKER_TUBE_AXIS,
min_area_px = settings.TRACKER_MIN_AREA,
)
self._tracker = None
self._metrics = None
self._params = None
self._clientDB = self.parent.metricDB
# Tracker générique, pour simulation
self.on_test_well_change(**self.DEFAULT_TRACKER_CONFIG)
self._aligner = TubeAligner(
grbl_threshold_px = 20, # au-delà → correction GRBL
dead_zone_px = 5, # en-dessous → rien à faire
@@ -80,13 +98,66 @@ class VideoCaptureInterface(abc.ABC):
)
self.align_detection = None # résultat du test
def on_well_change(self):
"""
Appelé par le CNC lors du changement de puits.
Réinitialise le fond appris et l'état inter-frame du tracker.
"""
self._tracker.reset()
def on_test_well_change(self, **cfg):
try:
if self.use_tracking and cfg:
self._tracker = PlanarianTracker(**cfg)
logger.info(f"Create test with conf: {cfg}")
except Exception as e:
logger.error(f"Error creating tracker with conf {cfg}: {e}")
self._tracker = None
def _flush_current_well(self, uuid=""):
"""Stocke les résumés du puits courant — appelé avant tout changement."""
if not self._metrics or not self._params:
return
for pid, m in enumerate(self._metrics):
async_to_sync(self._clientDB.store_summary)(
summary = m.summary(),
experiment = self._params.experiment,
well = self._params.well,
planarian = pid,
uuid = uuid,
)
logger.warning(f'_flush_current_well: {self._params.well} planaire: {pid}')
self._metrics.clear()
def on_well_change(self, cfg, uuid="", draw_contours=False):
"""
Appelé par la CNC lors du changement de puits.
Réinitialise le fond appris et l'état inter-frame du tracker.
Construit les métriques aussi
"""
if not self.use_tracking or not cfg:
return
# 1. Sauvegarder les résumés du puits qu'on quitte
self._flush_current_well(uuid) # ← ferme le puits courant
# 2. Reconstruire pour le nouveau puit _metrics_list
params = cfg.to_params_dict()
self._params = ExperimentParams(params)
self._metrics = [self._params.build_metrics() for _ in range(self._params.planarian_count)]
self._tracker = PlanarianTracker(
tube_axis = self._params.tube_axis,
min_area_px = self._params.min_area_px,
max_area_ratio = self._params.max_area_ratio,
max_planarians = self._params.planarian_count,
merge_kernel_size = self._params.merge_kernel_size,
min_contour_dist_px = self._params.min_contour_dist_px,
draw_contours = draw_contours,
)
def on_scan_complete(self):
if self.use_tracking:
self._flush_current_well() # ← ferme le dernier puits
def set_draw_contours(self, draw: bool = True):
if self._tracker:
self._tracker.draw_contours = draw
# ------------------------------------------------------------------
# Méthodes abstraites — obligatoires dans les sous-classes
@@ -227,30 +298,33 @@ class VideoCaptureInterface(abc.ABC):
:return: Image traitée (JPEG ou PNG selon la stratégie)
"""
metrics = {"detected": False}
if self._circular_crop is not None:
jpeg = self._circular_crop.process(jpeg_bytes)
nparr = np.frombuffer(jpeg, np.uint8)
frame = cv2.imdecode(nparr, cv2.IMREAD_COLOR)
if frame is None:
return jpeg, metrics
try:
# Mode debug
if self._aligner.debug:
self.align_detection = self._aligner.detect_tube(frame)
annotated = self.align_detection.get('frame_annotated')
frame = annotated if annotated is not None else frame
# mode racking
##
# mode tracking
if self.use_tracking:
ts = datetime.now(timezone.utc).timestamp()
frame, metrics = self._tracker.process(frame, ts)
ok, buf = cv2.imencode(".jpg", frame, [cv2.IMWRITE_JPEG_QUALITY, 85])
##
ok, buf = cv2.imencode(".jpg", frame, [cv2.IMWRITE_JPEG_QUALITY, self.jpeg_quality])
if ok:
jpeg = buf.tobytes()
return jpeg, metrics
except Exception as e:
logger.error(e)
return jpeg_bytes, metrics
def save_frame(self, jpeg_bytes: bytes, directory: str = ".", prefix: str = "frame") -> Path:
@@ -325,16 +399,12 @@ class VideoCaptureInterface(abc.ABC):
##
jpeg, metrics = self.process_frame(jpeg) # Recadrage circulaire si configuré
metrics.update({
"count": self._frame_count,
})
self._frame_count += 1
ts = datetime.now(timezone.utc)
if self._on_frame:
try:
self._on_frame(jpeg, ts, metrics)
self._on_frame(jpeg, ts, metrics, self._frame_count)
except Exception as cb_err: # noqa: BLE001
logger.error("Erreur dans le callback image : %s", cb_err)
+294
View File
@@ -0,0 +1,294 @@
'''
Simulateur GCode pour tester sans CNC physique.
GRBLController (simulé):
Reproduit fidèlement l'API de grbl.py
Simule les mouvements (X, Y) avec délai proportionnel au feed rate
Le mode absolu est retenu
Aucune dépendance à pyserial
Created on 07 mai 2026
@author: denis@miraceti.net
'''
import logging
import time
import threading
import math
logging.basicConfig(level=logging.INFO)
logger = logging.getLogger(__name__)
class GRBLController:
'''
Simulateur du contrôleur GRBL 1.1f (L2544 Laser Engraving Machine).
API 100% identique à grbl.py — interchangeable sans modifier le code appelant.
Les délais de déplacement sont calculés à partir du feed rate et de la distance.
'''
X_MAX = 350
Y_MAX = 250
X_MIN = 0
Y_MIN = 0
# Facteur de compression du temps simulé (1.0 = temps réel, 0.1 = 10x plus rapide)
TIME_SCALE = 0.1
def __init__(self, port='/dev/ttyUSB0', baudrate=115200, timeout=1, send_callback=None, x_max=None, y_max=None):
logger.info(f"GRBLController SIMULATOR::init begin {port} device port")
self.port = port
self.baudrate = baudrate
self.timeout = timeout
if x_max is not None:
self.X_MAX = x_max
if y_max is not None:
self.Y_MAX = y_max
self._state = send_callback
if self._state is None:
self._state = self._send_msg
# Position courante simulée
self.x, self.y = 0.0, 0.0
# État interne de la machine simulée
self._machine_state = 'Idle' # Idle | Run | Alarm
self._connected = False
# -------------------------------------------------------------------------
# Méthodes utilitaires
# -------------------------------------------------------------------------
def wait_for(self, delay=1.0):
# Applique le facteur de compression temporelle
threading.Event().wait(delay * self.TIME_SCALE)
def _send_msg(self, **msg):
# Callback par défaut : simple affichage console
print(msg)
# -------------------------------------------------------------------------
# Simulation de la couche série (pas de port réel)
# -------------------------------------------------------------------------
def clear_buffer(self):
# Rien à vider : pas de port série physique
logger.debug("SIMULATOR::clear_buffer (no-op)")
def start_connection(self):
'''Simule l'ouverture de la connexion série et l'initialisation GRBL.'''
logger.info(f"SIMULATOR::start_connection on {self.port} @ {self.baudrate} baud")
self._state(state='serial', msg="Grbl 1.1f ['$' for help]")
self._connected = True
self._wake_up()
self._init_machine()
logger.info("SIMULATOR::start_connection started")
def _init_machine(self):
# Envoie les commandes d'initialisation (simulées)
self.send("G21") # Unités en mm
self.send("G90") # Mode absolu
def _clamp(self, x, y):
self.clear_buffer()
x = max(self.X_MIN, min(self.X_MAX, x))
y = max(self.Y_MIN, min(self.Y_MAX, y))
return x, y
def _wake_up(self):
# Simule l'envoi des octets de réveil et la réponse GRBL
logger.debug("SIMULATOR::_wake_up")
self.wait_for(1)
self._state(state='serial', msg="") # ligne vide typique de GRBL au démarrage
self.clear_buffer()
# -------------------------------------------------------------------------
# Envoi de commandes
# -------------------------------------------------------------------------
def send(self, cmd, wait_ok=True, timeout=5):
try:
return self._send(cmd, wait_ok, timeout)
except Exception as e:
self._state(state='error', msg=f"Error send {cmd} command: {e}")
self.close()
self.start_connection()
def recover(self):
self._state(state='recover', msg="Erreur, récupération de GRBL...")
self.wait_for(1)
self._wake_up()
def _send(self, cmd, wait_ok=True, timeout=5):
'''Simule l'envoi d'une commande GCode et retourne "ok".'''
self._state(state='send', msg=f">>> {cmd}")
logger.debug(f"SIMULATOR::_send {cmd}")
# Interprète les commandes de mouvement pour mettre à jour la position interne
self._interpret_gcode(cmd)
if not wait_ok:
return None
# Simule une réponse "ok" immédiate
return "ok"
def _interpret_gcode(self, cmd):
'''
Analyse le GCode pour mettre à jour x, y et simuler le délai de déplacement.
Gère : G0, G1, G53 G1, G92, G21, G90, G91, $X, $H.
'''
cmd_upper = cmd.strip().upper()
# --- Commandes sans mouvement ---
if cmd_upper in ("G21", "G90", "G91", "$X"):
return
if cmd_upper == "$H":
# Homing : retour à l'origine avec délai simulé
self._machine_state = 'Run'
self._state(state='send', msg="SIMULATOR: homing...")
distance = math.hypot(self.x, self.y)
self._simulate_move_delay(distance, feed=3000)
self.x, self.y = 0.0, 0.0
self._machine_state = 'Idle'
return
# --- Extraction des coordonnées X, Y et du feed F ---
tokens = cmd_upper.replace(',', ' ').split()
new_x, new_y, feed = self.x, self.y, 1000.0
for token in tokens:
if token.startswith('X'):
try:
new_x = float(token[1:])
except ValueError:
pass
elif token.startswith('Y'):
try:
new_y = float(token[1:])
except ValueError:
pass
elif token.startswith('F'):
try:
feed = float(token[1:])
except ValueError:
pass
# --- G92 : redéfinit la position courante sans déplacement ---
if 'G92' in tokens:
self.x = new_x
self.y = new_y
logger.debug(f"SIMULATOR: G92 position set to ({self.x:.2f}, {self.y:.2f})")
return
# --- Mouvement effectif (G0, G1, G53 G1, etc.) ---
has_move = any(t in tokens for t in ('G0', 'G1', 'G53'))
if has_move and (new_x != self.x or new_y != self.y):
distance = math.hypot(new_x - self.x, new_y - self.y)
self._machine_state = 'Run'
self._simulate_move_delay(distance, feed)
self.x = new_x
self.y = new_y
self._machine_state = 'Idle'
logger.debug(f"SIMULATOR: moved to ({self.x:.2f}, {self.y:.2f})")
def _simulate_move_delay(self, distance_mm, feed):
'''Simule le temps de déplacement : distance / feed (mm/min) → secondes.'''
if feed <= 0:
return
duration = (distance_mm / feed) * 60.0 # feed est en mm/min
self.wait_for(duration)
# -------------------------------------------------------------------------
# Status machine
# -------------------------------------------------------------------------
def get_status(self):
'''Retourne un status GRBL simulé au format <State|MPos:x,y,z>.'''
status = f"<{self._machine_state}|MPos:{self.x:.3f},{self.y:.3f},0.000|FS:0,0>"
logger.debug(f"SIMULATOR::get_status → {status}")
return status
def reset_grbl(self):
self.send("$X") # Réinitialise les alarmes
self.wait_idle()
self.send("$H") # Homing
self.wait_idle()
def _mpos(self, status):
if "MPos" in status:
mpos = status.split("MPos:")[1].split("|")[0]
x, y, *_ = mpos.split(",")
self._state(state='Mpos', msg=f"pos >>> ({x}, {y})")
return float(x), float(y)
return None, None
def get_mpos(self):
return self._mpos(self.get_status())
def wait_idle(self, timeout=20):
'''Attend que la machine soit à l'état Idle (immédiat en simulation).'''
start = time.time()
while True:
if time.time() - start > timeout:
raise TimeoutError("Délai d'attente pour Idle dépassé")
status = self.get_status()
self.x, self.y = self._mpos(status)
self._state(xy=True, x=self.x, y=self.y)
if status and "Idle" in status:
break
self.wait_for(0.1)
# -------------------------------------------------------------------------
# Commandes de haut niveau (identiques à grbl.py)
# -------------------------------------------------------------------------
def send_command(self, cmd):
self.send(cmd)
self.wait_idle()
def move_to(self, x, y, feed=1000):
x, y = self._clamp(x, y)
cmd = f"G53 G1 X{x:.2f} Y{y:.2f} F{feed}"
self.send_command(cmd)
def move_relative(self, dx=0, dy=0, feed=1000):
x, y = self.get_mpos() # Position actuelle
self.move_to(x + dx, y + dy, feed=feed)
def move_relative__(self, dx=0, dy=0, feed=1000):
self.send("G91") # Mode relatif
cmd = f"G0 X{dx} Y{dy} F{feed}"
self.send(cmd)
self.send("G90") # Retour en mode absolu
self.wait_idle()
def go_origin(self, feed=1000):
self.move_to(0, 0, feed=feed)
self.wait_for(2.0)
def set_position(self, x, y):
x, y = self._clamp(x, y)
cmd = f"G92 X{x:.2f} Y{y:.2f}"
self.send(cmd)
self.wait_for(2.0)
def move_up(self, step=10, feed=1000):
self.move_relative(dy=step, feed=feed)
def move_down(self, step=10, feed=1000):
self.move_relative(dy=-step, feed=feed)
def move_left(self, step=10, feed=1000):
self.move_relative(dx=-step, feed=feed)
def move_right(self, step=10, feed=1000):
self.move_relative(dx=step, feed=feed)
def close(self):
# Simule la fermeture du port série
self._connected = False
logger.info("SIMULATOR::close — connexion simulée fermée")
@@ -59,7 +59,7 @@ class PiCamera2Capture(VideoCaptureInterface):
:param use_video_config: True = VideoConfiguration (flux continu, basse latence)
False = StillConfiguration (haute résolution, plus lent)
"""
super().__init__(fps=fps, use_tracking=use_tracking, display=display, parent=parent)
super().__init__(fps=fps, use_tracking=use_tracking, display=display, parent=parent, jpeg_quality=jpeg_quality)
self._width: int = width
self._height: int = height
self._jpeg_quality: int = jpeg_quality
File diff suppressed because it is too large Load Diff
+506 -205
View File
@@ -1,36 +1,221 @@
# modules/planarian_tracker.py
'''
Created on 16 avr. 2026
"""
modules/planarian_tracker.py
Détection et suivi multi-individus de planaires dans un tube.
Supporte de 1 à MAX_PLANARIANS planaires par tube.
Stratégie :
- Soustraction de fond MOG2 (léger sur Raspberry Pi 4)
- Détection de tous les contours valides (surface >= min_area_px)
- Association frame-à-frame par distance euclidienne minimale
via algorithme hongrois (scipy.optimize.linear_sum_assignment)
- Un état inter-frame indépendant par individu (PlanarianState)
- Retourne une liste de résultats, un par individu suivi
Created on 25 avr. 2026
@author: denis
'''
"""
import cv2
import logging
import numpy as np
from scipy.optimize import linear_sum_assignment
import logging
logger = logging.getLogger(__name__)
# Nombre maximum de planaires suivis simultanément par tube
MAX_PLANARIANS = 10
# Distance maximale en pixels entre deux positions consécutives
# pour qu'une association soit acceptée (évite les sauts aberrants)
MAX_ASSOC_DIST_PX = 80
# Couleurs d'annotation par individu (BGR)
# Cycle automatique si plus de planaires que de couleurs
INDIVIDUAL_COLORS = [
(255, 255, 0), # cyan
( 0, 165, 255), # orange
(255, 0, 255), # magenta
( 0, 255, 255), # jaune
(128, 0, 255), # violet
( 0, 255, 128), # vert clair
(255, 128, 0), # bleu clair
( 0, 128, 255), # orange foncé
(128, 255, 0), # vert-jaune
(255, 0, 128), # rose
]
# Couleur du contour principal (individu le plus grand)
COLOR_LARGEST = (255, 255, 0) # cyan
COLOR_OTHER = ( 0, 255, 0) # vert
COLOR_CENTER = ( 0, 0, 255) # rouge
# ---------------------------------------------------------------------------
# État inter-frame d'un individu
# ---------------------------------------------------------------------------
class PlanarianState:
"""
Mémorise la position et le timestamp de la dernière détection
pour un planaire individuel.
Un PlanarianState par slot (index 0 à max_planarians-1).
Quand un slot n'est pas associé à un contour sur plusieurs frames
consécutives, il est marqué comme perdu (lost).
"""
# Nombre de frames sans détection avant de considérer l'individu perdu
MAX_LOST_FRAMES = 5
def __init__(self, idx: int):
"""
Args:
idx : index de l'individu (0-based)
"""
self.idx = idx
self.cx = None
self.cy = None
self.ts = None
self.lost = 0 # compteur de frames sans détection
self.active = False # vrai si l'individu a été détecté au moins une fois
def update(self, cx: int, cy: int, ts: float):
"""
Met à jour la position suite à une association réussie.
Args:
cx, cy : position du centre de masse en pixels
ts : timestamp de la frame
"""
self.cx = cx
self.cy = cy
self.ts = ts
self.lost = 0
self.active = True
def mark_lost(self):
"""Incrémente le compteur de perte — appelé quand aucun contour n'est associé."""
self.lost += 1
@property
def is_lost(self) -> bool:
"""Retourne True si l'individu est considéré perdu (trop de frames sans détection)."""
return self.lost >= self.MAX_LOST_FRAMES
def compute_speed(self, cx: int, cy: int, ts: float, tube_axis: str) -> tuple:
"""
Calcule la vitesse instantanée depuis la position précédente.
Args:
cx, cy : position courante en pixels
ts : timestamp courant
tube_axis : "vertical" ou "horizontal"
Returns:
tuple (speed_px_s, axial_speed) ou (0.0, 0.0) si état vide
"""
if self.cx is None or self.ts is None:
return 0.0, 0.0
dt = ts - self.ts
if dt <= 0:
return 0.0, 0.0
dx = cx - self.cx
dy = cy - self.cy
speed_px_s = float(np.sqrt(dx**2 + dy**2) / dt)
axial_speed = float((dy / dt) if tube_axis == "vertical" else (dx / dt))
return speed_px_s, axial_speed
def reset(self):
"""Réinitialise l'état de cet individu."""
self.cx = None
self.cy = None
self.ts = None
self.lost = 0
self.active = False
# ---------------------------------------------------------------------------
# Tracker multi-individus
# ---------------------------------------------------------------------------
class PlanarianTracker:
"""
Détection et suivi d'une planaire dans un tube.
Détection et suivi multi-individus de planaires dans un tube.
Instancié une fois par caméra active, réutilisé frame à frame.
Utilise la soustraction de fond MOG2 — léger sur Raspberry Pi 4.
Association frame-à-frame par algorithme hongrois (distance euclidienne).
Usage :
tracker = PlanarianTracker(tube_axis="vertical", max_planarians=3)
while capturing:
frame_out, results = tracker.process(frame, ts)
# results : liste de dicts, un par individu détecté
for r in results:
metrics.update(r, planarian_id=r["planarian_id"])
"""
def __init__(self, tube_axis: str = "vertical", min_area_px: int = 20):
# Axe du tube : "vertical" (cy) ou "horizontal" (cx)
# Nombre de frames d'initialisation MOG2 ignorées (fond non appris)
WARMUP_FRAMES = 10
def __init__(
self,
tube_axis: str = "vertical",
min_area_px: int = 20,
max_area_ratio: float = 0.10,
max_planarians: int = 1,
merge_kernel_size: int = 15,
min_contour_dist_px:int = 40,
draw_contours: bool = True,
):
"""
Args:
tube_axis : axe principal du tube — "vertical" (cy) ou "horizontal" (cx)
min_area_px : surface minimale d'un contour pour être considéré valide (px²)
max_area_ratio : surface maximale d'un contour en fraction de la frame (défaut 10%)
filtre les faux positifs du fond non encore appris par MOG2
max_planarians : nombre maximum de planaires à suivre simultanément (1-10)
merge_kernel_size : taille du kernel elliptique de fusion des fragments (px).
Régler ≈ largeur du planaire en pixels. Défaut : 15.
min_contour_dist_px : distance min entre deux contours pour les considérer
comme individus distincts. Défaut : 40px.
"""
self.tube_axis = tube_axis
self.min_area_px = min_area_px
self.max_area_ratio = max_area_ratio
self.max_planarians = max(1, min(max_planarians, MAX_PLANARIANS))
self.draw_contours = draw_contours
# Etat inter-frame
self._prev_cx = None
self._prev_cy = None
self._prev_ts = None
# Un état inter-frame par slot individu
self._states = [PlanarianState(i) for i in range(self.max_planarians)]
# Taille du kernel de fusion morphologique (pixels) —
# doit être proche de la largeur du planaire en pixels.
# Trop petit : fragments non fusionnés → IDs multiples.
# Trop grand : deux planaires proches fusionnés en un seul.
self.merge_kernel_size = merge_kernel_size
# Distance minimale en pixels entre deux contours distincts.
# En-dessous : le plus petit est considéré comme fragment du plus grand.
self.min_contour_dist_px = min_contour_dist_px
# Soustracteur de fond adaptatif MOG2
self._bg_sub = cv2.createBackgroundSubtractorMOG2(
self._bg_sub = self._make_bg_sub()
# Compteur de frames d'initialisation — MOG2 retourne du bruit
# pendant les premières WARMUP_FRAMES frames
self._warmup_count = 0
@staticmethod
def _make_bg_sub():
"""Crée et retourne un soustracteur de fond MOG2."""
return cv2.createBackgroundSubtractorMOG2(
history = 50,
varThreshold = 25,
detectShadows= False,
@@ -38,205 +223,321 @@ class PlanarianTracker:
def reset(self):
"""
Réinitialise l'état inter-frame — appeler lors du changement de puits.
Réinitialise l'état inter-frame complet.
À appeler lors du changement de puits.
"""
self._prev_cx = None
self._prev_cy = None
self._prev_ts = None
# Réinitialise le fond appris
self._bg_sub = cv2.createBackgroundSubtractorMOG2(
history = 50,
varThreshold = 25,
detectShadows= False,
)
'''
def process(self, frame: np.ndarray, ts: float) -> dict:
"""
Analyse une frame décodée numpy.
Retourne un dict de métriques attachable aux labels ReductStore.
:param frame: Frame BGR décodée (numpy array)
:param ts: Timestamp epoch secondes (float)
:return: dict métriques
"""
result = self._empty_result(ts)
gray = cv2.cvtColor(frame, cv2.COLOR_BGR2GRAY)
fg_mask = self._bg_sub.apply(gray)
# Nettoyage morphologique du masque
kernel = np.ones((3, 3), np.uint8)
fg_mask = cv2.morphologyEx(fg_mask, cv2.MORPH_OPEN, kernel)
fg_mask = cv2.morphologyEx(fg_mask, cv2.MORPH_CLOSE, kernel)
contours, _ = cv2.findContours(
fg_mask, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE
)
if not contours:
self._update_prev(None, None, ts)
return result
# Plus grand contour = planaire
largest = max(contours, key=cv2.contourArea)
area = cv2.contourArea(largest)
if area < self.min_area_px:
self._update_prev(None, None, ts)
return result
# Centre de masse
M = cv2.moments(largest)
if M["m00"] == 0:
return result
cx = int(M["m10"] / M["m00"])
cy = int(M["m01"] / M["m00"])
h, w = frame.shape[:2]
# Position normalisée sur l'axe du tube (0.0 → 1.0)
axial_pos = (cy / h) if self.tube_axis == "vertical" else (cx / w)
# Vitesse calculée entre frames
speed_px_s = None
axial_speed = None
if self._prev_cx is not None and self._prev_ts is not None:
dt = ts - self._prev_ts
if dt > 0:
dx = cx - self._prev_cx
dy = cy - self._prev_cy
speed_px_s = float(np.sqrt(dx**2 + dy**2) / dt)
# Vitesse signée sur l'axe du tube
# + = vers bas/droite, - = vers haut/gauche
axial_speed = float((dy / dt) if self.tube_axis == "vertical" else (dx / dt))
result.update({
"detected" : True,
"cx" : cx,
"cy" : cy,
"area_px" : int(area),
"speed_px_s" : round(speed_px_s, 3) if speed_px_s is not None else 0.0,
"axial_speed" : round(axial_speed, 3) if axial_speed is not None else 0.0,
"axial_pos" : round(axial_pos, 4),
})
self._update_prev(cx, cy, ts)
return result
'''
def process(self, frame: np.ndarray, ts: float) -> tuple[np.ndarray, dict]:
"""
Analyse une frame et dessine les contours détectés directement sur l'image.
Retourne (frame_annotée, métriques).
Contours fins Vert (0,255,0) Tous les contours valides détectés
Contour épais Cyan (255,255,0) Planaire principale (plus grand contour)
Croix + cercle Rouge (0,0,255) Centre de masse exact
Texte Blanc Vitesse px/s + position axiale normalisée
"""
result = self._empty_result(ts)
frame_out = frame.copy() # copie pour ne pas modifier l'original
gray = cv2.cvtColor(frame, cv2.COLOR_BGR2GRAY)
fg_mask = self._bg_sub.apply(gray)
kernel = np.ones((3, 3), np.uint8)
fg_mask = cv2.morphologyEx(fg_mask, cv2.MORPH_OPEN, kernel)
fg_mask = cv2.morphologyEx(fg_mask, cv2.MORPH_CLOSE, kernel)
contours, _ = cv2.findContours(
fg_mask, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE
)
if not contours:
self._update_prev(None, None, ts)
return frame_out, result
# Filtre les contours significatifs
valid_contours = [c for c in contours if cv2.contourArea(c) >= self.min_area_px]
if not valid_contours:
self._update_prev(None, None, ts)
return frame_out, result
# Dessine tous les contours valides en vert fin
cv2.drawContours(frame_out, valid_contours, -1, (0, 255, 0), 1)
# Plus grand contour = planaire principale
largest = max(valid_contours, key=cv2.contourArea)
area = cv2.contourArea(largest)
# Contour principal en cyan plus épais
cv2.drawContours(frame_out, [largest], -1, (255, 255, 0), 2)
M = cv2.moments(largest)
if M["m00"] == 0:
return frame_out, result
cx = int(M["m10"] / M["m00"])
cy = int(M["m01"] / M["m00"])
h, w = frame.shape[:2]
axial_pos = (cy / h) if self.tube_axis == "vertical" else (cx / w)
speed_px_s = None
axial_speed = None
if self._prev_cx is not None and self._prev_ts is not None:
dt = ts - self._prev_ts
if dt > 0:
dx = cx - self._prev_cx
dy = cy - self._prev_cy
speed_px_s = float(np.sqrt(dx**2 + dy**2) / dt)
axial_speed = float((dy / dt) if self.tube_axis == "vertical" else (dx / dt))
# Croix sur le centre de masse
cross_size = 8
cv2.line(frame_out, (cx - cross_size, cy), (cx + cross_size, cy), (0, 0, 255), 1)
cv2.line(frame_out, (cx, cy - cross_size), (cx, cy + cross_size), (0, 0, 255), 1)
# Cercle centré sur la planaire
cv2.circle(frame_out, (cx, cy), 12, (0, 0, 255), 1)
# Texte vitesse + position axiale
label = f"v={speed_px_s:.1f}px/s ax={axial_pos:.2f}" if speed_px_s is not None else f"ax={axial_pos:.2f}"
cv2.putText(
frame_out, label,
(max(cx - 60, 0), max(cy - 18, 12)),
cv2.FONT_HERSHEY_SIMPLEX, 0.4, (255, 255, 255), 1, cv2.LINE_AA,
)
result.update({
"detected" : True,
"cx" : cx,
"cy" : cy,
"area_px" : int(area),
"speed_px_s" : round(speed_px_s, 3) if speed_px_s is not None else 0.0,
"axial_speed" : round(axial_speed, 3) if axial_speed is not None else 0.0,
"axial_pos" : round(axial_pos, 4),
})
self._update_prev(cx, cy, ts)
return frame_out, result
for s in self._states:
s.reset()
self._bg_sub = self._make_bg_sub()
self._warmup_count = 0
# Les paramètres morphologiques (merge_kernel_size, min_contour_dist_px)
# sont conservés — ils ne dépendent pas du puits
# ------------------------------------------------------------------ #
def _empty_result(self, ts: float) -> dict:
return {
# Interface principale
# ------------------------------------------------------------------ #
def process(self, frame: np.ndarray, ts: float) -> tuple:
"""
Analyse une frame, associe les contours aux individus connus,
dessine les annotations et retourne les métriques.
Args:
frame : image BGR (numpy array)
ts : timestamp de la frame (float, secondes epoch)
Returns:
tuple (frame_annotée, results)
frame_annotée : copie BGR avec contours, croix et textes
results : liste de dicts — un dict par planaire actif détecté.
Chaque dict contient :
planarian_id int index de l'individu (0-based)
detected bool True si détecté cette frame
cx, cy int centre de masse en pixels
area_px int surface du contour (px²)
speed_px_s float vitesse totale (px/s)
axial_speed float vitesse axiale (px/s)
axial_pos float position axiale normalisée (0-1)
timestamp float ts de la frame
"""
frame_out = frame.copy()
h, w = frame.shape[:2]
# --- Extraction du premier plan ---
gray = cv2.cvtColor(frame, cv2.COLOR_BGR2GRAY)
fg_mask = self._bg_sub.apply(gray)
# --- Morphologie : fusion des fragments du corps ---
# Un planaire ondulant est souvent segmenté en plusieurs contours
# (tête, milieu, queue). La dilatation fusionne les fragments proches
# avant la détection des contours.
# Kernel 3×3 : supprime le bruit fin (OPEN)
# Kernel merge_kernel : fusionne les fragments du corps (CLOSE + DILATE)
noise_kernel = np.ones((3, 3), np.uint8)
merge_kernel = cv2.getStructuringElement(
cv2.MORPH_ELLIPSE, (self.merge_kernel_size, self.merge_kernel_size)
)
fg_mask = cv2.morphologyEx(fg_mask, cv2.MORPH_OPEN, noise_kernel)
fg_mask = cv2.morphologyEx(fg_mask, cv2.MORPH_CLOSE, merge_kernel)
fg_mask = cv2.dilate(fg_mask, merge_kernel, iterations=1)
# Warmup MOG2 : les premières WARMUP_FRAMES frames retournent du bruit
# (fond non encore appris) — on les alimente mais on ne détecte rien
self._warmup_count += 1
if self._warmup_count <= self.WARMUP_FRAMES:
return frame_out, []
contours, _ = cv2.findContours(
fg_mask, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE
)
# Surface maximale admissible : fraction de la frame
# Filtre les faux positifs du fond (contours couvrant toute l'image)
max_area_px = h * w * self.max_area_ratio
# Filtrage : surface min ET surface max, triés par surface décroissante
valid = sorted(
[c for c in contours
if self.min_area_px <= cv2.contourArea(c) <= max_area_px],
key=cv2.contourArea,
reverse=True,
)
# --- Suppression des fragments résiduels trop proches ---
# Si plusieurs contours valides ont leur centre à moins de
# min_contour_dist_px les uns des autres, seul le plus grand est conservé.
# Évite les cas où la fusion morphologique est incomplète.
filtered = []
for c in valid:
M = cv2.moments(c)
if M["m00"] == 0:
continue
cx_c = int(M["m10"] / M["m00"])
cy_c = int(M["m01"] / M["m00"])
too_close = False
for kept in filtered:
Mk = cv2.moments(kept)
if Mk["m00"] == 0:
continue
cx_k = int(Mk["m10"] / Mk["m00"])
cy_k = int(Mk["m01"] / Mk["m00"])
dist = np.sqrt((cx_c - cx_k)**2 + (cy_c - cy_k)**2)
if dist < self.min_contour_dist_px:
too_close = True
break
if not too_close:
filtered.append(c)
# Limiter au nombre maximum de planaires attendus
valid = filtered[:self.max_planarians]
# --- Calcul des centres de masse des contours détectés ---
detections = [] # liste de (cx, cy, area, contour)
for c in valid:
M = cv2.moments(c)
if M["m00"] == 0:
continue
cx = int(M["m10"] / M["m00"])
cy = int(M["m01"] / M["m00"])
area = cv2.contourArea(c)
detections.append((cx, cy, int(area), c))
# --- Association hongroise détections → slots individus ---
assignments = self._hungarian_assign(detections)
# --- Mise à jour des états et construction des résultats ---
results = []
for slot_idx, det_idx in assignments.items():
state = self._states[slot_idx]
if det_idx is None:
# Aucune détection associée à ce slot
state.mark_lost()
if state.active and not state.is_lost:
# L'individu était suivi : on retourne un résultat "perdu"
results.append(self._lost_result(slot_idx, ts))
continue
cx, cy, area, contour = detections[det_idx]
# Calcul de la vitesse depuis la position précédente
speed_px_s, axial_speed = state.compute_speed(cx, cy, ts, self.tube_axis)
axial_pos = (cy / h) if self.tube_axis == "vertical" else (cx / w)
# Mise à jour de l'état
state.update(cx, cy, ts)
if self.draw_contours:
# Annotation visuelle
color = INDIVIDUAL_COLORS[slot_idx % len(INDIVIDUAL_COLORS)]
cv2.drawContours(frame_out, [contour], -1, color, 2)
self._draw_center(frame_out, cx, cy, slot_idx, speed_px_s, axial_pos, color)
results.append({
"planarian_id": slot_idx,
"detected": True,
"cx": cx,
"cy": cy,
"area_px": area,
"speed_px_s": round(speed_px_s, 3),
"axial_speed": round(axial_speed, 3),
"axial_pos": round(axial_pos, 4),
"timestamp": ts,
})
# Marquer les slots non présents dans les assignments comme perdus
assigned_slots = set(assignments.keys())
for state in self._states:
if state.idx not in assigned_slots:
state.mark_lost()
return frame_out, results
# ------------------------------------------------------------------ #
# Association hongroise
# ------------------------------------------------------------------ #
def _hungarian_assign(self, detections: list) -> dict:
"""
Associe les détections courantes aux slots individus connus
via l'algorithme hongrois (coût = distance euclidienne).
Contrainte : une association n'est acceptée que si la distance
est inférieure à MAX_ASSOC_DIST_PX (évite les sauts aberrants).
Args:
detections : liste de (cx, cy, area, contour)
Returns:
dict {slot_idx: det_idx | None}
det_idx = None si aucune détection assignée à ce slot
"""
n_slots = self.max_planarians
n_dets = len(detections)
if n_dets == 0:
# Aucune détection : tous les slots sont "perdus"
return {i: None for i in range(n_slots)}
# Slots actifs (déjà vus au moins une fois et non perdus)
active_slots = [s for s in self._states if s.active and not s.is_lost]
if not active_slots:
# Première frame ou tous perdus : attribution séquentielle simple
assignment = {}
for i in range(n_slots):
assignment[i] = i if i < n_dets else None
return assignment
# --- Construction de la matrice de coût (distance euclidienne) ---
cost = np.full((len(active_slots), n_dets), fill_value=1e6)
for si, state in enumerate(active_slots):
for di, (cx, cy, _, _) in enumerate(detections):
dist = np.sqrt((cx - state.cx)**2 + (cy - state.cy)**2)
cost[si, di] = dist
# --- Algorithme hongrois ---
row_ind, col_ind = linear_sum_assignment(cost)
# Construire le dict d'association
assignment = {i: None for i in range(n_slots)}
assigned_dets = set()
for ri, ci in zip(row_ind, col_ind):
if cost[ri, ci] <= MAX_ASSOC_DIST_PX:
slot_idx = active_slots[ri].idx
assignment[slot_idx] = ci
assigned_dets.add(ci)
# --- Nouvelles détections non assignées → slots inactifs libres ---
free_slots = [s for s in self._states if not s.active or s.is_lost]
new_dets = [di for di in range(n_dets) if di not in assigned_dets]
for state, det_idx in zip(free_slots, new_dets):
assignment[state.idx] = det_idx
return assignment
# ------------------------------------------------------------------ #
# Dessin des annotations
# ------------------------------------------------------------------ #
def _draw_center(
self,
frame: np.ndarray,
cx: int,
cy: int,
idx: int,
speed_px_s: float,
axial_pos: float,
color: tuple,
):
"""
Dessine la croix, le cercle et le label de vitesse/position
pour un individu.
Args:
frame : image à annoter (en place)
cx, cy : centre de masse en pixels
idx : index de l'individu
speed_px_s : vitesse en px/s
axial_pos : position axiale normalisée
color : couleur BGR de l'individu
"""
cross = 8
cv2.line(frame, (cx - cross, cy), (cx + cross, cy), COLOR_CENTER, 1)
cv2.line(frame, (cx, cy - cross), (cx, cy + cross), COLOR_CENTER, 1)
cv2.circle(frame, (cx, cy), 12, color, 1)
# Badge numéro individu
cv2.circle(frame, (cx + 14, cy - 14), 8, color, -1)
cv2.putText(
frame, str(idx),
(cx + 10, cy - 10),
cv2.FONT_HERSHEY_SIMPLEX, 0.35, (0, 0, 0), 1, cv2.LINE_AA,
)
# Texte vitesse + position axiale
label = (
f"#{idx} v={speed_px_s:.1f}px/s ax={axial_pos:.2f}"
if speed_px_s > 0
else f"#{idx} ax={axial_pos:.2f}"
)
cv2.putText(
frame, label,
(max(cx - 60, 0), max(cy - 22, 12)),
cv2.FONT_HERSHEY_SIMPLEX, 0.35, (255, 255, 255), 1, cv2.LINE_AA,
)
# ------------------------------------------------------------------ #
# Résultats vides / perdus
# ------------------------------------------------------------------ #
def _lost_result(self, planarian_id: int, ts: float) -> dict:
"""
Retourne un résultat pour un individu temporairement non détecté.
Args:
planarian_id : index de l'individu
ts : timestamp de la frame courante
Returns:
dict avec detected=False et les dernières coordonnées connues
"""
state = self._states[planarian_id]
return {
"planarian_id": planarian_id,
"detected": False,
"cx" : 0,
"cy" : 0,
"cx": state.cx or 0,
"cy": state.cy or 0,
"area_px": 0,
"speed_px_s": 0.0,
"axial_speed": 0.0,
"axial_pos": 0.0,
"timestamp": ts,
}
def _update_prev(self, cx, cy, ts):
self._prev_cx = cx
self._prev_cy = cy
self._prev_ts = ts
+1 -1
View File
@@ -27,8 +27,8 @@ class ReductStoreBase(ABC):
self.bucket: Bucket = asyncio.run(self.create_bucket())
logger.info(f"==== {url} token:{api_token}")
async def create_bucket(self):
settings = BucketSettings(
quota_type=self.quota_type,
quota_size=self.quota_size,
+3 -14
View File
@@ -38,7 +38,6 @@ class VideoFileCapture(VideoCaptureInterface):
jpeg_quality: int = 85,
width: Optional[int] = None,
height: Optional[int] = None,
video_lists = [],
use_tracking: bool = False,
display = None,
parent = None,
@@ -50,33 +49,23 @@ class VideoFileCapture(VideoCaptureInterface):
:param width: Largeur souhaitée (None = valeur par défaut du pilote)
:param height: Hauteur souhaitée (None = valeur par défaut du pilote)
"""
super().__init__(fps=fps, use_tracking=use_tracking, display=display, parent=parent)
super().__init__(fps=fps, use_tracking=use_tracking, display=display, parent=parent, jpeg_quality=jpeg_quality)
self._video_file: str = video_file
self._jpeg_quality: int = jpeg_quality
self._width: Optional[int] = width
self._height: Optional[int] = height
self._video_lists = video_lists
self.ptf = 0
self._cap = None # Instance cv2.VideoCapture
def get_file(self):
if self._video_lists:
self._video_file = self._video_lists[self.ptf]
self.ptf += 1
if self.ptf >= len(self._video_lists):
self.ptf = 0
def set_video_file(self, vf):
self._video_file = vf
return self._video_file
# ------------------------------------------------------------------
# Implémentation des méthodes abstraites
# ------------------------------------------------------------------
def open(self) -> None:
"""Ouvre le flux V4L2 via OpenCV et configure la résolution."""
self.get_file()
self._cap = cv2.VideoCapture(self._video_file)
if not self._cap.isOpened():
+1 -1
View File
@@ -49,7 +49,7 @@ class WebcamCapture(VideoCaptureInterface):
:param width: Largeur souhaitée (None = valeur par défaut du pilote)
:param height: Hauteur souhaitée (None = valeur par défaut du pilote)
"""
super().__init__(fps=fps, use_tracking=use_tracking, display=display, parent=parent)
super().__init__(fps=fps, use_tracking=use_tracking, display=display, parent=parent, jpeg_quality=jpeg_quality)
self._device_index: int = device_index
self._jpeg_quality: int = jpeg_quality
self._width: Optional[int] = width
+16 -11
View File
@@ -8,29 +8,34 @@ from .models import ExperimentConfig
@admin.register(ExperimentConfig)
class ExperimentConfigAdmin(admin.ModelAdmin):
"""Admin Django pour les configurations d'expérience."""
readonly_fields = ('experiment', )
list_display = ("experiment", "well", "px_per_mm", "fps",
readonly_fields = ('experiment', 'px_per_mm', 'fps', 'well_radius_mm',)
list_display = ("experiment_key", "well", "active", "planarian_count", "px_per_mm", "fps",
"thresh_immobile", "thresh_mobile",
"photo_mode", "chemo_strength", "created_at")
list_filter = ("photo_mode", "tube_axis")
search_fields = ("experiment", "well", "description")
"photo_mode", "chemo_strength", "created_at", )
list_filter = ("experiment_key__session_experiments__session", "experiment_key", "photo_mode", "thigmotaxis_wall_dist_mm", "planarian_count")
search_fields = ("experiment_key", "well_name", "description")
ordering = ("-created_at",)
fieldsets = (
(_("Identification"), {
"fields": ("experiment", "well", "description"),
"fields": ("experiment_key", "well", "active", "description"),
}),
(_("Calibration optique"), {
(_("Calibration optique: générée lors de la calibration"), {
"fields": ("px_per_mm", "fps", "well_radius_mm"),
"classes": ("collapse",),
}),
(_("Seuils de mobilité EthoVision"), {
"fields": ("thresh_immobile", "thresh_mobile"),
"classes": ("collapse",),
}),
(_("Tracker"), {
"fields": ("tube_axis", "min_area_px", "planarian_count"),
"fields": ("tube_axis", "min_area_px", "max_area_ratio", "planarian_count", "merge_kernel_size", "min_contour_dist_px"),
"classes": ("collapse",),
}),
(_("Thigmotactisme"), {
"fields": ("thigmotaxis_wall_dist_mm",),
"classes": ("collapse",),
}),
(_("Phototactisme"), {
"fields": ("photo_mode", "photo_strength", "photo_x", "photo_y"),
@@ -52,19 +57,19 @@ class ExperimentConfigAdmin(admin.ModelAdmin):
@admin.action(description=_("Exporter un template CSV de ces configurations"))
def export_csv_template(self, request, queryset):
import csv
from django.http import HttpResponse
from django.http import FileResponse
from io import StringIO
output = StringIO()
fields = [f.name for f in ExperimentConfig._meta.fields if f.name != "id"] # @UndefinedVariable
writer = csv.DictWriter(output, fieldnames=fields)
writer.writeheader()
for obj in queryset:
row = {f: getattr(obj, f) for f in fields}
writer.writerow(row)
response = HttpResponse(output.getvalue(), content_type="text/csv")
response = FileResponse(output.getvalue(), content_type='text/csv')
response["Content-Disposition"] = 'attachment; filename="experiment_configs.csv"'
return response
@@ -0,0 +1,68 @@
import logging
import asyncio
from asgiref.sync import async_to_sync
from django.conf import settings
from modules.planarian_metrics import ReductStoreClient
logger = logging.getLogger(__name__)
def _get_reduct_client() -> ReductStoreClient:
"""Instancie le client ReductStore depuis les settings Django."""
return ReductStoreClient(url=settings.REDUCTSTORE_URL, token=settings.REDUCTSTORE_TOKEN)
def export_csv_sync(
*,
experiment,
well,
uuid,
planarian,
record_type,
start=None,
stop=None,
):
#@async_to_sync
async def _run():
client = _get_reduct_client()
await client.connect()
return await client.export_csv_response(
experiment=experiment,
well=well,
uuid=uuid,
planarian=planarian,
record_type=record_type,
start=start,
stop=stop,
)
#return _run()
return asyncio.run(_run())
def export_csv_file_sync(
*,
experiment,
well,
uuid,
planarian,
record_type,
):
async def _run():
client = _get_reduct_client()
await client.connect()
try:
return await client.export_csv(
experiment=experiment,
well=well,
uuid=uuid,
planarian=planarian,
record_type=record_type,
output_dir=settings.CSV_EXPORT_DIR,
)
finally:
await client.close()
return asyncio.run(_run())
-91
View File
@@ -1,91 +0,0 @@
# planarian/forms.py
import csv
import io
from django import forms
from django.utils.translation import gettext_lazy as _
from .models import ExperimentConfig
class ExperimentConfigForm(forms.ModelForm):
"""Formulaire de saisie/modification d'un ExperimentConfig."""
class Meta:
model = ExperimentConfig
fields = "__all__"
widgets = {
"description": forms.Textarea(attrs={"rows": 3}),
}
def clean(self):
cleaned = super().clean()
if cleaned.get("thresh_immobile", 0) >= cleaned.get("thresh_mobile", 1):
raise forms.ValidationError(
_("Le seuil Immobile doit être inférieur au seuil Mobile.")
)
if cleaned.get("avoid_radius_mm", 0) >= cleaned.get("aggreg_radius_mm", 1):
raise forms.ValidationError(
_("Le rayon d'évitement doit être inférieur au rayon d'agrégation.")
)
return cleaned
class CsvImportForm(forms.Form):
"""Formulaire d'import de paramètres depuis un fichier CSV."""
csv_file = forms.FileField(
label=_("Fichier CSV"),
help_text=_(
"Colonnes obligatoires : experiment, well, px_per_mm, fps. "
"Toutes les autres colonnes sont optionnelles."
),
)
overwrite = forms.BooleanField(
required=False,
initial=False,
label=_("Écraser les configurations existantes"),
)
def clean_csv_file(self):
f = self.cleaned_data["csv_file"]
try:
content = f.read().decode("utf-8")
reader = csv.DictReader(io.StringIO(content))
rows = list(reader)
except Exception as e:
raise forms.ValidationError(_("Fichier CSV invalide : %(err)s") % {"err": e})
required = {"experiment", "well", "px_per_mm", "fps"}
if rows:
missing = required - set(rows[0].keys())
if missing:
raise forms.ValidationError(
_("Colonnes manquantes : %(cols)s") % {"cols": ", ".join(missing)}
)
self.csv_rows = rows
return f
class ExportCsvForm(forms.Form):
"""Formulaire de demande d'export CSV depuis ReductStore."""
experiment = forms.CharField(label=_("Expérience"), max_length=100)
well = forms.CharField(label=_("Puits"), max_length=20)
planarian = forms.IntegerField(label=_("Index planaire"), initial=0, min_value=0)
record_type = forms.ChoiceField(
label=_("Type d'enregistrement"),
choices=[("frame", _("Frame par frame")), ("summary", _("Résumé"))],
initial="frame",
)
start_dt = forms.DateTimeField(
label=_("Début (UTC)"),
required=False,
widget=forms.DateTimeInput(attrs={"type": "datetime-local"}),
)
stop_dt = forms.DateTimeField(
label=_("Fin (UTC)"),
required=False,
widget=forms.DateTimeInput(attrs={"type": "datetime-local"}),
)
+56 -45
View File
@@ -1,13 +1,17 @@
# planarian/models.py
from django.db import models
from django.dispatch import receiver
from django.db.models.signals import post_save
from django.conf import settings
#from django.conf import settings
from django.utils.translation import gettext_lazy as _
from django.contrib.auth.models import User
from scanner.models import Experiment, Well, WellPosition
from scanner.constants import ScannerConstants
from scanner.models import Experiment, Well
WELL_CHOICES = []
def get_well_choices():
wells = Well.objects.order_by('name').all()
for well in wells:
WELL_CHOICES.append((well.name, well.name))
class ExperimentConfig(models.Model):
"""
@@ -15,22 +19,15 @@ class ExperimentConfig(models.Model):
Peut être créé depuis Django admin, une vue formulaire ou un import CSV.
"""
author = models.ForeignKey(User, on_delete=models.CASCADE, verbose_name="Auteur", null=True, blank=True)
experiment_key = models.ForeignKey(Experiment, verbose_name="Expérience", on_delete=models.CASCADE, null=True, blank=False)
experiment = models.CharField(_("Identifiant expérience"), max_length=128, null=True, blank=False, default='Identifier' )
well = models.CharField(_("Puit"), help_text=_("Nom du puit"), max_length=8, choices=WELL_CHOICES, null=True, blank=False, default='A1' )
# --- Identification ---
idendifier = models.CharField(
max_length=100,
verbose_name=_("Identifiant d'expérience"),
help_text=_("Ex : exp_2026_04_25_ctrl"),
)
description = models.TextField( blank=True, verbose_name=_("Description"), default="-")
experiment = models.ForeignKey(Experiment, on_delete=models.CASCADE, related_name="experiment_well" , null=True, blank=True)
well = models.ForeignKey(Well, verbose_name="Puit", on_delete=models.CASCADE, related_name="well_experiment", null=True, blank=True )
description = models.TextField(
blank=True,
verbose_name=_("Description"),
)
created_at = models.DateTimeField(auto_now_add=True, verbose_name=_("Créé le"))
active = models.BooleanField(_("Active"), default=True)
# --- Calibration optique ---
# px_per_mm, fps, well_radius_mm
@@ -42,10 +39,12 @@ class ExperimentConfig(models.Model):
fps = models.FloatField(
default=5.0,
verbose_name=_("FPS de capture"),
help_text=_("Image de capture en img/s"),
)
well_radius_mm = models.FloatField(
default=8.0,
verbose_name=_("Rayon du puits (mm)"),
verbose_name=_("Rayon du puits"),
help_text=_("En mm"),
)
# --- Seuils de mobilité EthoVision ---
@@ -69,11 +68,30 @@ class ExperimentConfig(models.Model):
default=20,
verbose_name=_("Surface min détection (px²)"),
)
max_area_ratio = models.FloatField(
default=0.10,
verbose_name=_("Surface max contour (fraction de la frame)"),
help_text=_("Ratio de la surface du puits, ex: 0.10 pour 10%"),
)
planarian_count = models.IntegerField(
default=1,
verbose_name=_("Nombre de planaires"),
)
merge_kernel_size = models.PositiveIntegerField(
_("Taille du kernel"),
help_text=_("taille du kernel elliptique de fusion des fragments (px). Augmenter si fragments résiduels"),
default=15
)
min_contour_dist_px = models.PositiveIntegerField(
_("Distance <contour>"),
help_text=_("Distance min entre deux contours pour les considérer comme individus distincts. Défaut : 40px. Augmenter si IDs multiples persistent"),
default=40
)
# --- Thigmotactisme ---
thigmotaxis_wall_dist_mm = models.FloatField(
default=1.0,
@@ -107,23 +125,33 @@ class ExperimentConfig(models.Model):
avoid_radius_mm = models.FloatField(default=3.0, verbose_name=_("Rayon évitement (mm)"))
aggreg_radius_mm = models.FloatField(default=6.0, verbose_name=_("Rayon agrégation (mm)"))
class Meta:
verbose_name = _("Configuration expérience")
verbose_name_plural = _("Configurations expériences")
unique_together = ("experiment", "well")
verbose_name = _("Configuration d'une expérience")
verbose_name_plural = _("Configurations des expériences")
unique_together = ("experiment_key", "well")
ordering = ["-created_at"]
def __str__(self):
return f"{self.experiment} / {self.well.name}"
return f"{self.experiment_key}:{self.well}"
def save(self, *args, **kwargs):
if not self.author:
self.author = self.experiment_key.author
self.experiment = self.experiment_key.identifier
super().save(*args, **kwargs)
def get_session(self):
return self.experiment.session_experiments.first() if self.experiment else None
se = self.experiment_key.session_experiments.first() if self.experiment_key else None
return se.session
def to_params_dict(self) -> dict:
"""Retourne un dict compatible avec ExperimentParams."""
return {
"experiment": self.idendifier,
"well": self.well.name,
"experiment": self.experiment,
"well": self.well,
"px_per_mm": self.px_per_mm,
"fps": self.fps,
"well_radius_mm": self.well_radius_mm,
@@ -131,6 +159,9 @@ class ExperimentConfig(models.Model):
"thresh_mobile": self.thresh_mobile,
"tube_axis": self.tube_axis,
"min_area_px": self.min_area_px,
"max_area_ratio": self.max_area_ratio,
"merge_kernel_size": self.merge_kernel_size,
"min_contour_dist_px": self.min_contour_dist_px,
"planarian_count": self.planarian_count,
"thigmotaxis_wall_dist_mm": self.thigmotaxis_wall_dist_mm,
"photo_mode": self.photo_mode,
@@ -143,23 +174,3 @@ class ExperimentConfig(models.Model):
"aggreg_radius_mm": self.aggreg_radius_mm,
}
def save(self, *args, **kwargs):
session = self.get_session()
position = self.experiment.multiwell.position
dte = self.experiment.multiwell.finished.isoformat()
self.idendifier = f'{session}-{position}-{self.well.name}-{dte}'
super().save(*args, **kwargs)
@receiver(post_save, sender=ExperimentConfig)
def create_well_position(sender, instance, created, **kwargs):
active_well = WellPosition.active_well(instance.multiwel, instance.well)
instance.px_per_mm = active_well.px_per_mm
instance.well_radius_mm = instance.experiment.multiwell.diameter / 2
conf = ScannerConstants().get()
instance.fps = conf.video_frame_rate
instance.save()
@@ -0,0 +1,12 @@
.multiwell_cards {
display: grid;
grid-template-columns: repeat(6, 1fr);
justify-items: center;
align-items: center;
}
button.multiwell {
padding: 0.2em ;
}
+80
View File
@@ -0,0 +1,80 @@
# tasks.py
from celery import shared_task, group
from celery.utils.log import get_task_logger
from scanner.models import SessionExperiment, get_uuid_from_session, Experiment
from .models import ExperimentConfig
from .export_service import export_csv_file_sync
logger = get_task_logger(__name__)
@shared_task(bind=True, autoretry_for=(Exception,), retry_backoff=True, retry_kwargs={"max_retries": 3},)
def export_single_metric(self, *, experiment, well, uuid, planarian, record_type,):
"""
Exporte UN fichier CSV.
"""
logger.info( f"Export start {experiment} {well} {planarian} {record_type}")
f, n = export_csv_file_sync(
experiment=experiment,
well=well,
uuid=uuid,
planarian=planarian,
record_type=record_type,
)
logger.info( f"Export done {f} ({n} rows)" )
return {"file": f, "rows": n, }
@shared_task
def export_experiment_metrics_task(experiment_id):
experiment = Experiment.objects.filter(pk=experiment_id).first()
if not experiment:
return
jobs = []
configs = (ExperimentConfig.objects.filter(experiment_key_id=experiment.id).order_by("well"))
for conf in configs:
well = conf.well
count = conf.planarian_count
session = conf.get_session()
uuid = get_uuid_from_session(session.id, conf.experiment_key.multiwell.position, well, )
for record_type in ["frame", "summary"]:
for planarian in range(count):
'''
jobs.append(
export_single_metric.s(
experiment=experiment.identifier,
well=well,
uuid=uuid,
planarian=planarian,
record_type=record_type,
)
)
'''
try:
f, n = export_csv_file_sync(
experiment=experiment.identifier,
well=well,
uuid=uuid,
planarian=planarian,
record_type=record_type,
)
logger.info( f"Export done {f} ({n} rows)" )
except Exception as e:
logger.exception(e)
'''
result = group(jobs).apply_async()
logger.info(f"{len(jobs)} exports launched group_id={result.id}")
return {"group_id": result.id,"jobs": len(jobs), }'''
@shared_task
def export_session_metrics_task(session_id):
experiments = SessionExperiment.experiment_by_session(session_id, active=False)
for experiment in experiments:
export_experiment_metrics_task.delay(experiment.id)
@@ -0,0 +1,76 @@
{% extends "scanner/base.html" %}
{% load i18n home_tags scanner_tags %}
{% block styles %}
{{ block.super }}
<link href="/static/planarian/css/planarian.css" rel="stylesheet">
{% endblock %}
{% block columns %}{% endblock %}
{% block sidebar_list %}
<a href="/" class="w3-bar-item w3-btn w3-hover-opacity"><i class="fa-solid fa-house w3-text-orange w3-xlarge"></i> {% trans "Retour accueil" %}</a>
<form method="post" class="w3-bar-item" action="">
{% csrf_token %}
<select id="_sid" name="_sid" class="w3-select w3-margin-bottom" onchange="this.form.submit()" title="{% trans "Ensemble d'expériences" %}">
<option value="0">---- {% trans "Session" %}</option>
{% for s in sessions %}
<option value="{{ s.id }}" {% if s.id == current_session.id %}selected{% endif %}>{{ s }}</option>
{% endfor %}
</select>
<div class="w3-margin-left w3-margin-bottom">
{% include "scanner/experiment-inc.html" %}
</div>
</form>
{% block export_csv %}
{% if current_session and current_experiment %}
{% url "planarian:api-export-csv" as url_export %}
<a href="#" class="w3-bar-item w3-btn w3-hover-opacity" onclick="export_csv('{{ url_export }}', {{ current_experiment.id }}, 'experiment_csv')">
<i class="fa-solid fa-file-export w3-text-red w3-xlarge"></i> {% trans "Exporter les metrics de l'expérience" %}<br>
<span class="w3-margin-left-5">&nbsp;$> {{ export_csv_destination }}
</a>
<a href="#" class="w3-bar-item w3-btn w3-hover-opacity" onclick="export_csv('{{ url_export }}', {{ current_session.id }}, 'session_csv')">
<i class="fa-solid fa-file-export w3-text-pink w3-xxlarge"></i> {% trans "Exporter les metrics de la session" %}<br>
<span class="w3-margin-left-5">&nbsp;$> {{ export_csv_destination }}
</a>
{% endif %}
{% endblock %}
{% endblock %}
{% block js_footer %}
{{ block.super }}
<script>
const export_msg = "{% trans "Confirmer l'export des vidéos. ATTENTION le processus peut être long!" %}";
// Auto-dismiss messages after 5 seconds
document.addEventListener('DOMContentLoaded', function() {
const messages = document.querySelectorAll('.alert');
messages.forEach(function(message) {
setTimeout(function() {
// Fade out effect
message.style.transition = 'opacity 0.5s ease-out';
message.style.opacity = '0';
// Remove from DOM after fade
setTimeout(function() {
message.remove();
}, 500);
}, 15000); // 15 seconds
});
});
function export_csv(url, pid, mode) {
fetch(url, {
method: 'POST',
headers: { 'Content-Type': 'application/json' },
body: JSON.stringify({
action: mode,
pid: pid,
})
})
.then(response => response.json())
.then(res => { alert(res.msg); })
.catch(error => { console.error('Erreur:', error); });
}
</script>
{% endblock %}
@@ -1,503 +0,0 @@
{% extends "scanner/base.html" %}
{% load i18n %}
{% block content %}
<div class="w3-container w3-padding-32" style="max-width:960px; margin:auto;">
<!-- En-tête de la page -->
<div class="w3-panel w3-teal w3-round-large w3-padding-16" style="margin-bottom:2rem;">
<div class="w3-row w3-bar-item">
<span class="w3-xlarge">
<i class="w3-margin-right">🔬</i>
{% if object %}
{% trans "Modifier la configuration" %} — {{ object }}
{% else %}
{% trans "Nouvelle configuration d'expérience" %}
{% endif %}
</span>
</div>
</div>
<!-- Messages Django -->
{% for message in messages %}
<div class="w3-panel w3-round
{% if message.tags == 'success' %}w3-green
{% elif message.tags == 'error' %}w3-red
{% elif message.tags == 'warning' %}w3-orange
{% else %}w3-blue{% endif %}">
<p>{{ message }}</p>
</div>
{% endfor %}
<form method="post" novalidate>
{% csrf_token %}
<!-- Erreurs globales du formulaire -->
{% if form.non_field_errors %}
<div class="w3-panel w3-red w3-round">
{% for error in form.non_field_errors %}
<p>⚠ {{ error }}</p>
{% endfor %}
</div>
{% endif %}
<!-- ============================================================
Section 1 : Identification
============================================================ -->
<div class="w3-card-4 w3-round-large w3-margin-bottom">
<header class="w3-container w3-teal w3-round-top-large">
<h3 class="w3-text-white">{% trans "Identification" %}</h3>
</header>
<div class="w3-container w3-padding-24">
<div class="w3-row-padding">
<!-- Experiment -->
<div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-teal"><b>{{ form.experiment.label }}</b></label>
{% if form.experiment.help_text %}
<p class="w3-small w3-text-grey" style="margin:0 0 4px;">{{ form.experiment.help_text }}</p>
{% endif %}
{{ form.experiment }}
{% if form.experiment.errors %}
<span class="w3-text-red w3-small">{{ form.experiment.errors|join:", " }}</span>
{% endif %}
</div>
<!-- Well -->
<div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-teal"><b>{{ form.well.label }}</b></label>
{% if form.well.help_text %}
<p class="w3-small w3-text-grey" style="margin:0 0 4px;">{{ form.well.help_text }}</p>
{% endif %}
{{ form.well }}
{% if form.well.errors %}
<span class="w3-text-red w3-small">{{ form.well.errors|join:", " }}</span>
{% endif %}
</div>
</div>
<!-- Description -->
<div class="w3-margin-bottom">
<label class="w3-text-teal"><b>{{ form.description.label }}</b></label>
{{ form.description }}
{% if form.description.errors %}
<span class="w3-text-red w3-small">{{ form.description.errors|join:", " }}</span>
{% endif %}
</div>
</div>
</div>
<!-- ============================================================
Section 2 : Calibration optique
============================================================ -->
<div class="w3-card-4 w3-round-large w3-margin-bottom">
<header class="w3-container w3-blue-grey w3-round-top-large">
<h3 class="w3-text-white">{% trans "Calibration optique" %}</h3>
</header>
<div class="w3-container w3-padding-24">
<div class="w3-row-padding">
<div class="w3-col m4 s12 w3-margin-bottom">
<label class="w3-text-blue-grey"><b>{{ form.px_per_mm.label }}</b></label>
{% if form.px_per_mm.help_text %}
<p class="w3-small w3-text-grey" style="margin:0 0 4px;">{{ form.px_per_mm.help_text }}</p>
{% endif %}
{{ form.px_per_mm }}
{% if form.px_per_mm.errors %}
<span class="w3-text-red w3-small">{{ form.px_per_mm.errors|join:", " }}</span>
{% endif %}
</div>
<div class="w3-col m4 s12 w3-margin-bottom">
<label class="w3-text-blue-grey"><b>{{ form.fps.label }}</b></label>
{{ form.fps }}
{% if form.fps.errors %}
<span class="w3-text-red w3-small">{{ form.fps.errors|join:", " }}</span>
{% endif %}
</div>
<div class="w3-col m4 s12 w3-margin-bottom">
<label class="w3-text-blue-grey"><b>{{ form.well_radius_mm.label }}</b></label>
{{ form.well_radius_mm }}
{% if form.well_radius_mm.errors %}
<span class="w3-text-red w3-small">{{ form.well_radius_mm.errors|join:", " }}</span>
{% endif %}
</div>
</div>
</div>
</div>
<!-- ============================================================
Section 3 : Seuils de mobilité EthoVision
============================================================ -->
<div class="w3-card-4 w3-round-large w3-margin-bottom">
<header class="w3-container w3-indigo w3-round-top-large">
<h3 class="w3-text-white">{% trans "Seuils de mobilité EthoVision XT" %}</h3>
</header>
<div class="w3-container w3-padding-24">
<!-- Visualisation des seuils -->
<div class="w3-light-grey w3-round w3-margin-bottom" style="height:32px; position:relative; overflow:hidden;">
<div style="position:absolute; left:0; width:13%; height:100%; background:#c0392b; display:flex; align-items:center; justify-content:center;">
<span class="w3-small w3-text-white"><b>{% trans "Immobile" %}</b></span>
</div>
<div style="position:absolute; left:13%; width:27%; height:100%; background:#e67e22; display:flex; align-items:center; justify-content:center;">
<span class="w3-small w3-text-white"><b>{% trans "Mobile" %}</b></span>
</div>
<div style="position:absolute; left:40%; right:0; height:100%; background:#27ae60; display:flex; align-items:center; justify-content:center;">
<span class="w3-small w3-text-white"><b>{% trans "Très mobile" %}</b></span>
</div>
</div>
<p class="w3-small w3-text-grey" style="margin-top:-8px; margin-bottom:16px;">
{% trans "Représentation indicative des zones de mobilité (défauts EthoVision : 0.2 / 1.5 mm/s)" %}
</p>
<div class="w3-row-padding">
<div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-indigo"><b>{{ form.thresh_immobile.label }}</b></label>
<p class="w3-small w3-text-grey" style="margin:0 0 4px;">{% trans "En-dessous : Immobile (mm/s)" %}</p>
{{ form.thresh_immobile }}
{% if form.thresh_immobile.errors %}
<span class="w3-text-red w3-small">{{ form.thresh_immobile.errors|join:", " }}</span>
{% endif %}
</div>
<div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-indigo"><b>{{ form.thresh_mobile.label }}</b></label>
<p class="w3-small w3-text-grey" style="margin:0 0 4px;">{% trans "En-dessous : Mobile, au-delà : Très mobile (mm/s)" %}</p>
{{ form.thresh_mobile }}
{% if form.thresh_mobile.errors %}
<span class="w3-text-red w3-small">{{ form.thresh_mobile.errors|join:", " }}</span>
{% endif %}
</div>
</div>
</div>
</div>
<!-- ============================================================
Section 4 : Tracker
============================================================ -->
<div class="w3-card-4 w3-round-large w3-margin-bottom">
<header class="w3-container w3-dark-grey w3-round-top-large">
<h3 class="w3-text-white">{% trans "Tracker" %}</h3>
</header>
<div class="w3-container w3-padding-24">
<div class="w3-row-padding">
<div class="w3-col m4 s12 w3-margin-bottom">
<label class="w3-text-dark-grey"><b>{{ form.tube_axis.label }}</b></label>
{{ form.tube_axis }}
{% if form.tube_axis.errors %}
<span class="w3-text-red w3-small">{{ form.tube_axis.errors|join:", " }}</span>
{% endif %}
</div>
<div class="w3-col m4 s12 w3-margin-bottom">
<label class="w3-text-dark-grey"><b>{{ form.min_area_px.label }}</b></label>
{{ form.min_area_px }}
{% if form.min_area_px.errors %}
<span class="w3-text-red w3-small">{{ form.min_area_px.errors|join:", " }}</span>
{% endif %}
</div>
<div class="w3-col m4 s12 w3-margin-bottom">
<label class="w3-text-dark-grey"><b>{{ form.planarian_count.label }}</b></label>
{{ form.planarian_count }}
{% if form.planarian_count.errors %}
<span class="w3-text-red w3-small">{{ form.planarian_count.errors|join:", " }}</span>
{% endif %}
</div>
</div>
</div>
</div>
<!-- ============================================================
Section 5 : Comportements (accordéon W3.CSS)
============================================================ -->
<div class="w3-card-4 w3-round-large w3-margin-bottom">
<header class="w3-container w3-teal w3-round-top-large">
<h3 class="w3-text-white">{% trans "Comportements" %}</h3>
</header>
<!-- --- Thigmotactisme --- -->
<div class="w3-container w3-padding-16 w3-border-bottom">
<button type="button" class="w3-button w3-block w3-left-align w3-hover-light-grey"
onclick="toggleSection('thigmo')">
<span class="w3-large">🫧</span>
<b class="w3-margin-left">{% trans "Thigmotactisme" %}</b>
<span class="w3-small w3-text-grey w3-margin-left">
{% trans "Attraction vers la paroi du puits" %}
</span>
<span id="thigmo-icon" class="w3-right"></span>
</button>
<div id="thigmo" class="w3-padding-top">
<div class="w3-row-padding">
<div class="w3-col m6 s12">
<label class="w3-text-teal"><b>{{ form.thigmotaxis_wall_dist_mm.label }}</b></label>
<p class="w3-small w3-text-grey" style="margin:0 0 4px;">
{% trans "Distance à la paroi considérée « près du bord » (mm)" %}
</p>
{{ form.thigmotaxis_wall_dist_mm }}
{% if form.thigmotaxis_wall_dist_mm.errors %}
<span class="w3-text-red w3-small">{{ form.thigmotaxis_wall_dist_mm.errors|join:", " }}</span>
{% endif %}
</div>
</div>
</div>
</div>
<!-- --- Phototactisme --- -->
<div class="w3-container w3-padding-16 w3-border-bottom">
<button type="button" class="w3-button w3-block w3-left-align w3-hover-light-grey"
onclick="toggleSection('photo')">
<span class="w3-large">💡</span>
<b class="w3-margin-left">{% trans "Phototactisme" %}</b>
<span class="w3-small w3-text-grey w3-margin-left">
{% trans "Fuite de la lumière" %}
</span>
<span id="photo-icon" class="w3-right"></span>
</button>
<div id="photo" class="w3-hide w3-padding-top">
<div class="w3-row-padding">
<div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-teal"><b>{{ form.photo_mode.label }}</b></label>
{{ form.photo_mode }}
{% if form.photo_mode.errors %}
<span class="w3-text-red w3-small">{{ form.photo_mode.errors|join:", " }}</span>
{% endif %}
</div>
<div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-teal"><b>{{ form.photo_strength.label }}</b></label>
<p class="w3-small w3-text-grey" style="margin:0 0 4px;">{% trans "0.0 = désactivé → 1.0 = fort" %}</p>
{{ form.photo_strength }}
{% if form.photo_strength.errors %}
<span class="w3-text-red w3-small">{{ form.photo_strength.errors|join:", " }}</span>
{% endif %}
</div>
<div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-teal"><b>{{ form.photo_x.label }}</b></label>
{{ form.photo_x }}
{% if form.photo_x.errors %}
<span class="w3-text-red w3-small">{{ form.photo_x.errors|join:", " }}</span>
{% endif %}
</div>
<div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-teal"><b>{{ form.photo_y.label }}</b></label>
{{ form.photo_y }}
{% if form.photo_y.errors %}
<span class="w3-text-red w3-small">{{ form.photo_y.errors|join:", " }}</span>
{% endif %}
</div>
</div>
</div>
</div>
<!-- --- Chimiotactisme --- -->
<div class="w3-container w3-padding-16 w3-border-bottom">
<button type="button" class="w3-button w3-block w3-left-align w3-hover-light-grey"
onclick="toggleSection('chemo')">
<span class="w3-large">🍖</span>
<b class="w3-margin-left">{% trans "Chimiotactisme" %}</b>
<span class="w3-small w3-text-grey w3-margin-left">
{% trans "Attraction vers une source de nourriture" %}
</span>
<span id="chemo-icon" class="w3-right"></span>
</button>
<div id="chemo" class="w3-hide w3-padding-top">
<div class="w3-row-padding">
<div class="w3-col m4 s12 w3-margin-bottom">
<label class="w3-text-teal"><b>{{ form.chemo_strength.label }}</b></label>
<p class="w3-small w3-text-grey" style="margin:0 0 4px;">{% trans "0.0 = désactivé → 1.0 = fort" %}</p>
{{ form.chemo_strength }}
{% if form.chemo_strength.errors %}
<span class="w3-text-red w3-small">{{ form.chemo_strength.errors|join:", " }}</span>
{% endif %}
</div>
<div class="w3-col m4 s12 w3-margin-bottom">
<label class="w3-text-teal"><b>{{ form.chemo_x.label }}</b></label>
{{ form.chemo_x }}
{% if form.chemo_x.errors %}
<span class="w3-text-red w3-small">{{ form.chemo_x.errors|join:", " }}</span>
{% endif %}
</div>
<div class="w3-col m4 s12 w3-margin-bottom">
<label class="w3-text-teal"><b>{{ form.chemo_y.label }}</b></label>
{{ form.chemo_y }}
{% if form.chemo_y.errors %}
<span class="w3-text-red w3-small">{{ form.chemo_y.errors|join:", " }}</span>
{% endif %}
</div>
<div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-teal"><b>{{ form.chemo_radius_mm.label }}</b></label>
{{ form.chemo_radius_mm }}
{% if form.chemo_radius_mm.errors %}
<span class="w3-text-red w3-small">{{ form.chemo_radius_mm.errors|join:", " }}</span>
{% endif %}
</div>
</div>
</div>
</div>
<!-- --- Interactions inter-individus --- -->
<div class="w3-container w3-padding-16">
<button type="button" class="w3-button w3-block w3-left-align w3-hover-light-grey"
onclick="toggleSection('social')">
<span class="w3-large">🔀</span>
<b class="w3-margin-left">{% trans "Interactions inter-individus" %}</b>
<span class="w3-small w3-text-grey w3-margin-left">
{% trans "Évitement et agrégation" %}
</span>
<span id="social-icon" class="w3-right"></span>
</button>
<div id="social" class="w3-hide w3-padding-top">
<div class="w3-row-padding">
<div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-teal"><b>{{ form.avoid_radius_mm.label }}</b></label>
<p class="w3-small w3-text-grey" style="margin:0 0 4px;">{% trans "Rayon de répulsion courte portée (mm)" %}</p>
{{ form.avoid_radius_mm }}
{% if form.avoid_radius_mm.errors %}
<span class="w3-text-red w3-small">{{ form.avoid_radius_mm.errors|join:", " }}</span>
{% endif %}
</div>
<div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-teal"><b>{{ form.aggreg_radius_mm.label }}</b></label>
<p class="w3-small w3-text-grey" style="margin:0 0 4px;">{% trans "Rayon d'attraction longue portée — doit être > rayon évitement (mm)" %}</p>
{{ form.aggreg_radius_mm }}
{% if form.aggreg_radius_mm.errors %}
<span class="w3-text-red w3-small">{{ form.aggreg_radius_mm.errors|join:", " }}</span>
{% endif %}
</div>
</div>
</div>
</div>
</div><!-- fin card comportements -->
<!-- ============================================================
Boutons d'action
============================================================ -->
<div class="w3-row-padding w3-margin-top">
<div class="w3-col m8 s12 w3-margin-bottom">
<button type="submit" class="w3-button w3-teal w3-round w3-large w3-padding-large">
{% if object %}
💾 {% trans "Enregistrer les modifications" %}
{% else %}
{% trans "Créer la configuration" %}
{% endif %}
</button>
<a href="{% url 'planarian:experiment-list' %}"
class="w3-button w3-light-grey w3-round w3-large w3-padding-large w3-margin-left">
✖ {% trans "Annuler" %}
</a>
</div>
{% if object %}
<div class="w3-col m4 s12 w3-right-align w3-margin-bottom">
<a href="{% url 'planarian:export-csv' %}?experiment={{ object.experiment }}&well={{ object.well }}"
class="w3-button w3-blue w3-round w3-large w3-padding-large">
📥 {% trans "Exporter CSV" %}
</a>
</div>
{% endif %}
</div>
</form><!-- fin form -->
</div><!-- fin container -->
<!-- ============================================================
Styles W3.CSS pour les champs de formulaire Django
(Django génère des <input> bruts sans classes — on les stylise ici)
============================================================ -->
<style>
/* Champs texte, number, select */
input[type="text"],
input[type="number"],
input[type="email"],
textarea,
select {
width: 100%;
padding: 8px 12px;
border: 1px solid #ccc;
border-radius: 4px;
font-size: 15px;
box-sizing: border-box;
margin-top: 2px;
background-color: #fafafa;
transition: border-color 0.2s;
}
input[type="text"]:focus,
input[type="number"]:focus,
textarea:focus,
select:focus {
border-color: #009688; /* teal W3.CSS */
outline: none;
background-color: #fff;
}
/* Champ en erreur */
input.errorfield, select.errorfield, textarea.errorfield {
border-color: #f44336;
background-color: #fff8f8;
}
/* Label au-dessus du champ */
label {
display: block;
margin-bottom: 2px;
font-size: 14px;
}
/* Sections accordéon */
[id$="-icon"] {
transition: transform 0.2s;
}
</style>
<script>
/**
* Bascule la visibilité d'une section accordéon.
* @param {string} id - Identifiant de la section (sans le préfixe)
*/
function toggleSection(id) {
const section = document.getElementById(id);
const icon = document.getElementById(id + '-icon');
if (section.classList.contains('w3-hide')) {
section.classList.remove('w3-hide');
if (icon) icon.textContent = '▲';
} else {
section.classList.add('w3-hide');
if (icon) icon.textContent = '▼';
}
}
/* Ouvrir automatiquement les sections qui contiennent des erreurs */
document.addEventListener('DOMContentLoaded', function () {
['thigmo', 'photo', 'chemo', 'social'].forEach(function (id) {
const section = document.getElementById(id);
if (section && section.querySelector('.w3-text-red')) {
section.classList.remove('w3-hide');
const icon = document.getElementById(id + '-icon');
if (icon) icon.textContent = '▲';
}
});
});
</script>
{% endblock %}
@@ -1,334 +0,0 @@
{% extends "base.html" %}
{% load i18n %}
{% block content %}
<div class="w3-container w3-padding-32" style="max-width:1200px; margin:auto;">
<!-- En-tête -->
<div class="w3-panel w3-teal w3-round-large w3-padding-16 w3-margin-bottom">
<div class="w3-row">
<div class="w3-col s12 m8 w3-bar-item">
<span class="w3-xlarge">
<i class="w3-margin-right">🔬</i>
{% trans "Configurations d'expériences" %}
</span>
</div>
<div class="w3-col s12 m4 w3-bar-item w3-right-align" style="padding-top:6px;">
<a href="{% url 'planarian:experiment-new' %}"
class="w3-button w3-white w3-round w3-text-teal">
{% trans "Nouvelle configuration" %}
</a>
</div>
</div>
</div>
<!-- Messages Django -->
{% for message in messages %}
<div class="w3-panel w3-round
{% if message.tags == 'success' %}w3-green
{% elif message.tags == 'error' %}w3-red
{% elif message.tags == 'warning' %}w3-orange
{% else %}w3-blue{% endif %}">
<p>{{ message }}</p>
</div>
{% endfor %}
<!-- Barre d'outils : recherche + import -->
<div class="w3-row-padding w3-margin-bottom">
<!-- Recherche côté client -->
<div class="w3-col m7 s12 w3-margin-bottom">
<div class="w3-border w3-round" style="display:flex; align-items:center; background:#fafafa;">
<span style="padding:0 10px; font-size:18px; color:#888;">🔍</span>
<input type="text" id="search-input"
placeholder="{% trans 'Filtrer par expérience, puits…' %}"
class="w3-input w3-border-0"
style="background:transparent;"
oninput="filterTable(this.value)">
</div>
</div>
<!-- Boutons import / export -->
<div class="w3-col m5 s12 w3-right-align w3-margin-bottom">
<a href="{% url 'planarian:import-params' %}"
class="w3-button w3-blue-grey w3-round w3-margin-right">
📂 {% trans "Importer CSV" %}
</a>
<a href="{% url 'planarian:export-csv' %}"
class="w3-button w3-blue w3-round">
📥 {% trans "Exporter CSV" %}
</a>
</div>
</div>
<!-- ============================================================
Tableau des configurations
============================================================ -->
{% if configs %}
<!-- Compteur -->
<p class="w3-text-grey w3-small" id="row-count">
{{ configs|length }} {% trans "configuration(s)" %}
</p>
<div class="w3-responsive w3-card-4 w3-round-large">
<table class="w3-table w3-striped w3-hoverable w3-bordered" id="config-table">
<thead>
<tr class="w3-teal">
<th onclick="sortTable(0)" class="sortable" title="{% trans 'Trier' %}">
{% trans "Expérience" %} <span class="sort-icon"></span>
</th>
<th onclick="sortTable(1)" class="sortable" title="{% trans 'Trier' %}">
{% trans "Puits" %} <span class="sort-icon"></span>
</th>
<th onclick="sortTable(2)" class="sortable w3-hide-small" title="{% trans 'Trier' %}">
{% trans "px/mm" %} <span class="sort-icon"></span>
</th>
<th class="w3-hide-small">{% trans "FPS" %}</th>
<th class="w3-hide-small">{% trans "Seuils (mm/s)" %}</th>
<th class="w3-hide-small">{% trans "Comportements" %}</th>
<th onclick="sortTable(6)" class="sortable w3-hide-small" title="{% trans 'Trier' %}">
{% trans "Créé le" %} <span class="sort-icon"></span>
</th>
<th>{% trans "Actions" %}</th>
</tr>
</thead>
<tbody id="config-tbody">
{% for cfg in configs %}
<tr class="config-row">
<!-- Expérience -->
<td>
<b>{{ cfg.experiment }}</b>
{% if cfg.description %}
<br><span class="w3-small w3-text-grey">{{ cfg.description|truncatechars:40 }}</span>
{% endif %}
</td>
<!-- Puits -->
<td>
<span class="w3-tag w3-teal w3-round">{{ cfg.well }}</span>
</td>
<!-- px/mm -->
<td class="w3-hide-small">{{ cfg.px_per_mm }}</td>
<!-- FPS -->
<td class="w3-hide-small">{{ cfg.fps }}</td>
<!-- Seuils de mobilité -->
<td class="w3-hide-small">
<span class="w3-tag w3-red w3-round w3-small"
title="{% trans 'Immobile' %}">
&lt; {{ cfg.thresh_immobile }}
</span>
<span class="w3-tag w3-orange w3-round w3-small"
title="{% trans 'Mobile' %}">
&lt; {{ cfg.thresh_mobile }}
</span>
</td>
<!-- Comportements actifs -->
<td class="w3-hide-small">
{% if cfg.thigmotaxis_wall_dist_mm > 0 %}
<span class="w3-tag w3-blue-grey w3-round w3-small w3-margin-right"
title="{% trans 'Thigmotactisme actif' %}">🫧</span>
{% endif %}
{% if cfg.photo_mode != 'none' and cfg.photo_strength > 0 %}
<span class="w3-tag w3-yellow w3-round w3-small w3-margin-right"
title="{% trans 'Phototactisme actif' %} ({{ cfg.photo_mode }})">💡</span>
{% endif %}
{% if cfg.chemo_strength > 0 %}
<span class="w3-tag w3-green w3-round w3-small w3-margin-right"
title="{% trans 'Chimiotactisme actif' %}">🍖</span>
{% endif %}
{% if cfg.avoid_radius_mm > 0 or cfg.aggreg_radius_mm > 0 %}
<span class="w3-tag w3-purple w3-round w3-small"
title="{% trans 'Interactions inter-individus' %}">🔀</span>
{% endif %}
</td>
<!-- Date de création -->
<td class="w3-hide-small w3-small w3-text-grey">
{{ cfg.created_at|date:"d/m/Y H:i" }}
</td>
<!-- Actions -->
<td style="white-space:nowrap;">
<a href="{% url 'planarian:experiment-edit' cfg.pk %}"
class="w3-button w3-small w3-teal w3-round"
title="{% trans 'Modifier' %}"></a>
<a href="{% url 'planarian:export-csv' %}?experiment={{ cfg.experiment }}&well={{ cfg.well }}"
class="w3-button w3-small w3-blue w3-round"
title="{% trans 'Exporter CSV' %}">📥</a>
<button type="button"
class="w3-button w3-small w3-red w3-round"
title="{% trans 'Supprimer' %}"
onclick="confirmDelete('{{ cfg.pk }}', '{{ cfg.experiment }}', '{{ cfg.well }}')">
🗑
</button>
</td>
</tr>
{% endfor %}
</tbody>
</table>
</div><!-- fin responsive -->
<!-- Message "aucun résultat" (filtrage JS) -->
<div id="no-results" class="w3-panel w3-pale-yellow w3-round w3-margin-top" style="display:none;">
<p>{% trans "Aucune configuration ne correspond à la recherche." %}</p>
</div>
{% else %}
<!-- Liste vide -->
<div class="w3-panel w3-pale-blue w3-round-large w3-padding-32" style="text-align:center;">
<p style="font-size:3rem; margin:0;">🔬</p>
<h3>{% trans "Aucune configuration pour l'instant." %}</h3>
<p class="w3-text-grey">
{% trans "Créez une première configuration ou importez un fichier CSV." %}
</p>
<a href="{% url 'planarian:experiment-new' %}"
class="w3-button w3-teal w3-round w3-large w3-margin-right">
{% trans "Nouvelle configuration" %}
</a>
<a href="{% url 'planarian:import-params' %}"
class="w3-button w3-blue-grey w3-round w3-large">
📂 {% trans "Importer CSV" %}
</a>
</div>
{% endif %}
</div><!-- fin container -->
<!-- ============================================================
Modal de confirmation de suppression
============================================================ -->
<div id="delete-modal" class="w3-modal">
<div class="w3-modal-content w3-round-large w3-card-4" style="max-width:420px; margin:auto; margin-top:10%;">
<header class="w3-container w3-red w3-round-top-large">
<h3 class="w3-text-white">🗑 {% trans "Confirmer la suppression" %}</h3>
</header>
<div class="w3-container w3-padding-24">
<p id="delete-msg"></p>
<form id="delete-form" method="post" action="">
{% csrf_token %}
<input type="hidden" name="_method" value="delete">
<button type="submit" class="w3-button w3-red w3-round w3-margin-right">
🗑 {% trans "Supprimer" %}
</button>
<button type="button" class="w3-button w3-light-grey w3-round"
onclick="document.getElementById('delete-modal').style.display='none'">
✖ {% trans "Annuler" %}
</button>
</form>
</div>
</div>
</div>
<!-- ============================================================
Styles
============================================================ -->
<style>
/* En-têtes de colonnes triables */
th.sortable {
cursor: pointer;
user-select: none;
}
th.sortable:hover {
background-color: #00796b;
}
.sort-icon {
font-size: 11px;
opacity: 0.7;
margin-left: 4px;
}
th.sort-asc .sort-icon::after { content: " ▲"; opacity: 1; }
th.sort-desc .sort-icon::after { content: " ▼"; opacity: 1; }
/* Tableau responsive */
#config-table td, #config-table th {
vertical-align: middle;
padding: 10px 12px;
}
</style>
<!-- ============================================================
JavaScript : filtrage + tri + modal suppression
============================================================ -->
<script>
// --- Filtrage dynamique ---
function filterTable(query) {
const q = query.toLowerCase().trim();
const rows = document.querySelectorAll('.config-row');
const noRes = document.getElementById('no-results');
const count = document.getElementById('row-count');
let visible = 0;
rows.forEach(function (row) {
const text = row.textContent.toLowerCase();
if (!q || text.includes(q)) {
row.style.display = '';
visible++;
} else {
row.style.display = 'none';
}
});
noRes.style.display = (visible === 0 && q) ? 'block' : 'none';
if (count) {
count.textContent = visible + ' {% trans "configuration(s)" %}';
}
}
// --- Tri de colonnes ---
let sortDir = {};
function sortTable(colIdx) {
const tbody = document.getElementById('config-tbody');
const rows = Array.from(tbody.querySelectorAll('.config-row'));
const th = document.querySelectorAll('#config-table thead th')[colIdx];
// Alterner ascendant / descendant
sortDir[colIdx] = sortDir[colIdx] === 'asc' ? 'desc' : 'asc';
// Réinitialiser les classes de toutes les colonnes
document.querySelectorAll('#config-table thead th').forEach(function (h) {
h.classList.remove('sort-asc', 'sort-desc');
});
th.classList.add(sortDir[colIdx] === 'asc' ? 'sort-asc' : 'sort-desc');
rows.sort(function (a, b) {
const cellA = a.querySelectorAll('td')[colIdx]?.textContent.trim() || '';
const cellB = b.querySelectorAll('td')[colIdx]?.textContent.trim() || '';
// Tri numérique si possible, sinon alphabétique
const numA = parseFloat(cellA);
const numB = parseFloat(cellB);
const cmp = (!isNaN(numA) && !isNaN(numB))
? numA - numB
: cellA.localeCompare(cellB, '{{ LANGUAGE_CODE|default:"fr" }}');
return sortDir[colIdx] === 'asc' ? cmp : -cmp;
});
rows.forEach(function (row) { tbody.appendChild(row); });
}
// --- Modal de suppression ---
function confirmDelete(pk, experiment, well) {
document.getElementById('delete-msg').textContent =
'{% trans "Supprimer la configuration" %} ' + experiment + ' / ' + well + ' ?';
document.getElementById('delete-form').action =
'{% url "planarian:experiment-list" %}' + pk + '/delete/';
document.getElementById('delete-modal').style.display = 'block';
}
// Fermer le modal en cliquant en dehors
window.onclick = function (e) {
const modal = document.getElementById('delete-modal');
if (e.target === modal) modal.style.display = 'none';
};
</script>
{% endblock %}
@@ -1,38 +1,10 @@
{% extends "base.html" %}
{% extends "planarian/base.html" %}
{% load i18n %}
{% block content %}
<div class="w3-container w3-padding-32" style="max-width:760px; margin:auto;">
<!-- En-tête -->
<div class="w3-panel w3-blue w3-round-large w3-padding-16 w3-margin-bottom">
<div class="w3-row">
<div class="w3-col s12 m8 w3-bar-item">
<span class="w3-xlarge">
📥 {% trans "Exporter les données vers CSV" %}
</span>
</div>
<div class="w3-col s12 m4 w3-bar-item w3-right-align" style="padding-top:6px;">
<a href="{% url 'planarian:experiment-list' %}"
class="w3-button w3-white w3-round w3-text-blue">
← {% trans "Retour à la liste" %}
</a>
</div>
</div>
</div>
<!-- Messages Django -->
{% for message in messages %}
<div class="w3-panel w3-round
{% if message.tags == 'success' %}w3-green
{% elif message.tags == 'error' %}w3-red
{% elif message.tags == 'warning' %}w3-orange
{% else %}w3-blue{% endif %}">
<p>{{ message }}</p>
</div>
{% endfor %}
<div class="w3-container w3-padding" style="max-width:760px; margin:auto;">
{% if current_session and current_experiment %}
{% include "inc/alert.html" %}
<!-- Explication -->
<div class="w3-panel w3-pale-blue w3-round w3-margin-bottom">
<p>
@@ -43,104 +15,54 @@
{% trans "Colonnes exportées compatibles EthoVision XT : distance, vitesse, états de mobilité, thigmotactisme." %}
</p>
</div>
<!-- Formulaire -->
<form method="post" novalidate>
{% csrf_token %}
<input type="hidden" id="_sid" name="_sid" value="{{ current_session.id }}">
<input type="hidden" id="_expid" name="_expid" value="{{ current_experiment.id }}">
{% if form.non_field_errors %}
<div class="w3-panel w3-red w3-round">
{% for error in form.non_field_errors %}
<p>⚠ {{ error }}</p>
{% endfor %}
</div>
{% endif %}
<div class="w3-card-4 w3-round-large">
<header class="w3-container w3-blue w3-round-top-large">
<div class="w3-card-4 w3-border w3-round w3-round-large">
<header class="w3-container w3-blue w3-round w3-round-top-large">
<h3 class="w3-text-white">{% trans "Paramètres d'export" %}</h3>
</header>
<div class="w3-container w3-padding-24">
<!-- Ligne 1 : expérience + puits -->
<div class="w3-row-padding w3-margin-bottom">
<div class="w3-col m7 s12 w3-margin-bottom">
<label class="w3-text-blue"><b>{{ form.experiment.label }}</b></label>
{% if form.experiment.help_text %}
<p class="w3-small w3-text-grey" style="margin:0 0 4px;">{{ form.experiment.help_text }}</p>
{% endif %}
<!-- Saisie libre ou sélection depuis les configs existantes -->
<input list="experiment-list" name="experiment" id="id_experiment"
value="{{ form.experiment.value|default:'' }}"
class="w3-input w3-border w3-round"
placeholder="{% trans 'Ex : exp_2026_04_25' %}">
<datalist id="experiment-list">
{% for cfg in experiment_choices %}
<option value="{{ cfg }}">
{% endfor %}
</datalist>
{% if form.experiment.errors %}
<span class="w3-text-red w3-small">{{ form.experiment.errors|join:", " }}</span>
{% endif %}
<label class="w3-text-blue"><b>{% trans "Expérience" %}</b></label>
<input type="text" name="experiment" value="{{ current_experiment.identifier }}" readonly/>
</div>
<div class="w3-col m5 s12 w3-margin-bottom">
<label class="w3-text-blue"><b>{{ form.well.label }}</b></label>
<input list="well-list" name="well" id="id_well"
value="{{ form.well.value|default:'' }}"
class="w3-input w3-border w3-round"
placeholder="{% trans 'Ex : A1' %}">
<datalist id="well-list">
{% for w in well_choices %}
<option value="{{ w }}">
<label class="w3-text-blue"><b>{% trans "Puits" %}</b></label>
<select name="well">
{% for well in well_choices %}
<option value="{{ well.name }}">{{ well.name }}</option>
{% endfor %}
</datalist>
{% if form.well.errors %}
<span class="w3-text-red w3-small">{{ form.well.errors|join:", " }}</span>
{% endif %}
</select>
</div>
</div>
<!-- Ligne 2 : planaire + type d'enregistrement -->
<div class="w3-row-padding w3-margin-bottom">
<div class="w3-col m4 s12 w3-margin-bottom">
<label class="w3-text-blue"><b>{{ form.planarian.label }}</b></label>
<p class="w3-small w3-text-grey" style="margin:0 0 4px;">
<label class="w3-text-blue"><b>{% trans "Index planaire" %}</b></label>
<p class="w3-small w3-text-light-grey" style="margin:0 0 4px;">
{% trans "Index du planaire dans le puits (commence à 0)" %}
</p>
{{ form.planarian }}
{% if form.planarian.errors %}
<span class="w3-text-red w3-small">{{ form.planarian.errors|join:", " }}</span>
{% endif %}
<input type="number" name="planarian" step="1" min="0" max="20" value="{{ planarian }}" />
</div>
<div class="w3-col m8 s12 w3-margin-bottom">
<label class="w3-text-blue"><b>{{ form.record_type.label }}</b></label>
<p class="w3-small w3-text-grey" style="margin:0 0 4px;">
<label class="w3-text-blue"><b>{% trans "Type d'enregistrement" %}</b></label>
<p class="w3-small w3-text-light-grey" style="margin:0 0 4px;">
{% trans "Frame par frame : une ligne par image. Résumé : métriques agrégées de la session." %}
</p>
<!-- Radio buttons stylisés W3 -->
<div class="w3-row-padding" style="margin-top:6px;">
{% for radio in form.record_type %}
<div class="w3-col m6 s12">
<label class="w3-button w3-block w3-round w3-border
{% if radio.data.value == form.record_type.value %}w3-blue w3-text-white{% else %}w3-white{% endif %}"
style="text-align:center; margin-bottom:6px; cursor:pointer;">
{{ radio.tag }} {{ radio.choice_label }}
</label>
<select name="record_type">
<option value="frame">{% trans "Frame par frame" %}</option>
<option value="summary">{% trans "Résumé" %}</option>
</select>
</div>
{% endfor %}
</div>
{% if form.record_type.errors %}
<span class="w3-text-red w3-small">{{ form.record_type.errors|join:", " }}</span>
{% endif %}
</div>
</div>
<!-- Ligne 3 : plage temporelle (optionnel) -->
<div class="w3-border-top w3-padding-top w3-margin-top">
<p class="w3-text-blue-grey">
@@ -150,36 +72,26 @@
</span>
</p>
<div class="w3-row-padding">
<div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-blue-grey">{{ form.start_dt.label }}</label>
{{ form.start_dt }}
{% if form.start_dt.errors %}
<span class="w3-text-red w3-small">{{ form.start_dt.errors|join:", " }}</span>
{% endif %}
<label class="w3-text-blue-grey">{% trans "Début (UTC)" %}</label>
<input type="datetime-local" class="datetime" name="start_dt">
</div>
<div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-blue-grey">{{ form.stop_dt.label }}</label>
{{ form.stop_dt }}
{% if form.stop_dt.errors %}
<span class="w3-text-red w3-small">{{ form.stop_dt.errors|join:", " }}</span>
{% endif %}
</div>
<label class="w3-text-blue-grey">{% trans "Fin (UTC)" %}</label>
<input type="datetime-local" class="datetime" name="stop_dt">
</div>
</div>
</div>
</div><!-- fin padding -->
</div><!-- fin card -->
<!-- Boutons -->
<div class="w3-row-padding w3-margin-top">
<div class="w3-col s12">
<button type="submit" class="w3-button w3-blue w3-round w3-large w3-padding-large">
<button type="submit" name="valid" class="w3-button w3-blue w3-large w3-padding-large" value="ok">
📥 {% trans "Générer et télécharger le CSV" %}
</button>
<a href="{% url 'planarian:experiment-list' %}"
<a href="/"
class="w3-button w3-light-grey w3-round w3-large w3-padding-large w3-margin-left">
✖ {% trans "Annuler" %}
</a>
@@ -187,10 +99,9 @@
</div>
</form>
<!-- Rappel des colonnes exportées -->
<div class="w3-card w3-round-large w3-margin-top">
<header class="w3-container w3-blue-grey w3-round-top-large">
<div class="w3-card w3-round-large w3-margin-top w3-border w3-round w3-round-large w3-margin-bottom">
<header class="w3-container w3-blue-grey w3-round w3-round-top-large">
<h4 class="w3-text-white" style="margin:8px 0;">
{% trans "Colonnes du fichier CSV exporté" %}
</h4>
@@ -223,9 +134,7 @@
</div>
</div>
</div>
</div><!-- fin container -->
<style>
input[type="text"],
input[type="number"],
@@ -245,10 +154,25 @@
outline: none;
background-color: #fff;
}
/* Masquer le radio natif, laisser le label stylisé */
.w3-button input[type="radio"] {
display: none;
}
</style>
{% else %}
<div class="w3-container w3-padding-64" style="max-width:760px; margin:auto;">
<h3 class="w3-panel w3-blue w3-round-xlarge w3-padding-64 w3-center"> {% trans "Choisir une session" %}</h3>
</div>
{% endif %}
{% endblock %}
@@ -1,55 +1,25 @@
{% extends "base.html" %}
{% extends "planarian/base.html" %}
{% load i18n %}
{% block export_csv %}{% endblock %}
{% block content %}
<div class="w3-container w3-padding-32" style="max-width:760px; margin:auto;">
<!-- En-tête -->
<div class="w3-panel w3-blue-grey w3-round-large w3-padding-16 w3-margin-bottom">
<div class="w3-row">
<div class="w3-col s12 m8 w3-bar-item">
<span class="w3-xlarge">
📂 {% trans "Importer des configurations depuis CSV" %}
</span>
</div>
<div class="w3-col s12 m4 w3-bar-item w3-right-align" style="padding-top:6px;">
<a href="{% url 'planarian:experiment-list' %}"
class="w3-button w3-white w3-round w3-text-blue-grey">
← {% trans "Retour à la liste" %}
</a>
</div>
</div>
</div>
<!-- Messages Django -->
{% for message in messages %}
<div class="w3-panel w3-round
{% if message.tags == 'success' %}w3-green
{% elif message.tags == 'error' %}w3-red
{% elif message.tags == 'warning' %}w3-orange
{% else %}w3-blue{% endif %}">
<p>{{ message }}</p>
</div>
{% endfor %}
{% if current_session and current_experiment %}
{% include "inc/alert.html" %}
<!-- Formulaire d'import -->
<form method="post" enctype="multipart/form-data" novalidate id="import-form">
{% csrf_token %}
<input type="hidden" id="_sid" name="_sid" value="{{ current_session.id }}">
<input type="hidden" id="_expid" name="_expid" value="{{ current_experiment.id }}">
{% if form.non_field_errors %}
<div class="w3-panel w3-red w3-round">
{% for error in form.non_field_errors %}
<p>⚠ {{ error }}</p>
{% endfor %}
</div>
{% endif %}
<div class="w3-card-4 w3-round-large w3-margin-bottom">
<header class="w3-container w3-blue-grey w3-round-top-large">
<h3 class="w3-text-white">{% trans "Fichier CSV à importer" %}</h3>
<div class="w3-card-4 w3-margin-bottom w3-border w3-round w3-round-large">
<header class="w3-container w3-blue-grey w3-round w3-round-top-large">
<h3 class="w3-text-white">{% trans "Fichier CSV à importer" %}: <span class="w3-large w3-text-lime">{{ current_experiment }}</span></h3>
</header>
<div class="w3-container w3-padding-24">
<p class="w3-light-blue w3-padding w3-border w3-round" style="margin:0 0 4px;">
{% trans "Colonnes obligatoires : well, px_per_mm, fps." %}<br>
{% trans "Toutes les autres colonnes sont optionnelles." %}
<!-- Zone de dépôt de fichier -->
<div id="drop-zone"
@@ -68,22 +38,12 @@
{% trans "ou cliquez pour sélectionner" %}
</span>
</p>
<!-- Input fichier caché -->
<input type="file" id="id_csv_file" name="csv_file"
accept=".csv,text/csv"
style="display:none;"
onchange="fileSelected(this)">
</div>
{% if form.csv_file.errors %}
<div class="w3-panel w3-red w3-round w3-margin-top">
{% for error in form.csv_file.errors %}
<p>⚠ {{ error }}</p>
{% endfor %}
</div>
{% endif %}
<!-- Aperçu du fichier sélectionné -->
<div id="file-info" class="w3-panel w3-pale-green w3-round w3-margin-top" style="display:none;">
<p id="file-name" class="w3-text-green"><b></b></p>
@@ -93,44 +53,37 @@
<!-- Option : écraser -->
<div class="w3-margin-top w3-padding-top w3-border-top">
<label class="w3-text-blue-grey" style="cursor:pointer; display:flex; align-items:center; gap:10px;">
{{ form.overwrite }}
<input type="checkbox" name="overwriteoverwrite" class="w3-check" value="1" />
<span>
<b>{{ form.overwrite.label }}</b><br>
<b>{% trans "Écraser les configurations existantes" %}</b><br>
<span class="w3-small w3-text-grey">
{% trans "Si décoché, les configurations déjà existantes (même experiment + well) seront ignorées." %}
</span>
</span>
</label>
{% if form.overwrite.errors %}
<span class="w3-text-red w3-small">{{ form.overwrite.errors|join:", " }}</span>
{% endif %}
</div>
</div>
</div>
</div>
<!-- Boutons -->
<div class="w3-row-padding w3-margin-bottom">
<div class="w3-col s12">
<button type="submit" id="submit-btn"
<button type="submit" id="submit-btn" name="valid" value="ok"
class="w3-button w3-blue-grey w3-round w3-large w3-padding-large"
disabled>
📂 {% trans "Importer" %}
</button>
<a href="{% url 'planarian:experiment-list' %}"
<a href="/"
class="w3-button w3-light-grey w3-round w3-large w3-padding-large w3-margin-left">
✖ {% trans "Annuler" %}
</a>
</div>
</div>
</form>
<!-- ============================================================
Format attendu du CSV
============================================================ -->
<div class="w3-card-4 w3-round-large">
<header class="w3-container w3-teal w3-round-top-large">
<div class="w3-card-4 w3-round-large w3-border w3-round w3-round-large">
<header class="w3-container w3-teal w3-round w3-round-top-large">
<h3 class="w3-text-white">{% trans "Format du fichier CSV" %}</h3>
</header>
<div class="w3-container w3-padding-24">
@@ -191,42 +144,30 @@
</thead>
<tbody>
<tr><td><code>well_radius_mm</code></td> <td>8.0</td> <td>{% trans "Rayon du puits (mm)" %}</td></tr>
<tr><td><code>thresh_immobile</code></td> <td>0.2</td> <td>{% trans "Seuil Immobile EthoVision (mm/s)" %}</td></tr>
<tr class="w3-grey"><td><code>thresh_immobile</code></td> <td>0.2</td> <td>{% trans "Seuil Immobile EthoVision (mm/s)" %}</td></tr>
<tr><td><code>thresh_mobile</code></td> <td>1.5</td> <td>{% trans "Seuil Mobile EthoVision (mm/s)" %}</td></tr>
<tr><td><code>tube_axis</code></td> <td>vertical</td> <td>{% trans "Axe du tube : vertical | horizontal" %}</td></tr>
<tr class="w3-grey"><td><code>tube_axis</code></td> <td>vertical</td> <td>{% trans "Axe du tube : vertical | horizontal" %}</td></tr>
<tr><td><code>min_area_px</code></td> <td>20</td> <td>{% trans "Surface min de détection (px²)" %}</td></tr>
<tr><td><code>planarian_count</code></td> <td>1</td> <td>{% trans "Nombre de planaires par puits" %}</td></tr>
<tr class="w3-grey"><td><code>planarian_count</code></td> <td>1</td> <td>{% trans "Nombre de planaires par puits" %}</td></tr>
<tr><td><code>photo_mode</code></td> <td>none</td> <td>{% trans "Phototactisme : none | fixed | sine | radial" %}</td></tr>
<tr><td><code>photo_strength</code></td> <td>0.0</td> <td>{% trans "Intensité phototactisme (0-1)" %}</td></tr>
<tr class="w3-grey"><td><code>photo_strength</code></td> <td>0.0</td> <td>{% trans "Intensité phototactisme (0-1)" %}</td></tr>
<tr><td><code>chemo_strength</code></td> <td>0.0</td> <td>{% trans "Intensité chimiotactisme (0-1)" %}</td></tr>
<tr><td><code>chemo_radius_mm</code></td> <td>2.0</td> <td>{% trans "Rayon zone nourriture (mm)" %}</td></tr>
<tr class="w3-grey"><td><code>chemo_radius_mm</code></td> <td>2.0</td> <td>{% trans "Rayon zone nourriture (mm)" %}</td></tr>
<tr><td><code>avoid_radius_mm</code></td> <td>3.0</td> <td>{% trans "Rayon évitement inter-individus (mm)" %}</td></tr>
<tr><td><code>aggreg_radius_mm</code></td> <td>6.0</td> <td>{% trans "Rayon agrégation inter-individus (mm)" %}</td></tr>
<tr class="w3-grey"><td><code>aggreg_radius_mm</code></td> <td>6.0</td> <td>{% trans "Rayon agrégation inter-individus (mm)" %}</td></tr>
</tbody>
</table>
</div>
<!-- Exemple de fichier -->
<p><b>{% trans "Exemple minimal" %}</b></p>
<div class="w3-code w3-round" style="font-size:12px; overflow-x:auto;">
<div class="w3-code w3-round w3-text-grey" style="font-size:12px; overflow-x:auto;">
experiment,well,px_per_mm,fps,thresh_immobile,thresh_mobile,photo_mode<br>
exp_ctrl_01,A1,26.25,10,0.2,1.5,none<br>
exp_ctrl_01,A2,26.25,10,0.2,1.5,none<br>
exp_light_01,B1,26.25,10,0.2,1.5,fixed<br>
exp_light_01,B2,26.25,10,0.2,1.5,fixed<br>
</div>
<!-- Téléchargement du template -->
<div class="w3-margin-top">
<a href="{% url 'planarian:experiment-list' %}?export_template=1"
class="w3-button w3-teal w3-round w3-small">
⬇ {% trans "Télécharger un template CSV vide" %}
</a>
<span class="w3-small w3-text-grey w3-margin-left">
{% trans "Ou exportez vos configurations existantes depuis l'admin Django." %}
</span>
</div>
</div>
</div>
@@ -322,5 +263,9 @@ exp_light_01,B2,26.25,10,0.2,1.5,fixed<br>
return (bytes / 1048576).toFixed(1) + ' MB';
}
</script>
{% else %}
<div class="w3-container w3-padding-64 w3-margin" style="max-width:760px; margin:auto;">
<h3 class="w3-panel w3-blue w3-round-xlarge w3-padding-64 w3-center"> {% trans "Choisir une session" %}<br>{% trans "Puis une expérience." %}</h3>
</div>
{% endif %}
{% endblock %}
+4 -8
View File
@@ -6,16 +6,12 @@ from planarian import views
app_name = "planarian"
urlpatterns = [
# Configurations expériences
path("experiments/", views.ExperimentConfigListView.as_view(), name="experiment-list"),
path("experiments/new/", views.ExperimentConfigFormView.as_view(), name="experiment-new"),
path("experiments/<int:pk>/",views.ExperimentConfigFormView.as_view(), name="experiment-edit"),
# Import / export
path("import/", views.ImportParamsView.as_view(), name="import-params"),
path("export/", views.ExportCsvView.as_view(), name="export-csv"),
path("import/csv/", views.import_csv_view, name="import-params"),
path("export/csv/", views.export_csv_view, name="export-csv"),
path("api/export/csv/", views.export_metrics, name="api-export-csv"),
# API JSON pour le front-end
path("api/tracking/", views.TrackingDataView.as_view(), name="tracking-data-api"),
]
+166 -105
View File
@@ -2,89 +2,156 @@
#import asyncio
import logging
import csv
import io
import json
from asgiref.sync import async_to_sync
from django.conf import settings
from django.contrib import messages
from django.http import HttpResponse, JsonResponse
from django.shortcuts import get_object_or_404, redirect #, render
from django.http import JsonResponse, FileResponse
from django.shortcuts import redirect
from django.utils.translation import gettext_lazy as _
from django.views.decorators.csrf import csrf_exempt
from django.shortcuts import render #, redirect
from django.views.decorators.http import require_GET
from django.contrib.auth.decorators import login_required
from django.views import View
from django.views.generic import FormView, ListView
from .forms import CsvImportForm, ExperimentConfigForm, ExportCsvForm
from .models import ExperimentConfig
from modules.planarian_metrics import ExperimentParams, ReductStoreClient
from modules.system_stats import get_cached_stats, start_background_updater
from scanner.constants import ScannerConstants
from .tasks import export_experiment_metrics_task, export_session_metrics_task
from .export_service import export_csv_sync
from scanner import models, views as scanner_views
from .models import ExperimentConfig
logger = logging.getLogger(__name__)
start_background_updater()
def is_staff_or_admin(user):
return user.is_staff or user.is_superuser
@require_GET
def stats_view(request):
"""
Retourne tout le cache (shm, cpu_info, memory_info, disk_info, updated_at)
"""
try:
data = get_cached_stats()
return JsonResponse(data, safe=False)
except Exception as e:
return JsonResponse({"error": str(e)}, status=500)
def _get_reduct_client() -> ReductStoreClient:
"""Instancie le client ReductStore depuis les settings Django."""
return ReductStoreClient(
url = getattr(settings, "REDUCTSTORE_URL", "http://localhost:8383"),
token = getattr(settings, "REDUCTSTORE_TOKEN", ""),
bucket = getattr(settings, "REDUCTSTORE_BUCKET", "planarian_metrics"),
return ReductStoreClient(url=settings.REDUCTSTORE_URL, token=settings.REDUCTSTORE_TOKEN)
def global_context(request, **ctx):
conf = ScannerConstants().get()
return dict(
app_title=settings.APP_TITLE,
app_sub_title=settings.APP_SUB_TITLE,
domain_server=settings.DOMAIN_SERVER,
local_ip_server=settings.LOCAL_IP_SERVER,
host_port=settings.SERVER_HOST_PORT,
export_csv_destination=settings.CSV_EXPORT_DIR,
conf=conf,
**ctx
)
# ---------------------------------------------------------------------------
# Vue : liste des configurations
# ---------------------------------------------------------------------------
class ExperimentConfigListView(ListView):
"""Liste toutes les configurations expériences."""
model = ExperimentConfig
template_name = "planarian/experiment_list.html"
context_object_name = "configs"
ordering = ["-created_at"]
def get_active_session(request, session_id=None, experiment_id=None):
cursid = session_id or request.POST.get('_sid')
expid = experiment_id or request.POST.get('_expid')
current_session = models.Session.get_session(cursid)
experiments, current_experiment = scanner_views.get_not_active_experiments(current_session, expid)
context = dict(
current_session = current_session,
current_experiment = current_experiment,
experiments=experiments or [],
sessions=models.Session.objects.filter(active=False).all(),
well_choices=models.Well.objects.order_by('name').all(),
)
return context
# ---------------------------------------------------------------------------
# Vue : création / modification d'une configuration
# Vue :Export CSV depuis ReductStore
# ---------------------------------------------------------------------------
@login_required
@csrf_exempt
def export_metrics(request):
data = json.loads(request.body.decode() or "{}")
action = data.get("action")
pid = data.get("pid")
if action=='experiment_csv':
experiment = models.Experiment.objects.filter(pk=pid).first()
if experiment:
export_experiment_metrics_task.delay(experiment.id) # @UndefinedVariable
return JsonResponse({"success": True, "msg": str(_("Métrics en cours de téléchargement"))})
if action=='session_csv':
if pid:
export_session_metrics_task(pid) # @UndefinedVariable
return JsonResponse({"success": True, "msg": str(_("Métrics en cours de téléchargement"))})
return JsonResponse({"success": False, "msg": str(_("Erreur: les métrics non pas été téléchargés"))})
class ExperimentConfigFormView(FormView):
"""Formulaire de saisie des paramètres d'une expérience."""
template_name = "planarian/experiment_form.html"
form_class = ExperimentConfigForm
@login_required
def export_csv_view(request):
session_context = get_active_session(request)
ctx = {
'choice_title': _("Export vers un fichier CSV depuis ReductStore"),
'well': 'A1',
'planarian': "0",
'record_type': 'frame',
**session_context
}
if request.method == 'POST':
valid = request.POST.get('valid')
session = session_context['current_session']
experiment = session_context['current_experiment']
if valid == 'ok' and session and experiment:
well_name = request.POST.get('well')
uuid = models.get_uuid_from_session(session.id, experiment.multiwell.position, well_name)
'''
csv_content, filename = export_csv(request, uuid)
if csv_content:
response = FileResponse(csv_content, content_type="text/csv; charset=utf-8")
response["Content-Disposition"] = f'attachment; filename="{filename}"'
return response'''
csv_content, n = export_csv_sync(
experiment=experiment.identifier,
well=well_name,
uuid=uuid,
planarian=request.POST.get("planarian"),
record_type=request.POST.get("record_type"),
start=request.POST.get("start_dt"),
stop=request.POST.get("stop_dt"),
)
if csv_content:
filename = (
f"{experiment.identifier}_{well_name}-{request.POST.get('planarian')}_"
f"{request.POST.get('record_type')}.csv"
)
logger.info(f"Export CSV: {n} lignes, content size={len(csv_content)}")
response = FileResponse(csv_content, content_type="text/csv; charset=utf-8")
response["Content-Disposition"] = (f'attachment; filename="{filename}"')
return response
def get_form(self, form_class=None):
pk = self.kwargs.get("pk")
if pk:
instance = get_object_or_404(ExperimentConfig, pk=pk)
return ExperimentConfigForm(self.request.POST or None, instance=instance)
return ExperimentConfigForm(self.request.POST or None)
def form_valid(self, form):
form.save()
messages.success(self.request, _("Configuration sauvegardée."))
return redirect("planarian:experiment-list")
messages.warning(request, _("Aucune donnée trouvée."))
return render(request, "planarian/export_csv.html", context=global_context(request, **ctx))
# ---------------------------------------------------------------------------
# Vue : import CSV de paramètres
# ---------------------------------------------------------------------------
class ImportParamsView(FormView):
"""
Import de configurations d'expérience depuis un fichier CSV.
Une ligne CSV = un puits = un ExperimentConfig.
Colonnes CSV obligatoires : experiment, well, px_per_mm, fps
Toutes les autres colonnes correspondent aux champs du modèle.
"""
template_name = "planarian/import_params.html"
form_class = CsvImportForm
def form_valid(self, form):
rows = form.csv_rows
overwrite = form.cleaned_data["overwrite"]
def import_csv(request, current_experiment, rows, overwrite):
created = 0
updated = 0
errors = 0
@@ -95,13 +162,13 @@ class ImportParamsView(FormView):
d = params.to_dict()
obj, is_new = ExperimentConfig.objects.get_or_create(
experiment = d["experiment"],
well = d["well"],
experiment = current_experiment.identifier,
well = d.get("well"),
)
if is_new or overwrite:
for k, v in d.items():
if k not in ("experiment", "well") and hasattr(obj, k):
if k not in ["well", "experiment", "author", "experiment_key", "active"] and hasattr(obj, k):
setattr(obj, k, v)
obj.save()
if is_new:
@@ -112,68 +179,58 @@ class ImportParamsView(FormView):
except Exception as e:
logger.warning(f"Ligne ignorée ({row}): {e}")
errors += 1
messages.success(
self.request,
request,
_("Import terminé : %(c)d créés, %(u)d mis à jour, %(e)d erreurs.")
% {"c": created, "u": updated, "e": errors},
)
return redirect("planarian:experiment-list")
return redirect("redirect_to_mainboard")
# ---------------------------------------------------------------------------
# Vue : export CSV depuis ReductStore
# ---------------------------------------------------------------------------
class ExportCsvView(FormView):
@login_required
def import_csv_view(request):
"""
Export des données de tracking depuis ReductStore vers un fichier CSV.
Retourne le fichier en téléchargement HTTP.
Import de configurations d'expérience depuis un fichier CSV.
Une ligne CSV = un puits = un ExperimentConfig.
Colonnes CSV obligatoires: well, px_per_mm, fps
Toutes les autres colonnes correspondent aux champs du modèle.
"""
session_context = get_active_session(request)
if request.method == 'POST':
valid = request.POST.get('valid')
current_experiment = session_context.get('current_experiment')
template_name = "planarian/export_csv.html"
form_class = ExportCsvForm
def form_valid(self, form):
d = form.cleaned_data
@async_to_sync
async def _do_export():
client = _get_reduct_client()
await client.connect()
if valid == 'ok' and current_experiment:
try:
csv_content, n = await client.export_csv_response(
experiment = d["experiment"],
well = d["well"],
planarian = d["planarian"],
record_type = d["record_type"],
start = d.get("start_dt"),
stop = d.get("stop_dt"),
)
finally:
await client.close()
return csv_content, n
f = request.FILES.get('csv_file')
overwrite = request.POST.get("overwrite")
try:
content = f.read().decode("utf-8-sig")
reader = csv.DictReader(io.StringIO(content))
rows = list(reader)
except Exception as e:
msg = f'Fichier CSV invalide : {e}'
raise Exception(msg)
csv_content, n = _do_export()
if not csv_content:
messages.warning(self.request, _("Aucune donnée trouvée."))
return self.form_invalid(form)
filename = (
f"{d['experiment']}_{d['well']}_planaire{d['planarian']}"
f"_{d['record_type']}.csv"
)
response = HttpResponse(csv_content, content_type="text/csv; charset=utf-8")
response["Content-Disposition"] = f'attachment; filename="{filename}"'
messages.success(self.request, _("%(n)d lignes exportées.") % {"n": n})
return response
required = {"well", "px_per_mm", "fps"}
if rows:
missing = required - set(rows[0].keys())
if missing:
msg = _("Colonnes manquantes : %(cols)s") % {"cols": ", ".join(missing)}
raise Exception(msg)
return import_csv(request, current_experiment, rows, overwrite)
except Exception as e:
messages.error(request, msg)
logger.error(msg)
ctx = { 'choice_title': _("Importer des configurations depuis un fichier CSV"), **session_context }
return render(request, "planarian/import_params.html", context=global_context(request, **ctx))
# ---------------------------------------------------------------------------
# Vue API JSON : données de tracking (pour polling front-end)
# ---------------------------------------------------------------------------
class TrackingDataView(View):
"""
API JSON retournant les métriques de tracking d'un planaire.
@@ -202,9 +259,13 @@ class TrackingDataView(View):
planarian = planarian,
record_type = record_type,
)
finally:
await client.close()
except Exception as e:
logger.error(f"Erreur fetching tracking data: {e}")
records = _fetch()
return JsonResponse({"count": len(records), "records": records})
def get_context_data(self, **kwargs):
context = super().get_context_data(**kwargs)
return global_context(self.request, choice_title=str(_("Métriques de tracking d'un planaire")), **context)
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+5
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@@ -0,0 +1,5 @@
#!/bin/bash
echo "==== Starting server development in debug mode port 8000 ..."
echo "===="
../.venv/bin/python manage.py runserver 0.0.0.0:8000
+58 -8
View File
@@ -1,8 +1,8 @@
from django.utils.translation import gettext_lazy as _
from django.contrib import admin
from django.db.models import Q
from . import models
class WellAdmin(admin.ModelAdmin):
model = models.Well
list_display = ('name', 'author',)
@@ -10,24 +10,74 @@ class WellAdmin(admin.ModelAdmin):
class ConfigurationAdmin(admin.ModelAdmin):
list_display = ('name', 'author', 'capture_type', 'video_width_capture', 'video_height_capture', 'video_frame_rate', 'active',)
fieldsets = (
(_("Identification"), {
"fields": ("name", "author", "active"),
}),
(_("Dashboard"), {
"fields": ("sidebar_width", "default_grid_columns",),"classes": ("collapse",),
}),
(_("opencv"), {
"fields": ("opencv_fourcc_format", "opencv_video_type"),"classes": ("collapse",),
}),
(_("Grbl"), {
"fields": ("grbl_xmax", "grbl_ymax"),
"classes": ("collapse",),
}),
(_("Camera"), {
"fields": ("scan_simulation", "capture_type", "webcam_device_index", "image_quality", "video_jpeg_quality", "video_frame_rate", "video_width_capture", "video_height_capture"),
"classes": ("collapse",),
}),
(_("Calibration / Balayage"), {
"fields": ("tube_axis", "calibration_crop_radius", "calibration_default_multiwell", "calibration_default_feed", "calibration_default_step", "calibration_default_duration"),
"classes": ("collapse",),
}),
(_("Tracking: valeurs par défaut"), {
"fields": ("tracking", "tracking_setting", "min_area_px", "max_area_ratio", "max_planarians", "merge_kernel_size", "min_contour_dist_px"),
"classes": ("collapse",),
}),
)
class MultiWellAdmin(admin.ModelAdmin):
list_filter = ('author', )
list_display = ('label', 'position', 'author', 'order', 'xbase', 'ybase', 'duration', 'feed', 'default', 'well_position', 'active',)
fieldsets = (
(_("Identification"), {
"fields": ("label", "author", "position", "default", "active"),
}),
(_("Géométrie"), {
"fields": ("cols", "rows", "diameter", "row_def", "row_order"),"classes": ("collapse",),
}),
(_("Déplacement"), {
"fields": ("order", "duration", "xbase", "ybase", "dx", "dy", "feed"),"classes": ("collapse",),
}),
(_("Positions générées"), {
"fields": ("well_position",),
}),
)
class WellPositionAdmin(admin.ModelAdmin):
list_filter = ('author', 'multiwell')
list_display = ('multiwell__position', 'well__name', 'order', 'x', 'y', 'px_per_mm', 'author',)
#class ExperimentConfigInline(admin.TabularInline):
# model = models.ExperimentConfig
# extra = 0
class ExperimentWellInline(admin.TabularInline):
model = models.ExperimentWell
extra = 0
#ordering = ('experiment__multiwell__wellposition__order',)
class ExperimentAdmin(admin.ModelAdmin):
#inlines = (ExperimenConfigInline,)
inlines = (ExperimentWellInline, )
list_filter = ('session_experiments__session', 'author', )
list_display = ('title', 'author', 'multiwell', 'created', 'started', 'finished')
readonly_fields = ('created', 'started', 'finished', )
list_display = ('title', 'author', 'identifier', 'duration', 'multiwell', 'created', 'started', 'finished')
readonly_fields = ('created', 'identifier', 'started', 'finished', )
class SessionExperimentInlineAdmin(admin.TabularInline):
model = models.SessionExperiment
@@ -51,7 +101,7 @@ class SessionExperimentInlineAdmin(admin.TabularInline):
class SessionAdmin(admin.ModelAdmin):
list_filter = ('author',)
inlines = (SessionExperimentInlineAdmin, )
list_display = ('name', 'author', 'created', 'finished', 'active', 'expected_export', 'expected_scanning', )
list_display = ('name', 'id', 'author', 'created', 'finished', 'active', 'expected_export', 'expected_scanning', )
readonly_fields = (
'created',
'finished',
+8
View File
@@ -22,12 +22,20 @@ class DefaultConfig:
video_frame_rate: int = 5.0
video_width_capture: int = 2028
video_height_capture: int = 1520
scan_simulation: bool = False
calibration_crop_radius: int = 500
calibration_default_multiwell: str = 'HD'
calibration_default_feed: int = 1000
calibration_default_step: float = 1.0
calibration_default_duration: float = 3.0
tracking: bool = False
tracking_setting: bool = False
tube_axis: str = 'vertical'
min_area_px: int = 20
max_area_ratio: float = 0.10
max_planarians: int = 1
merge_kernel_size: int = 15
min_contour_dist_px: int = 40
class ScannerConstants:
-3
View File
@@ -33,9 +33,6 @@ class ScannerConsumer(AsyncWebsocketConsumer):
if msg_type in ["scanner", "calibrate"]:
redisDB.publish(self.this_group, json.dumps(data))
async def replay_message(self, event):
await self.send(text_data=json.dumps(event["text"]))
class ReplayConsumer(AsyncWebsocketConsumer):
+27 -42
View File
@@ -7,7 +7,7 @@ import posix_ipc
import mmap
import cv2
import numpy as np
from django.http import JsonResponse, HttpResponse
#from django.http import JsonResponse, HttpResponse
from django.conf import settings
from reduct.time import unix_timestamp_to_iso
@@ -38,12 +38,7 @@ async def remove_video_by_uuid(uuid, start_ts=None, end_ts=None, when=None):
async def remove_video(uuid, start_ts, end_ts, when=None):
try:
await remove_video_by_uuid(uuid, start_ts, end_ts, when=when)
return JsonResponse({'state': 'ok'}, status=200)
except Exception as e:
return JsonResponse({'error': str(e)}, status=500)
async def shm_download_video(uuid, start_ts, end_ts, frame_rate=5, opencv_fourcc_format='mp4v', opencv_video_type='mp4'):
try:
@@ -79,7 +74,8 @@ async def shm_download_video(uuid, start_ts, end_ts, frame_rate=5, opencv_fourcc
total += 1
if not frame_sizes:
return JsonResponse({'error': 'Aucune frame trouvée'}, status=404)
raise Exception("No frame found!")
#return JsonResponse({'error': 'Aucune frame trouvée'}, status=404)
video_path = os.path.join(settings.MEDIA_ROOT, f"output.{opencv_video_type}")
fourcc = cv2.VideoWriter_fourcc(* opencv_fourcc_format)
@@ -97,36 +93,16 @@ async def shm_download_video(uuid, start_ts, end_ts, frame_rate=5, opencv_fourcc
video.write(frame)
current_offset += size
progress_bar(i + 1, total, prefix=f'Progression {uuid}:', suffix='Terminé', length=30)
progress_bar(i + 1, total, prefix=f'Progress {uuid}:', suffix='Ended', length=30)
i+=1
video.release()
# Nettoie la mémoire partagée
shm.unlink()
# Vérifier que le fichier existe
if not os.path.exists(video_path):
logger.error(f"Fichier non créé: {video_path}")
return JsonResponse({'error': 'Erreur création vidéo'}, status=500)
# Lit le fichier vidéo généré
with open(video_path, 'rb') as f:
video_bytes = f.read()
# Retourne la vidéo en réponse
response = HttpResponse(video_bytes, content_type='video/mp4')
response['Content-Disposition'] = f'attachment; filename="{video_path}"'
response['Content-Length'] = os.path.getsize(video_path)
# Supprime le fichier temporaire
os.remove(video_path)
return response
return { "status": 404, "success": True, "video_path": video_path}
except Exception as e:
logger.error(f"shm_download_video: {e}")
return JsonResponse({'error': str(e)}, status=500)
return {"status": 500, "success": False, "video_path": video_path, "error": str(e)}
# ─────────────────────────────────────────────
##
@@ -145,6 +121,10 @@ def _copy_to_destinations(source_path: str, filename: str) -> dict:
"""
results = {"local": None, "remote": None}
filename = filename.replace(':', '_')
logger.info("%s %s", source_path, filename)
for dest in settings.EXPORT_DESTINATIONS:
if dest == "local":
@@ -152,9 +132,9 @@ def _copy_to_destinations(source_path: str, filename: str) -> dict:
results["local"] = source_path
elif dest == "remote":
remote_path = os.path.join(settings.EXPORT_REMOTE_DIR, filename)
remote_path = os.path.join(settings.EXPORT_REMOTE_PATH, filename)
try:
if not remote_mount_available(settings.EXPORT_REMOTE_DIR):
if not remote_mount_available(settings.EXPORT_REMOTE_PATH):
logger.warning("Partage Samba non disponible, copie ignorée")
results["remote_error"] = "Montage indisponible"
continue
@@ -243,11 +223,12 @@ async def export_images_zip(
total += 1
if not frame_sizes:
return {"status": "error", "message": "Aucune frame trouvée"}
return {"status": "error", "message": "No frame found!..."}
# --- Génération du ZIP ---
max_zip_bytes = max_zip_size_mb * 1024 * 1024 if max_zip_size_mb > 0 else 0
ts_s = unix_timestamp_to_iso(start_ts)
zip_filename = f"{uuid}_{ts_s}.zip"
zip_path = os.path.join(settings.EXPORTS_LOCAL_PATH, 'images', zip_filename)
os.makedirs(os.path.dirname(zip_path), exist_ok=True)
@@ -292,19 +273,21 @@ async def export_images_zip(
zf.writestr(f"{uuid}_{ts_iso}.jpg", buf.tobytes())
written += 1
progress_bar(i + 1, total, prefix=f'Progression {uuid}:', suffix='Terminé', length=30)
progress_bar(i + 1, total, prefix=f'Progress {uuid}:', suffix='Ended', length=30)
i+=1
current_offset += size
## Copie vers les destinations (local + Samba)
#destinations = _copy_to_destinations(zip_path, zip_filename)
filename = os.path.join('images', zip_filename)
destinations = _copy_to_destinations(zip_path, filename)
return {
"status": "success",
"zip_path": zip_path,
"frames_written": written,
"frames_skipped": skipped,
"jpeg_quality": jpeg_quality,
#"destinations": destinations,
"destinations": destinations,
}
except Exception as exc:
@@ -395,7 +378,7 @@ async def export_video_mp4(
total +=1
if not frame_sizes:
return {"status": "error", "message": "Aucune frame trouvée"}
return {"status": "error", "message": "No frame found!..."}
# --- Génération du MP4 ---
@@ -451,18 +434,20 @@ async def export_video_mp4(
written += 1
current_offset += size
progress_bar(i + 1, total, prefix=f'Progression {uuid}:', suffix='Terminé', length=30)
progress_bar(i + 1, total, prefix=f'Progress {uuid}:', suffix='Ended', length=30)
i+=1
if video:
video.release()
if not os.path.exists(video_path):
return {"status": "error", "message": f"Fichier {opencv_video_type} non créé"}
return {"status": "error", "message": f"File {opencv_video_type} not created!..."}
## Copie vers les destinations (local + Samba)
#filename = os.path.basename(video_path)
#destinations = _copy_to_destinations(video_path, filename)
filename = os.path.basename(video_path)
filename = os.path.join('videos', filename)
destinations = _copy_to_destinations(video_path, filename)
return {
"status": "success",
"video_path": video_path,
@@ -470,7 +455,7 @@ async def export_video_mp4(
"frames_skipped": skipped,
"frame_rate": frame_rate,
"file_size_mb": round(os.path.getsize(video_path) / 1024 / 1024, 2),
#"destinations": destinations,
"destinations": destinations,
}
except Exception as exc:
+126 -32
View File
@@ -7,7 +7,6 @@ import json
from django_celery_beat.models import PeriodicTask, ClockedSchedule
from django.dispatch import receiver
from django.db.models.signals import post_save, post_delete
from django.utils import timezone
from django.db import models
from django.contrib.auth.models import User
@@ -18,8 +17,6 @@ MULTIWELL_POSITION = [
('HD', _("HD-Haut droit")),
('BG', _("BG-Bas gauche")),
('BD', _("BD-Bas droit")),
('BM', _("BM-Bas milieu")),
('HM', _("HM-Haut milieu")),
]
FOURCC_FORMAT = [
@@ -35,12 +32,17 @@ VIDEO_TYPE = [
CAPTURE_TYPE = [
('rpi', _("Arducam")),
('webcam', _("Webcam")),
('file', _("mp4")),
('file', _("Fichier vidéo (mp4, avi)")),
]
TUBE_AXIS_TYPE = [
('vertical', _("Vertical")),
('horizontal', _("Horizontal")),
]
class Configuration(models.Model):
name = models.CharField(_("Nom de la Configuration"), help_text=_("Nom de la configuration"), max_length=100, null=True, blank=False, default=_("Configuration par défaut"))
author = models.ForeignKey(User, on_delete=models.CASCADE, verbose_name="Auteur", null=True, blank=True)
author = models.ForeignKey(User, on_delete=models.SET_NULL, verbose_name="Auteur", null=True, blank=True)
# Dashboard configuration
sidebar_width = models.CharField(_("Barre latérale"), help_text=_("Largeur barre latérale (css)"), max_length=32, null=True, blank=False, default="350px")
default_grid_columns = models.PositiveSmallIntegerField(_("Colonnes de la grille par défaut"), help_text=_("Nombre de colonnes de la grille par défaut"), blank=False, default=3)
@@ -51,7 +53,8 @@ class Configuration(models.Model):
grbl_xmax = models.FloatField(_("Grbl Xmax"), help_text=_("CNC Grbl Xmax en mm"), blank=False, default=350.0)
grbl_ymax = models.FloatField(_("Grbl Ymax"), help_text=_("CNC Grbl Ymax en mm"), blank=False, default=250.0)
# camera configuration
capture_type = models.CharField(_("Capture"), help_text=_("Type de capture"), default='rpi', max_length=8, choices=CAPTURE_TYPE, null=True, blank=False)
capture_type = models.CharField(_("Capture"), help_text=_("Type de capture. Nécessite un redémarrage en cas de modification à chaud!"), default='rpi', max_length=8, choices=CAPTURE_TYPE, null=True, blank=False)
webcam_device_index = models.PositiveSmallIntegerField(_("Index de la webcam"), help_text=_("Index de la webcam (0, 1, ...) si présente"), default=2)
image_quality = models.PositiveSmallIntegerField(_("Qualité JPEG"), help_text=_("Qualité JPEG (1-100) pour les images exportées"), default=90)
video_jpeg_quality = models.PositiveSmallIntegerField(_("Qualité JPEG pour les vidéos"), help_text=_("Qualité JPEG (1-100) pour les images extraites des vidéos"), default=90)
@@ -59,6 +62,7 @@ class Configuration(models.Model):
video_width_capture = models.PositiveSmallIntegerField(_("Largeur de capture vidéo"), help_text=_("Largeur de capture vidéo en pixels"), default=1280)
video_height_capture = models.PositiveSmallIntegerField(_("Hauteur de capture vidéo"), help_text=_("Hauteur de capture vidéo en pixels"), default=720)
# Calibration
scan_simulation = models.BooleanField(_("Simuler balayage"), help_text=_("Autorise la simulation du balayage"), default=False)
calibration_crop_radius = models.PositiveSmallIntegerField(_("Rayon de découpe pour la calibration"), help_text=_("Rayon en pixels pour découper les images de calibration en px"), default=150)
calibration_default_multiwell = models.CharField(_("Multi-puits de calibration par défaut"), help_text=_("Position du multi-puits de calibration par défaut"), max_length=8, choices=MULTIWELL_POSITION, default='HG')
calibration_default_feed = models.PositiveIntegerField(_("Vitesse de calibration"), help_text=_("Vitesse de déplacement pour la calibration en mm/mn"), default=1000)
@@ -66,6 +70,14 @@ class Configuration(models.Model):
calibration_default_duration = models.FloatField(_("Duruée calibration"), help_text=_("Durée de pose entre chaque puits en s"), default=3.0)
# tracking
tracking = models.BooleanField(_("Suivi"), help_text=_("Suivi et analyse des planaires"), default=False)
tracking_setting = models.BooleanField(_("Réglage dans calibration"), help_text=_("Autorise le réglage des valeurs par défaut dans la calibration"), default=False)
tube_axis = models.CharField(_("Axe du puit"), help_text=_("Axe du tube"), default='vertical', max_length=16, choices=TUBE_AXIS_TYPE, null=True, blank=False)
min_area_px = models.PositiveIntegerField(_("Surface minimale"), help_text=_("surface minimale d'un contour pour être considéré valide (px²)"), default=20)
max_area_ratio = models.FloatField(_("surface maximale "), help_text=_("surface maximale d'un contour en fraction de la frame (défaut 10%)"), default=0.10)
max_planarians = models.PositiveIntegerField(_("Max planaire"), help_text=_("nombre maximum de planaires à suivre simultanément (1-10)"), default=1)
merge_kernel_size = models.PositiveIntegerField(_("Taille du kernel"), help_text=_("taille du kernel elliptique de fusion des fragments (px). Augmenter si fragments résiduels"), default=15)
min_contour_dist_px = models.PositiveIntegerField(_("Distance <contour>"), help_text=_("Distance min entre deux contours pour les considérer comme individus distincts. Défaut : 40px. Augmenter si IDs multiples persistent"), default=40)
#
active = models.BooleanField(_("Actif"), default=False)
@@ -83,7 +95,7 @@ class Configuration(models.Model):
return f'{self.name}'
class Well(models.Model):
author = models.ForeignKey(User, on_delete=models.CASCADE, verbose_name="Auteur", null=True, blank=True)
author = models.ForeignKey(User, on_delete=models.SET_NULL, verbose_name="Auteur", null=True, blank=True)
name = models.CharField(_("Nom"), help_text=_("Nom du puit: Ai..Di"), unique=True, max_length=4, null=True, blank=True)
class Meta:
@@ -97,20 +109,20 @@ class Well(models.Model):
class MultiWell(models.Model):
# Identification
label = models.CharField(_("Label"), help_text=_("Label du multi-puit"), max_length=100, null=True, blank=True)
author = models.ForeignKey(User, on_delete=models.CASCADE, verbose_name="Auteur", null=True, blank=True)
author = models.ForeignKey(User, on_delete=models.SET_NULL, verbose_name="Auteur", null=True, blank=True)
position = models.CharField(_("Position"), help_text=_('Position du multi-puits sur la table'), unique=True, max_length=8, choices=MULTIWELL_POSITION, null=True, blank=False)
default = models.BooleanField(_("Par défaut"), help_text=_('Multi-puit par défaut'), default=False)
# Configuration
cols = models.PositiveSmallIntegerField(_("Colonnes"), help_text=_('Nombre de colonnes'), blank=False, default=6)
rows = models.PositiveSmallIntegerField(_("Lignes"), help_text=_('Nombre de lignes'), blank=False, default=4)
diameter = models.FloatField(_("Diamètre"), help_text=_('Diamètre des tubes en mm'), blank=False, default=16.0)
row_def = models.CharField(_("Définition"), help_text=_('Définition des lignes'), max_length=16, null=True, blank=False, default="A,B,C,D")
row_order = models.CharField(_("Ordre ligne"), help_text=_('Ordre ligne de puit. Lecture en serpentin dans le sens des +- X'), max_length=16, null=True, blank=False, default="D,C,B,A")
# Balayage
order = models.PositiveSmallIntegerField(_("Ordre"), help_text=_('Ordre de lecture du multi-puit'), blank=False, default=0)
duration = models.PositiveIntegerField(_("Durée"), help_text=_('Durée du film en secondes'), blank=False, default=120)
duration = models.PositiveIntegerField(_("Durée"), help_text=_('Durée de capture en secondes pour la calibration'), blank=False, default=10)
xbase = models.FloatField(_("Origine X"), help_text=_('Base origine X en mm'), blank=False, default=50.0)
ybase = models.FloatField(_("Origine Y"), help_text=_('Base origine Y en mm'), blank=False, default=50.0)
@@ -164,7 +176,7 @@ class MultiWell(models.Model):
class WellPosition(models.Model):
author = models.ForeignKey(User, on_delete=models.CASCADE, verbose_name="Auteur", null=True, blank=True)
author = models.ForeignKey(User, on_delete=models.SET_NULL, verbose_name="Auteur", null=True, blank=True)
well = models.ForeignKey(Well, verbose_name=_("Puit"), on_delete=models.SET_NULL, null=True, blank=True)
multiwell = models.ForeignKey(MultiWell, verbose_name=_("Multi-puits"), on_delete=models.SET_NULL, null=True, blank=True)
@@ -175,13 +187,17 @@ class WellPosition(models.Model):
@classmethod
def active_well(cls, multiwel, well):
return WellPosition.objects.filter(multiwel_id=multiwel.id, well_id=well.id).first()
def active_well(cls, multiwell, well):
return WellPosition.objects.filter(multiwell_id=multiwell.id, well_id=well.id).first()
@classmethod
def well_by_multiwell(cls, multiwell):
return WellPosition.objects.filter(multiwell_id=multiwell.id).all()
class Meta:
ordering = ['order']
unique_together = ["multiwell", "well"]
verbose_name = _("Position d'un puit")
verbose_name = _("Position du puit")
verbose_name_plural = _("Position des puits")
def __str__(self):
@@ -222,19 +238,33 @@ def create_well_position(sender, instance, created, **kwargs):
class Experiment(models.Model):
title = models.CharField(_("Titre de l'expérience"), max_length=100, null=True, blank=False)
comment = models.TextField(_("Commentaires"), help_text=_("Descriptions de l'expérience"), null=True, blank=True)
author = models.ForeignKey(User, on_delete=models.CASCADE, verbose_name="Auteur", null=True, blank=True)
identifier = models.CharField(_("Identifiant d'expérience"), unique=True, max_length=100, null=True, blank=False )
author = models.ForeignKey(User, on_delete=models.SET_NULL, verbose_name="Auteur", null=True, blank=True)
multiwell = models.ForeignKey(MultiWell, verbose_name=_("Multi-puits"), on_delete=models.SET_NULL, null=True, blank=True)
duration = models.PositiveIntegerField(_("Durée"), help_text=_('Durée de la prise de vue en secondes'), blank=False, default=120)
created = models.DateTimeField(_("Date de création"), default=timezone.now)
started = models.DateTimeField (_("Date de début"), null=True, blank=True)
finished = models.DateTimeField (_("Date de fin"), null=True, blank=True)
def save(self, *args, **kwargs):
self.identifier = f'{self.multiwell.position}_{self.created.isoformat()[:19]}'
super().save(*args, **kwargs)
@classmethod
def by_identifier(cls, identifier):
return Experiment.objects.filter(identifier__exact=identifier).first()
class Meta:
ordering = ['-created', ]
verbose_name = _("Expérience")
verbose_name_plural = _("Expériences")
def __str__(self):
return f'{self.title}: {self.created} {self.multiwell.order}'
return f'{self.identifier} [ {self.title} ]'
class Session(models.Model):
@@ -246,10 +276,10 @@ class Session(models.Model):
ERROR = "error", _("Erreur")
name = models.CharField(_("Nom de la session"), help_text=_("Session d'expérience. 4 Multi-puits maximum"), max_length=100, null=True, blank=False)
author = models.ForeignKey(User, on_delete=models.CASCADE, verbose_name="Auteur", null=True, blank=True)
author = models.ForeignKey(User, on_delete=models.SET_NULL, verbose_name="Auteur", null=True, blank=True)
active = models.BooleanField(_("Active"), default=True)
expected_export = models.DateTimeField(_("Date d'exportation"), help_text=_("Date d'exportation prévue"), null=True, blank=True)
expected_scanning = models.DateTimeField(_("Date du balayage"), help_text=_("Date du balayage prévue"), null=True, blank=True)
expected_export = models.DateTimeField(_("Exportation auto"), help_text=_("Date d'exportation prévue"), null=True, blank=True)
expected_scanning = models.DateTimeField(_("Bbalayage auto"), help_text=_("Date du balayage prévue"), null=True, blank=True)
created = models.DateTimeField(_("Date de création"), default=timezone.now)
finished = models.DateTimeField (_("Date de fin"), null=True, blank=True)
@@ -271,14 +301,19 @@ class Session(models.Model):
scanning_finished_at = models.DateTimeField(_("Balayage terminé à"), null=True, blank=True)
@classmethod
def get_session(self, sid):
return Session.objects.filter(pk=sid).first()
class Meta:
ordering = ['-created', ]
verbose_name = _("Session d'expérience")
verbose_name_plural = _("Sessions d'expériences")
verbose_name = _("Session")
verbose_name_plural = _("Sessions")
def __str__(self):
state = _("Terminée") if not self.active else _("Active")
return f'{self.name}: {state}'
return f'[ {self.id} ] {self.name} ({state})'
@receiver(post_save, sender=Session)
@@ -305,8 +340,8 @@ def create_periodic_task(sender, instance, created, **kwargs):
)
# Sauvegarde sans re-déclencher le signal
Session.objects.filter(pk=instance.pk).update(export_task=export_task)
except:
pass
except Exception as e:
print("create_periodic_task error", e)
if instance.expected_scanning:
try:
@@ -340,15 +375,21 @@ def delete_periodic_task(sender, instance, **kwargs):
instance.scanning_task.delete()
def get_uuid_from_session(session_id, multiwel_position, well_name):
return f'{session_id}-{multiwel_position}-{well_name}'
class SessionExperiment(models.Model):
author = models.ForeignKey(User, on_delete=models.CASCADE, verbose_name="Auteur", null=True, blank=True)
session = models.ForeignKey(Session, verbose_name=_("Session"), on_delete=models.SET_NULL, null=True, blank=True)
experiment = models.ForeignKey(Experiment, verbose_name=_("Expérience"), on_delete=models.SET_NULL, null=True, blank=True, related_name="session_experiments")
author = models.ForeignKey(User, on_delete=models.SET_NULL, verbose_name="Auteur", null=True, blank=True)
session = models.ForeignKey(Session, verbose_name=_("Session"), on_delete=models.CASCADE, null=True, blank=True)
experiment = models.ForeignKey(Experiment, verbose_name=_("Expérience"), on_delete=models.CASCADE, null=True, blank=True, related_name="session_experiments")
@classmethod
def experiment_by_session(cls, session_id, active=True):
return [ ss.experiment for ss in SessionExperiment.objects.filter(session__id=session_id, session__active=active).order_by('experiment__multiwell__order') ]
@classmethod
def uuid_from_session(cls, sid):
experiments = [ss.experiment for ss in SessionExperiment.objects.filter(session__id=sid, session__active=False)]
@@ -361,13 +402,66 @@ class SessionExperiment(models.Model):
uuid_list.append(uuid)
return uuid_list
@classmethod
def get_uuid(cls, session_id, experiment_id, well_name):
ss = SessionExperiment.objects.filter(session__id=session_id, experiment_id=experiment_id).first()
if ss:
return get_uuid_from_session(session_id, ss.experiment.multiwel.position, well_name)
return None
class Meta:
ordering = ['session',]
unique_together = ["session", "experiment"]
verbose_name = _("Session expérience")
verbose_name_plural = _("Sessions expériences")
verbose_name = _("Expérience d'une session")
verbose_name_plural = _("Expériences d'une session")
def __str__(self):
return f'{self.session.name}'
return f'{self.session.id}: {self.experiment.title}'
class ExperimentWell(models.Model):
author = models.ForeignKey(User, on_delete=models.SET_NULL, verbose_name="Auteur", null=True, blank=True)
experiment = models.ForeignKey(Experiment, verbose_name=_("Expérience"), on_delete=models.CASCADE, null=True, blank=True, related_name="experimentwell")
well = models.ForeignKey(Well, verbose_name=_("Puit"), on_delete=models.SET_NULL, null=True, blank=True, related_name="wellexperiment")
active = models.BooleanField(_("Active"), default=True)
@classmethod
def well_by_experiment(cls, experiment_id):
return ExperimentWell.objects.filter(experiment__id=experiment_id, active=True).order_by('well__name')
@classmethod
def wellname_by_experiment(cls, experiment_id):
return [ ew.well.name for ew in ExperimentWell.objects.filter(experiment__id=experiment_id, active=True).order_by('well__name') ]
class Meta:
ordering = ['experiment', 'well']
unique_together = ["experiment", "well", ]
verbose_name = _("Expérience puit")
verbose_name_plural = _("Expériences puits")
def __str__(self):
return f'{self.experiment.title}'
@receiver(post_save, sender=Experiment)
def create_experiment_well(sender, instance, created, **kwargs):
from planarian.models import ExperimentConfig
from .constants import ScannerConstants
wellposition = WellPosition.well_by_multiwell(instance.multiwell)
for wp in wellposition:
ExperimentWell.objects.get_or_create(experiment=instance, well=wp.well, author=instance.author, defaults={'active':True})
ExperimentConfig.objects.get_or_create(
experiment_key=instance,
well=wp.well.name,
author=instance.author,
experiment=instance.identifier,
defaults={
'px_per_mm': wp.px_per_mm,
'fps': ScannerConstants().get().video_frame_rate,
'well_radius_mm': instance.multiwell.diameter / 2,
}
)
+166 -46
View File
@@ -7,6 +7,8 @@ Created on 20 avr. 2026
@author: denis
'''
import logging
import time
from threading import Thread, Event
@@ -14,13 +16,12 @@ from threading import Thread, Event
from django.utils import timezone
from django.utils.html import mark_safe
from django.conf import settings
from planarian.models import ExperimentConfig
from . import models
logging.basicConfig(level=logging.INFO)
logger = logging.getLogger(__name__)
class WellIterator:
"""Itérateur personnalisé pour naviguer dans les Wells"""
@@ -75,8 +76,11 @@ class WellIterator:
class MultiWellManager:
def __init__(self, process):
self.process = process
self.cnc_controller = process.grbl
logger.info(f"MultiWellManager initialized with CNC controller: {self.cnc_controller}")
self.stop_playing = Event()
self.well_iterator = None
self.multiwel = None
@@ -85,6 +89,26 @@ class MultiWellManager:
self.scan_thread = None
self.test_thread = None
self.tracker_config = dict(
tube_axis = settings.TRACKER_TUBE_AXIS,
min_area_px = self.process.conf.min_area_px,
max_area_ratio = self.process.conf.max_area_ratio,
max_planarians = self.process.conf.max_planarians,
merge_kernel_size = self.process.conf.merge_kernel_size,
min_contour_dist_px = self.process.conf.min_contour_dist_px,
)
def set_tracker_config(self):
self.tracker_config = dict(
tube_axis = settings.TRACKER_TUBE_AXIS,
min_area_px = self.process.conf.min_area_px,
max_area_ratio = self.process.conf.max_area_ratio,
max_planarians = self.process.conf.max_planarians,
merge_kernel_size = self.process.conf.merge_kernel_size,
min_contour_dist_px = self.process.conf.min_contour_dist_px,
)
logger.info(f"Tracker config: {self.tracker_config}")
def set_default_values(self, feed=None, step=None, duration=None):
self._feed = feed or self.process.conf.calibration_default_feed
self._step = step or self.process.conf.calibration_default_step
@@ -110,58 +134,120 @@ class MultiWellManager:
return self.multiwell.config()
def multiwell_buttons(self):
def multiwell_buttons(self, btn_class="w3-button", onclick=''' onclick="goto_well(this)"'''):
multiwells = []
multiwells.append('''<div class="w3-border well-btn">''')
for wl in self.well_iterator:
multiwells.append(f"""<button class="w3-button well" value="{wl.order}" onclick="goto_well(this)">{wl.well.name}</button>""")
multiwells.append(f"""<button class="{btn_class} well" value="{wl.order}"{onclick}>{wl.well.name}</button>""")
multiwells.append('''</div>''')
self.well_iterator.reset()
return mark_safe("\n".join(multiwells))
def _grid_scanning_capture(self, uuid, duration):
#def _grid_scanning_capture(self, uuid, duration):
def _grid_scanning_capture(self, experiment, well_position, simulate=False):
uuid = None
try:
well = well_position.well
multiwell = experiment.multiwell
## create uuid for this capture
uuid = f'{self.process.data.session}-{multiwell.position}-{well.name}'
if self.process.use_tracking:
cfg = ExperimentConfig.objects.filter(experiment_key_id=experiment.id, well=well.name).first()
if not cfg:
raise Exception(f"Configuration d'expérience introuvable pour {experiment} / {well}")
# reset PlanarianTracker => on_well_change
self.process.cam.on_well_change(cfg, uuid=uuid, draw_contours=False)
## start recording
self.process.data.uuid = uuid
if not simulate:
self.process.data.record = True
self.process._send(current=well_position.order)
msg = f"Starting capture for {uuid} ordre: {well_position.order}"
logger.info(msg)
self.process._send(well_state=msg)
start = time.monotonic()
while not self.stop_playing.is_set():
if time.monotonic() - start > duration:
## stop after duration in experiemnt now
if time.monotonic() - start > experiment.duration:
break
self.cnc_controller.wait_for(1.0)
self.cnc_controller.wait_for(0.1)
self.process.cam._flush_current_well(uuid)
logger.info(f"Arrêter l'enregistrement {uuid}")
self.process.data.record = False
self.process.data.uuid = None
msg = f"{uuid}: capture done..."
except Exception as e:
msg = f"error during capture - {e}"
logger.error(msg)
finally:
self.process.cam._flush_current_well(uuid)
def _grid_scanning(self, experiment, xnext=0, ynext=0):
logger.info(msg)
self.process._send(scan_state=msg)
def _capture_file_simulation(self, name):
vf = settings.MEDIA_ROOT / 'simulation' / f'{name}.mp4'
if vf.exists():
self.process.cam._video_file = str(vf)
self.process.cam._error_occured = True
logger.info(f"Simulating capture with file {vf}")
def _is_well_valid(self, welposition, experiment):
names = models.ExperimentWell.wellname_by_experiment(experiment.id)
if welposition.well.name not in names:
return False
return True
def _grid_scanning(self, experiment, xnext=0, ynext=0, simulate=False):
try:
multiwell = experiment.multiwell
wells = models.WellPosition.objects.filter(multiwell_id=multiwell.id).order_by('order').all()
wellpositions = models.WellPosition.objects.filter(multiwell_id=multiwell.id).order_by('order').all()
cam = self.process.cam
cam._aligner.set_tube_diameter(multiwell.diameter)
self.stop_playing = Event()
for wl in wells:
for wl in wellpositions:
if self.stop_playing.is_set():
break
if not self._is_well_valid(wl, experiment):
continue
self.cnc_controller.move_to(wl.x, wl.y, feed=wl.multiwell.feed)
uuid = f'{self.process.data.session}-{multiwell.position}-{wl.well.name}'
self._grid_scanning_capture(uuid, multiwell.duration)
## change file
if self.process.conf.capture_type == 'file':
self.process.cam._error_occured = True
self._capture_file_simulation(wl.well.name)
self.process._send(scan_state=f"{uuid}: capture")
logger.info(f"Scan terminé — retour à l'origine (X={xnext:.1f} Y={ynext:.1f})")
self._grid_scanning_capture(experiment, wl, simulate=simulate)
msg =f"Scan terminé — retour à l'origine (X={xnext:.1f} Y={ynext:.1f})"
logger.info(msg)
self.process._send(state='scan_finished', msg=msg)
return True
except Exception as e:
msg = f"Error during grid scanning - {e}"
logger.error(msg)
self.process._send(state='error', msg=msg)
return False
finally:
self.cnc_controller.move_to(xnext, ynext, feed=multiwell.feed*2)
def _start_scanning(self, session, experiments):
def _start_scanning(self, session, experiments, simulate=False):
result = False
try:
self.process.get_config() # get video configuration if updated
self.process.cam._aligner.debug = False
self.stop_playing.clear()
xynext = []
for obs in experiments:
xynext.append((obs.multiwell.xbase, obs.multiwell.ybase))
@@ -171,20 +257,26 @@ class MultiWellManager:
self.process.data.session = session.id
started = timezone.now()
for obs in experiments:
msg = f"Starting scan for {obs} (well {pos}/{len(experiments)})"
logger.warning(msg)
self.process._send(well_state=msg)
if self.stop_playing.is_set():
break
obs.started = timezone.now()
obs.save()
xnext, ynext = xynext[pos]
pos +=1
self._grid_scanning(obs, xnext=xnext, ynext=ynext)
result = self._grid_scanning(obs, xnext=xnext, ynext=ynext, simulate=simulate)
obs.finished = timezone.now()
obs.save()
session.finished = timezone.now()
if self.stop_playing.is_set():
if self.stop_playing.is_set() or not result:
msg = f"Session {session.name} abandonnée à {session.finished} après {session.finished - started} secondes."
else:
if not simulate:
session.active = False
if session.scanning_task:
session.scanning_task.enabled = False
@@ -192,7 +284,12 @@ class MultiWellManager:
msg = f"Session {session.name} terminée à {session.finished} après {session.finished - started} secondes."
logger.info(msg)
self.process._send(scan_state=msg)
except Exception as e:
logger.error("Error during scanning process", e)
finally:
self.scan_thread = None
self.goto_0()
self.process._send(current=self.get_well_order())
def halt_scanning(self):
@@ -200,36 +297,57 @@ class MultiWellManager:
self.stop_playing.set()
self.well_iterator.reset()
self.process.cam._aligner.debug = False
self.scan_thread = None
self.test_thread = None
def scanning(self, sid):
try:
def scan_process(self, sid, simulate=False):
if self.scan_thread:
return
session = models.Session.objects.get(pk=sid)
experiments = models.SessionExperiment.experiment_by_session(sid)
self.scan_thread = Thread(target=self._start_scanning, args=(session, experiments, ), daemon=True).start()
except Exception as e:
print("MultiWellManager::scan error", e)
self.scan_thread = Thread(target=self._start_scanning, args=(session, experiments, simulate, ), daemon=True)
self.scan_thread.start()
def previous_well(self):
wl = self.well_iterator.previous()
if self.process.conf.capture_type == 'file':
self._capture_file_simulation(wl.well.name)
self.cnc_controller.move_to(wl.x, wl.y, feed=wl.multiwell.feed)
return {"state": "previous", "msg": f">>> ({wl.x}, {wl.y})"}
return {"state": "previous", "msg": f">>> {wl.well.name}: ({wl.x}, {wl.y})"}
def next_well(self):
wl = self.well_iterator.next()
if self.process.conf.capture_type == 'file':
self._capture_file_simulation(wl.well.name)
self.cnc_controller.move_to(wl.x, wl.y, feed=wl.multiwell.feed)
return {"state": "next", "msg": f">>> ({wl.x}, {wl.y})"}
return {"state": "next", "msg": f">>> {wl.well.name}: ({wl.x}, {wl.y})"}
def goto_well(self, numwell):
wl = self.well_iterator.seek(numwell)
self.cnc_controller.move_to(wl.x, wl.y, feed=wl.multiwell.feed)
return {"state": "goto", "msg": f">>> ({wl.x}, {wl.y})"}
if self.process.conf.capture_type == 'file':
self._capture_file_simulation(wl.well.name)
self.cnc_controller.move_to(wl.x, wl.y, feed=wl.multiwell.feed)
return {"state": "goto", "msg": f">>> {wl.well.name}: ({wl.x}, {wl.y})"}
def goto_xy(self):
wl = self.well_iterator.seek(0)
if self.process.conf.capture_type == 'file':
self._capture_file_simulation(wl.well.name)
self.cnc_controller.move_to(self.xbase, self.ybase, feed=self.feed)
def goto_0(self):
self.well_iterator.reset()
if self.process.conf.capture_type == 'file':
self._capture_file_simulation('zero')
self.cnc_controller.move_to(0, 0, feed=self.feed*2)
def set_well_position(self):
wl = self.well_iterator.get_current()
@@ -243,7 +361,7 @@ class MultiWellManager:
def _scanning_test(self, auto=False):
self.stop_playing = Event()
self.stop_playing.clear()
cam = self.process.cam
cam._aligner.set_tube_diameter(self.multiwell.diameter)
duration = self.duration if not auto else settings.CALIBRATION_AUTO_DURATION
@@ -252,8 +370,12 @@ class MultiWellManager:
for wl in self.well_iterator:
if self.stop_playing.is_set():
break
self.cnc_controller.wait_for(2.0)
self.cnc_controller.move_to(wl.x, wl.y, feed=wl.multiwell.feed)
## change file
if self.process.conf.capture_type == 'file':
self._capture_file_simulation(wl.well.name)
self.process._send(current=wl.order)
start = time.monotonic()
@@ -287,23 +409,24 @@ class MultiWellManager:
self.process._send(state='center', msg=msg)
self.cnc_controller.wait_for(0.1)
logger.info("Fin du centrage")
logger.info("Fin du test")
except Exception as e:
print(e)
logger.error("Error during scanning test", e)
finally:
self.test_thread = None
self.well_iterator.reset()
self.process.cam._aligner.debug = False
logger.info(f"Scan terminé — retour à l'origine (X=0, Y=0) en {int(time.monotonic()-start_test)} s")
self.cnc_controller.move_to(0, 0, feed=self.multiwell.feed*2)
self.test_thread = None
self.goto_0()
self.process._send(current=self.get_well_order())
def scan_test(self, auto=False):
if self.test_thread:
return
self.test_thread = Thread(target=self._scanning_test, args=(auto, ), daemon=True).start()
self.test_thread = Thread(target=self._scanning_test, args=(auto, ), daemon=True)
self.test_thread.start()
@property
def position(self):
@@ -369,14 +492,12 @@ class MultiWellManager:
def dy(self, value):
self._dy = value
def get_well_order(self):
wl = self.well_iterator.get_current()
if wl:
return wl.order
return None
def set_position(self):
x, y = self.cnc_controller.get_mpos()
self.cnc_controller.wait_for(2.0)
@@ -387,17 +508,16 @@ class MultiWellManager:
wl.px_per_mm = self.px_per_mm
wl.save()
def calib_toggle_debug(self):
""" Active / désactive le mode debug sur le stream."""
aligner = self.process.cam._aligner
aligner.debug = not aligner.debug
return {"state": "debug", "msg": f"Debug: {aligner.debug}"}
return {"state": "debug", "value": aligner.debug, "msg": f"Debug: {aligner.debug}"}
def set_calib_debug(self, value=True):
""" Active / désactive le mode debug sur le stream."""
aligner = self.process.cam._aligner
aligner.debug = value
return {"state": "debug", "msg": f"Debug: {aligner.debug}"}
return {"state": "debug", "value": aligner.debug, "msg": f"Debug: {aligner.debug}"}
+113 -40
View File
@@ -21,14 +21,18 @@ from celery.exceptions import Ignore
from celery.utils.log import get_task_logger
from redis import Redis
from dataclasses import dataclass
from modules import reductstore, grbl, utils
from modules import reductstore, utils, planarian_metrics
## camera devices
from modules.circular_crop import CircularCrop, CropStrategy
from .multiwell import MultiWellManager
from .constants import ScannerConstants
from . import models
# CNC
if not settings.GRBL_SIMULATION:
from modules.grbl import GRBLController # @UnusedImport
else:
from modules.grbl_simulator import GRBLController # @Reimport
@dataclass
class ProcessData:
@@ -42,6 +46,8 @@ class ProcessData:
logger = get_task_logger(__name__)
redisDB = Redis(host=settings.REDIS_HOST, port=settings.REDIS_PORT, db=0, decode_responses=True)
cameraDB = reductstore.ReductStore(name='camera')
planarianDB = planarian_metrics.ReductStoreClient(url=settings.REDUCTSTORE_URL, token=settings.REDUCTSTORE_TOKEN)
async_to_sync(planarianDB.connect)()
class CameraRecordManager():
@@ -139,11 +145,12 @@ class CameraRecordManager():
class ScannerProcess(Task):
name='scanner.scanner_process'
def __init__(self):
super().__init__()
self.channel_layer = get_channel_layer()
self.group = f'scanner_proc'
self.group = 'scanner_proc'
self.stop_event = Event()
self.cam = None
self.grbl = None
@@ -153,6 +160,7 @@ class ScannerProcess(Task):
self.data = ProcessData()
self.manager = None
self.recordDB = CameraRecordManager(cameraDB)
self.metricDB = planarianDB
def __call__(self, *args, **kwargs):
return self.start(*args, **kwargs)
@@ -160,8 +168,11 @@ class ScannerProcess(Task):
def set_crop_radius(self, radius):
return CircularCrop(radius=radius, strategy=CropStrategy.CROP_JPEG, jpeg_quality=self.image_quality)
def start(self, *args, **kwargs):
try:
def get_config(self):
'''
Constants:
reset si besoin les constantes vidéo
'''
self.conf = ScannerConstants().get()
self.use_tracking = self.conf.tracking
@@ -174,6 +185,12 @@ class ScannerProcess(Task):
self.video_jpg_quality = [int(cv2.IMWRITE_JPEG_QUALITY), self.video_quality]
self.image_jpg_quality = [int(cv2.IMWRITE_JPEG_QUALITY), self.image_quality]
return self.conf
def start(self, *args, **kwargs):
try:
self.get_config()
self.grbl_xmax = self.conf.grbl_xmax
self.grbl_ymax = self.conf.grbl_ymax
@@ -181,14 +198,9 @@ class ScannerProcess(Task):
capture_type = self.conf.capture_type
if capture_type == 'file':
video_lists = []
wells = models.Well.objects.all()
for wl in wells:
video_lists.append(str( settings.MEDIA_ROOT / 'simulation' / f'{wl.name}.mp4') )
from modules.videofile_capture import VideoFileCapture
self.cam = VideoFileCapture(
video_file=settings.MEDIA_ROOT / 'simulation' / 'A1.mp4',
video_file=settings.MEDIA_ROOT / 'simulation' / 'default_simulation.mp4',
fps=self.video_fps,
width=self.video_width,
height=self.video_height,
@@ -196,7 +208,6 @@ class ScannerProcess(Task):
use_tracking=self.use_tracking,
display=self._display,
parent=self,
video_lists=video_lists,
)
elif capture_type == 'webcam':
from modules.webcam_capture import WebcamCapture
@@ -226,7 +237,7 @@ class ScannerProcess(Task):
self.cam._active_median = False
self.cam.set_circular_crop(None)
self.grbl = grbl.GRBLController(
self.grbl = GRBLController(
send_callback=self._display,
x_max=self.conf.grbl_xmax,
y_max=self.conf.grbl_ymax
@@ -234,6 +245,8 @@ class ScannerProcess(Task):
self.stop_event.clear()
self.start_services()
return self.name
except Exception as e:
logger.error(f"Scanner started error: {e}")
raise Ignore()
@@ -250,11 +263,14 @@ class ScannerProcess(Task):
self.stop_event.set()
def start_services(self):
Thread(target=self._listen_to_redis, daemon=True).start()
Thread(target=self._init_manager, daemon=True).start()
Thread(target=self._recording, daemon=True).start()
Thread(target=self._init_grbl, daemon=True).start()
Thread(target=self._listen_to_redis, daemon=True).start()
self.cam.start()
logger.warning(f"Scanner services started ...")
def _send(self, **payload):
async_to_sync(self.channel_layer.group_send)(
self.group, {
@@ -267,30 +283,53 @@ class ScannerProcess(Task):
if self.grbl:
self._send(**msg)
def _on_frame(self, jpeg_bytes: bytes, ts: datetime, metrics: dict) -> None:
def _store_metric(self, uuid, metrics, ts):
if not isinstance(metrics, list):
return
for r in metrics:
pid = r["planarian_id"]
record = self.cam._metrics[pid].update(r, well_radius_mm=self.cam._params.well_radius_mm)
async_to_sync(planarianDB.store_metric)(
record,
self.cam._params.experiment,
self.cam._params.well,
uuid=uuid,
planarian=pid,
ts_us=ts,
)
def _store_frame(self, uuid, frame, ts, frame_count):
labels = {
"fps": self.video_fps,
"record_type": 'frame',
"frame_count": frame_count,
}
self.recordDB.write(uuid, frame, ts=ts, labels=labels)
def _on_frame(self, jpeg_bytes: bytes, ts: datetime, metrics: dict, frame_count: int = 0) -> None:
try:
if self.data.record:
self.record_queue.put((self.data.uuid, ts, jpeg_bytes, metrics))
self.record_queue.put((self.data.uuid, ts, jpeg_bytes, metrics, frame_count))
if self.data.play:
self._send(ts=ts.timestamp(), jpeg=base64.b64encode(jpeg_bytes).decode(), **metrics)
jpeg=base64.b64encode(jpeg_bytes).decode()
self._send(ts=ts.timestamp(), jpeg=jpeg, frame_count=frame_count)
except Exception as e:
logger.error(e)
def _recording(self):
logger.info(f"Scanner {self.group}: start recorder")
while not self.stop_event.is_set():
try:
(uuid, ts, frame, metrics) = self.record_queue.get()
labels = dict(fps=self.video_fps, session=self.data.session, detected="1" if metrics.get("detected") else "0")
(uuid, ts, frame, metrics, frame_count) = self.record_queue.get()
if self.cam.use_tracking:
self._store_metric(uuid, metrics, ts.timestamp())
if metrics.get("detected"):
labels.update({
"cx" : str(metrics["cx"]),
"cy" : str(metrics["cy"]),
"area_px" : str(metrics["area_px"]),
"speed_px_s" : str(metrics["speed_px_s"]),
"axial_pos" : str(metrics["axial_pos"]),
"axial_speed" : str(metrics["axial_speed"]),
})
self._store_frame(uuid, frame, ts, frame_count)
self.recordDB.write(uuid, frame, labels, ts=ts)
self.record_queue.task_done()
except Exception as e:
logger.error(f'recorder: {e}')
@@ -302,17 +341,23 @@ class ScannerProcess(Task):
self._send(state='serial', msg=f"Connected {self.grbl.port}")
self.grbl.go_origin(feed=feed)
if self.conf.capture_type == 'file':
self.manager._capture_file_simulation('zero')
self.grbl.wait_for(2.0)
def _init_manager(self):
logger.info(f"==== Start MultiWellManager!")
self.manager = MultiWellManager(process=self)
self.manager.set_calib_debug(False)
Event().wait(2.0)
def _listen_to_redis(self):
try:
logger.info(f"==== Scanner {self.group}: listen via redisDB")
pubsub = redisDB.pubsub()
pubsub.subscribe(self.group)
#self._init_grbl()
self.manager = MultiWellManager(process=self)
self.manager.set_calib_debug(False)
for message in pubsub.listen():
try:
@@ -333,15 +378,32 @@ class ScannerProcess(Task):
self.cam.set_circular_crop(self.crop)
self.cam._active_median = False
self.grbl.go_origin(feed=self.manager.feed)
self.cam.set_draw_contours(False)
buttons = self.manager.multiwell_buttons(btn_class="w3-btn well", onclick="")
self._send(buttons=buttons)
elif topic == 'scan':
elif topic == 'scan' or topic == 'simulate':
logger.info(f"==== Scan {cmd}")
sid = cmd.get("session", '0')
if sid == "0":
self._send(state='error', msg=str(_('La session est nulle!...')))
else:
try:
self.cam._active_median = False
self.manager.scanning(sid)
simulate = (topic=='simulate')
self.manager.scan_process(sid, simulate)
self._send(state=topic, msg=str(_('Balayage démarré...')))
except Exception as e:
logger.error(f"Scan error: {e}")
self._send(state='error', msg=str(_('Erreur lors du démarrage du balayage...')))
continue
self._send(
buttons=buttons,
current=self.manager.get_well_order(),
)
elif cmd["type"]=="calibrate":
topic = cmd.get("topic")
value = cmd.get("value")
@@ -356,6 +418,7 @@ class ScannerProcess(Task):
self.manager.set_multiwell(position)
self.cam.set_circular_crop(None)
self.cam._active_median = False
self.cam.set_draw_contours(False)
buttons = self.manager.multiwell_buttons()
elif topic == 'up':
@@ -372,11 +435,13 @@ class ScannerProcess(Task):
elif topic == 'median':
self.cam._active_median = not self.cam._active_median
self._send(state="median", value=self.cam._active_median, msg=f"Median: {self.cam._active_median}")
continue
elif topic == 'crop':
self.cam._active_crop = not self.cam._active_crop
self.cam.set_circular_crop(self.crop) if self.cam._active_crop else self.cam.set_circular_crop(None)
self._send(state="crop", value=self.cam._active_crop, msg=f"Crop: {self.cam._active_crop}")
continue
elif topic == 'crop_radius':
@@ -400,12 +465,10 @@ class ScannerProcess(Task):
self.manager.duration = float(value)
elif topic == 'goto_0':
self.grbl.go_origin(feed=self.manager.feed)
self.manager.well_iterator.reset()
self.manager.goto_0()
elif topic == 'goto_xy':
self.grbl.move_to(self.manager.xbase, self.manager.ybase, feed=self.manager.feed)
self.manager.well_iterator.seek(0)
self.manager.goto_xy()
elif topic == 'xy_base':
self.manager.set_position()
@@ -431,7 +494,6 @@ class ScannerProcess(Task):
elif topic == 'halt':
self.manager.halt_scanning()
elif topic == 'calib_debug':
msg = self.manager.calib_toggle_debug()
self._send(**msg)
@@ -453,6 +515,17 @@ class ScannerProcess(Task):
msg = self.manager.set_well_position()
self._send(**msg)
elif topic == 'draw':
draw = (value=="1")
self.cam.set_draw_contours(draw)
self._send(state=topic, msg=f"Tracking contour: {draw}")
elif topic in ['min_area_px', 'max_area_ratio', 'max_planarians', 'merge_kernel_size', 'min_contour_dist_px']:
value = int(value) if topic in ['min_area_px', 'max_planarians', 'merge_kernel_size', 'min_contour_dist_px'] else float(value)
self.manager.tracker_config[topic] = value
self.cam.on_test_well_change(**self.manager.tracker_config)
self._send(state=topic, msg=f"Value changed {value}")
self._send(
xbase=self.manager.xbase,
ybase=self.manager.ybase,
@@ -10,5 +10,3 @@
align-items: center;
}
@@ -1 +0,0 @@
@@ -0,0 +1,11 @@
.well {
padding: 0.2em;
}
.well-btn {
display: grid;
grid-template-columns: repeat(6, 1fr);
justify-items: center;
align-items: center;
}
@@ -42,6 +42,15 @@ class ScannerManager {
this.crop = options.crop;
this.crop_radius = options.crop_radius;
this.calib_auto = options.calib_auto;
try {
this.min_area_px = options.min_area_px;
this.max_area_ratio = options.max_area_ratio;
this.max_planarians = options.max_planarians;
this.merge_kernel_size = options.merge_kernel_size;
this.min_contour_dist_px = options.min_contour_dist_px;
this.draw = options.draw;
} catch(e) {}
}
init_controls() {
@@ -71,6 +80,15 @@ class ScannerManager {
this.calib_center.addEventListener('click', (e) => { this._send({ type: 'calibrate', topic: "center" }); });
this.calib_auto.addEventListener('click', (e) => { this._send({ type: 'calibrate', topic: "auto" }); });
this.halt.addEventListener('click', (e) => { this._send({ type: 'calibrate', topic: "halt" }); });
try {
this.min_area_px.addEventListener('change', (e) => { this._send({ type: 'calibrate', topic: "min_area_px", value: e.target.value }); });
this.max_area_ratio.addEventListener('change', (e) => { this._send({ type: 'calibrate', topic: "max_area_ratio", value: e.target.value }); });
this.max_planarians.addEventListener('change', (e) => { this._send({ type: 'calibrate', topic: "max_planarians", value: e.target.value}); });
this.merge_kernel_size.addEventListener('change', (e) => { this._send({ type: 'calibrate', topic: "merge_kernel_size", value: e.target.value}); });
this.min_contour_dist_px.addEventListener('change', (e) => { this._send({ type: 'calibrate', topic: "min_contour_dist_px", value: e.target.value }); });
this.draw.addEventListener('click', (e) => { this._send({ type: 'calibrate', topic: "draw", value: e.target.value }); });
} catch(e) {}
}
registerSocket(socket) {
@@ -83,17 +101,18 @@ class ScannerManager {
if (payload.jpeg) { this.container.src = `data:image/jpeg;base64,${payload.jpeg}`; }
if (payload.xbase) { this.xbase.textContent = payload.xbase; this.ybase.textContent = payload.ybase; }
if (payload.xy) { this.x.textContent=payload.x.toFixed(2); this.y.textContent=payload.y.toFixed(2); }
if (payload.state) { this.debug.insertAdjacentHTML('afterbegin', `<li>[ ${++this.debug_count} - ${payload.state} ]: ${payload.msg}</li>`); }
if (payload.state) {
if (payload.state == 'debug') {
const span = this.calib_debug.querySelector("span.debug"); span.style.color = payload.value ? '#f0f': '#fff';
} else if (payload.state == 'median') {
const span = this.median.querySelector("span.median"); span.style.color = payload.value ? '#f0f' : '#fff';
} else if (payload.state == 'crop') {
const span = this.crop.querySelector("span.crop"); span.style.color = payload.value ? '#f0f' : '#fff';
}
this.debug.insertAdjacentHTML('afterbegin', `<li>[ ${++this.debug_count} - ${payload.state} ]: ${payload.msg}</li>`);
}
if (payload.ts) { this.ts.textContent = timestampToLocalISOString(payload.ts); }
if (payload.detected && use_tracking) {
this.cx.textContent = payload.cx; this.cy.textContent = payload.cy;
this.speed_px_s.textContent = payload.speed_px_s;
this.axial_speed.textContent = payload.axial_speed;
this.axial_pos.textContent = payload.axial_pos;
this.area_px.textContent = payload.area_px;
this.frame_count.textContent = payload.count;
}
if (payload.buttons) { this.well_btn.innerHTML = payload.buttons; }
if (payload.current >= 0) {
document.querySelectorAll('button.w3-button.well').forEach(btn => {
@@ -101,7 +120,6 @@ class ScannerManager {
btn.classList.remove('w3-green');
});
}
} catch(e) { console.log(e); }
}
@@ -23,6 +23,9 @@ class ScannerManager {
this.area_px = options.area_px;
this.frame_count = options.frame_count;
this.scan_state = options.scan_state;
this.sim_bt = options.simulate || null;
this.well_btn = options.well_btn;
this.well_state = options.well_state;
}
init_controls() {
@@ -30,6 +33,9 @@ class ScannerManager {
this.crop.addEventListener('click', (e) => { this._send({ type: 'calibrate', topic: "crop" }); });
this.scan_bt.addEventListener('click', (e) => { this.scan(); });
this.halt_bt.addEventListener('click', (e) => { this.halt(); });
if (this.sim_bt)
this.sim_bt.addEventListener('click', (e) => { this.simulate(); });
}
registerSocket(socket) {
@@ -41,23 +47,34 @@ class ScannerManager {
try {
if (payload.jpeg) { this.container.src = `data:image/jpeg;base64,${payload.jpeg}`; }
if (payload.xy) { this.x.textContent=payload.x.toFixed(2); this.y.textContent=payload.y.toFixed(2); }
if (payload.state) { this.debug.insertAdjacentHTML('afterbegin', `<li>[ ${++this.debug_count} - ${payload.state} ]: ${payload.msg}</li>`); }
if (payload.state) {
if (payload.state == 'median') {
const span = this.median.querySelector("span.median"); span.style.color = payload.value ? '#f0f' : '#fff';
} else if (payload.state == 'crop') {
const span = this.crop.querySelector("span.crop"); span.style.color = payload.value ? '#f0f' : '#fff';
}
this.debug.insertAdjacentHTML('afterbegin', `<li>[ ${++this.debug_count} - ${payload.state} ]: ${payload.msg}</li>`);
}
if (payload.ts) { this.ts.textContent = timestampToLocalISOString(payload.ts); }
if (payload.scan_state) { this.scan_state.textContent=payload.scan_state;}
if (payload.well_state) { this.well_state.textContent=payload.well_state;}
if (payload.detected && use_tracking) {
this.cx.textContent = payload.cx; this.cy.textContent = payload.cy;
this.speed_px_s.textContent = payload.speed_px_s;
this.axial_speed.textContent = payload.axial_speed;
this.axial_pos.textContent = payload.axial_pos;
this.area_px.textContent = payload.area_px;
this.frame_count.textContent = payload.count;
if (payload.buttons) {
this.well_btn.innerHTML = payload.buttons;
const span = this.crop.querySelector("span.crop"); span.style.color = '#f0f';
}
if (payload.current >= 0) {
document.querySelectorAll('button.w3-btn.well').forEach(btn => {
if (btn.value==payload.current) { btn.classList.add('w3-green'); return; }
btn.classList.remove('w3-green');
});
}
} catch(e) { console.log(e); }
}
init() { this.axes = 0; this.cropping = 1; this._send({ type: 'scanner', topic: "init", }); }
scan() { this._send({ type: 'scanner', topic: "scan", session: this.session.value ? this.session.value: "0" }); }
simulate() { this._send({ type: 'scanner', topic: "simulate", session: this.session.value ? this.session.value: "0" }); }
halt() { this._send({ type: 'calibrate', topic: "halt" }); }
_send(message) { this.socket.send(message); }
+111 -64
View File
@@ -1,68 +1,51 @@
# tasks.py
import asyncio
import json
import requests
from celery import shared_task, group, chord, chain
from celery.utils.log import get_task_logger
from django.utils import timezone
from .process import ScannerProcess, ReplayProcess
from django.utils.translation import gettext_lazy as _
from .process import ScannerProcess, ReplayProcess, redisDB
from .export_tasks import shm_download_video, export_images_zip, export_video_mp4
from .constants import ScannerConstants
from . import models
logger = get_task_logger(__name__)
class ScannerTaskManager:
def __init__(self):
self.scanner = None
self.replay = None
def start_scanner(self):
if self.scanner is None:
self.scanner = ScannerProcess()
self.scanner.start()
def stop_scanner(self):
if self.scanner:
self.scanner.stop()
def start_replay(self, latency=5.0):
if self.replay is None:
self.replay = ReplayProcess(latency=latency)
self.replay.start()
def stop_replay(self):
if self.replay:
self.replay.stop()
task_manager = ScannerTaskManager()
@shared_task(bind=True)
def scanner_start(self):
task_manager.start_scanner()
return f"Scanner démarré."
#@shared_task(bind=True)
#def scanner_stop(self):
# task_manager.stop_scanner()
# return f"Scanner arrêté."
@shared_task(bind=True)
def replay_start(self):
task_manager.start_replay()
return f"Replay démarré."
#@shared_task(bind=True)
#def replay_stop(self):
# task_manager.stop_replay()
# return f"Replay arrêté."
@shared_task
def download_video(uuid, start_ts, end_ts, frame_rate=10, opencv_fourcc_format='mp4v', opencv_video_type='mp4'):
def scanner_start():
scanner = ScannerProcess()
scanner.start()
return str(_("Scanner démarré."))
@shared_task
def replay_start():
replay = ReplayProcess(latency=5.0)
replay.start()
return str(_("Replay démarré."))
@shared_task(bind=True)
def download_video(self, uuid, start_ts, end_ts, frame_rate=5, opencv_fourcc_format='mp4v', opencv_video_type='mp4'):
"""
Exécuter directement la fonction async DANS la tâche Celery.
Sans passer par une wrapper.
"""
try:
return asyncio.run(shm_download_video(uuid, start_ts, end_ts, frame_rate, opencv_fourcc_format, opencv_video_type))
logger.info(f"Task {self.request.id}: Processing {uuid} from {start_ts} to {end_ts}")
loop = asyncio.new_event_loop()
asyncio.set_event_loop(loop)
try:
result = loop.run_until_complete(
shm_download_video(uuid, start_ts, end_ts, frame_rate, opencv_fourcc_format, opencv_video_type) )
return result
finally:
loop.close()
except Exception as e:
logger.error(f"download_video: {e}")
logger.error(f"shm_download_video_task error: {e}", exc_info=True)
return { 'status': 'error', 'error': str(e), 'uuid': uuid}
@shared_task
def export_images(
@@ -78,10 +61,12 @@ def export_images(
except Exception as e:
logger.error(f"export_images: {e}")
@shared_task
def export_all_images(session_id=None):
try:
conf = models.Configuration.objects.filter(active=True).first()
conf = ScannerConstants().get()
if session_id is None:
sessions = [s.id for s in models.Session.objects.filter(active=False)]
else:
@@ -91,6 +76,7 @@ def export_all_images(session_id=None):
uuid_list = models.SessionExperiment.uuid_from_session(session_id)
job_zip = []
for uuid in uuid_list:
job = export_images.delay( # @UndefinedVariable
uuid,
start_ts=None,
@@ -103,11 +89,9 @@ def export_all_images(session_id=None):
except Exception as e:
logger.error(f"export_images: {e}")
@shared_task
def export_videos(uuid: str,
start_ts: float | None = None,
end_ts: float | None = None,
frame_rate: int = 5,
def export_videos(uuid: str, start_ts: float | None = None, end_ts: float | None = None, frame_rate: int = 5,
opencv_fourcc_format='mp4v',
opencv_video_type='mp4',
max_video_size_mb: int = 0,
@@ -117,12 +101,13 @@ def export_videos(uuid: str,
return asyncio.run(export_video_mp4(uuid, start_ts, end_ts, frame_rate, opencv_fourcc_format, opencv_video_type, max_video_size_mb, max_width, max_height))
except Exception as e:
logger.error(f"export_videos: {e}")
return {"success": False, "error": str(e)}
@shared_task
def export_all_videos(session_id=None):
try:
conf = models.Configuration.objects.filter(active=True).first()
conf = ScannerConstants().get()
if session_id is None:
sessions = [s.id for s in models.Session.objects.filter(active=False)]
else:
@@ -132,6 +117,7 @@ def export_all_videos(session_id=None):
uuid_list = models.SessionExperiment.uuid_from_session(session_id)
job_mp4 = []
for uuid in uuid_list:
job = export_videos.delay( # @UndefinedVariable
uuid,
start_ts=None,
@@ -162,7 +148,7 @@ def run_session_exports(self, session_id: str):
session.status = models.Session.Status.RUNNING
session.save(update_fields=["export_status"])
logger.info(f"run_session_exports [{session_id}]: export démarré")
chord(
group(
export_all_images.s(session_id),
@@ -187,7 +173,7 @@ def on_exports_done(results: list, session_id: str):
logger.error(f"on_exports_done [{session_id}]: échec avec {len(errors)} erreurs")
else:
session.export_status = models.Session.Status.DONE
logger.info(f"on_exports_done [{session_id}]: succès export terminé")
logger.warning(f"on_exports_done [{session_id}]: succès export terminé")
session.export_exported_at = timezone.now()
session.save(update_fields=["export_status", "export_exported_at"])
@@ -200,11 +186,10 @@ def scanning(session_id: str):
Scanning différé.
"""
try:
scanner = task_manager.scanner
scanner.cam.set_median(is_median=False)
scanner.cam.set_circular_crop(scanner.crop)
scanner.grbl.go_origin(feed=scanner.manager.feed)
scanner.manager.scan(scanner.grbl, session_id)
logger.warning("==== scanning session %s start", session_id)
group = 'scanner_proc'
data = { "type": "scanner", "topic": "scan", "session": session_id }
redisDB.publish(group, json.dumps(data))
except Exception as e:
logger.error(f"scanning session: {session_id} error {e}")
return {"status": "error", "message": str(e)}
@@ -243,4 +228,66 @@ def on_scanning_done(result: dict, session_id: str):
session.scanning_finished_at = timezone.now()
session.save(update_fields=["scanning_status", "scanning_finished_at"])
logger.info("==== Scanning done: session %s", session_id)
@shared_task
def http_request(req_type='json_post', url=None, user=None, passwd=None, headers={}, **kwargs):
def json_post():
return requests.post(url, json=kwargs, headers=headers, auth=(user, passwd), timeout=3)
def post():
return requests.post(url, params=kwargs, headers=headers, auth=(user, passwd), timeout=3)
def get():
return requests.get(url, params=kwargs, headers=headers, auth=(user, passwd), timeout=3)
request = {
'json_post': json_post,
'post': post,
'get':get
}
retries = 3
for attempt in range(retries):
try:
response = request[req_type]()
response.raise_for_status()
try:
data = response.json()
except ValueError:
data = response.text
resp = {"success": True, "data": data}
logger.info(data)
return resp
except requests.exceptions.Timeout:
logger.error(f"{attempt + 1}/{retries}: Délai d'attente dépassé")
except requests.exceptions.ConnectionError:
logger.error(f"{attempt + 1}/{retries}: Erreur de connexion")
except requests.exceptions.HTTPError as e:
raise
except Exception as e:
logger.error(f"Erreur inattendue: {str(e)}")
@shared_task
def supervisor_restart_service(params):
"""
Redémarre un service.
"""
try:
logger.warning("==== Supervisor scanner restart all services")
http_request(
req_type='get',
url=f'http://localhost:9001/{params}',
user='root',
passwd='toor',
headers={}
)
except Exception as e:
logger.error(f"supervisor_restart_all_services error {e}")
@@ -11,6 +11,60 @@
<a href="#" class="w3-bar-item w3-mobile w3-btn w3-hover-opacity w3-right w3-xlarge w3-text-green" onclick="goFullscreen()" title="{% trans 'Ecran plein' %}">
<i class="fa-solid fa-maximize"></i>
</a>
<div class="w3-dropdown-hover w3-right">
<button class="w3-button w3-dark-plus">&#9776;&nbsp;<span>{{ request.user.username }}</span></button>
<div class="w3-dropdown-content w3-bar-block w3-border w3-dark-low" style="right:.25em;">
{% if request.user.is_superuser %}
<a href="{% url 'scanner:admin' %}" class="w3-bar-item w3-btn w3-hover-opacity" title="{% trans "Accès django" %}">
<i class="fa-solid fa-gear w3-text-pink"></i> {% trans "Base de données" %}
</a>
<a href="{% url 'scanner:supervisor' %}" class="w3-bar-item w3-btn w3-hover-opacity" target="_blank" title="{% trans "Accès système" %}">
<i class="fa-solid fa-gears w3-text-purple"></i> {% trans "Supervision des services" %}
</a>
<a href="{% url 'scanner:reductstore' %}" class="w3-bar-item w3-btn w3-hover-opacity" target="_blank" title="{% trans "Accès système" %}">
<img class="w3-no-padding" src="/static/img/reductstore.png" style="width: 24px"> {% trans "Base de données Reductstore" %}
</a>
<a href="{% url 'scanner:adminer' %}" class="w3-bar-item w3-btn w3-hover-opacity" target="_blank" title="{% trans "Accès système" %}">
<img class="w3-no-padding" src="/static/img/adminer.png" style="width: 28px"> {% trans "Base de données mariadb" %}
</a>
<a href="{% url 'scanner:logs_scheduler' %}" class="w3-bar-item w3-btn w3-hover-opacity" target="_blank">
<i class="fa-regular fa-file-lines w3-text-orange"></i> {% trans "Logs des planifications" %}
</a>
<a href="{% url 'scanner:logs_worker' %}" class="w3-bar-item w3-btn w3-hover-opacity" target="_blank">
<i class="fa-regular fa-file-lines w3-text-amber"></i> {% trans "Logs des services" %}
</a>
{% endif %}
<div class="w3-bar-item w3-blue-grey"><i class="fa-solid fa-circle-question w3-text-amber"></i> {% trans "Guides" %}</div>
<a href="{% url 'scanner:documentation' 'doc_database' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-book w3-text-green"></i> {% trans "Descriptif des données" %}
</a>
<a href="{% url 'scanner:documentation' 'doc_calibration' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-book w3-text-pink"></i> {% trans "Calibration des multi-puits" %}
</a>
<a href="{% url 'scanner:documentation' 'doc_experiment' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-book w3-text-khaki"></i> {% trans "Démarrer des expériences" %}
</a>
<a href="{% url 'scanner:documentation' 'doc_scanning' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-book w3-text-orange"></i> {% trans "Balayage des puits" %}
</a>
<a href="{% url 'scanner:documentation' 'doc_results' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-book w3-text-amber"></i> {% trans "Exploiter les résultats des expériences" %}
</a>
<a href="{% url 'scanner:documentation' 'doc_medias' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-photo-film w3-text-purple"></i> {% trans "Gestionnaires des médias" %}
</a>
<hr class="w3-bar-item divider w3-grey">
<form method="post" action="{% url 'logout' %}">
{% csrf_token %}
<button class="w3-bar-item w3-btn w3-hover-opacity" type="submit">
<i class="fa-solid fa-right-from-bracket w3-text-red"></i> {% trans 'Déconnexion' %}
</button>
</form>
</div>
</div>
</div>
{% endblock %}
{% block sidebar %}
@@ -20,12 +74,6 @@
<span class="w3-tiny">{{ app_sub_title }}</span>
</a>
</div>
<form method="post" action="{% url 'logout' %}" class="w3-padding-small">
{% csrf_token %}
<button class="w3-bar-item w3-btn w3-hover-opacity" type="submit" title="{% trans 'Déconnexion' %}">
{{ request.user.username }}<i class="fa-solid fa-right-from-bracket w3-right"></i>
</button>
</form>
</div>
{% block system %}
<div class="w3-light-blue w3-padding-large">
@@ -63,57 +111,48 @@
{% block sidebar_list %}
<div class="w3-dark-light w3-padding-small">
{% block sidebar_command %}{% endblock %}
{% if request.user.is_superuser %}
<div>
<div class="w3-dark-light w3-margin-top-6">
<a href="#" class="w3-btn w3-padding-small" onclick="toggleDisplay(sId('_admin'))"><span class="w3-text-orange w3-xlarge">&#x26F6;</span>
{% trans "Administration" %}
</a>
</div>
<div id="_admin" style="display:none">
<a href="{% url 'scanner:admin' %}" class="w3-bar-item w3-btn w3-hover-opacity w3-margin-left">
<i class="fa-solid fa-gear w3-text-pink"></i> {% trans "Administration base de données" %}
</a>
<a href="{% url 'scanner:reductstore' %}" class="w3-bar-item w3-btn w3-hover-opacity w3-margin-left" target="_blank">
<img class="w3-no-padding" src="/static/img/reductstore.png" style="width: 24px"> {% trans "Base de données Reductstore" %}
</a>
<a href="{% url 'scanner:adminer' %}" class="w3-bar-item w3-btn w3-hover-opacity w3-margin-left" target="_blank">
<img class="w3-no-padding" src="/static/img/adminer.png" style="width: 28px"> {% trans "Base de données mariadb" %}
</a>
<!--a href="{% url 'scanner:portainer' %}" class="w3-bar-item w3-btn w3-hover-opacity" w3-margin-left target="_blank">
<img class="w3-no-padding" src="/static/img/portainer.png" style="width: 28px"> {% trans "Portainer" %}
</a-->
<a href="{% url 'scanner:supervisor' %}" class="w3-bar-item w3-btn w3-hover-opacity w3-margin-left" target="_blank">
<i class="fa-solid fa-gears w3-text-purple"></i> {% trans "Supervisor" %}
</a>
<a href="{% url 'scanner:logs_scheduler' %}" class="w3-bar-item w3-btn w3-hover-opacity w3-margin-left" target="_blank">
<i class="fa-regular fa-file-lines w3-text-orange"></i> {% trans "Logs des planifications" %}
</a>
<a href="{% url 'scanner:logs_worker' %}" class="w3-bar-item w3-btn w3-hover-opacity w3-margin-left" target="_blank">
<i class="fa-regular fa-file-lines w3-text-amber"></i> {% trans "Logs des services" %}
</a>
</div>
</div>
{% endif %}
{% block sidebar_smenu %}
{% if request.user.is_superuser and request.user.is_staff %}
<a href="{% url 'scanner:calibration' %}" class="w3-bar-item w3-btn w3-hover-opacity w3-margin-bottom">
<i class="fa-solid fa-wrench w3-text-red w3-xlarge"></i> {% trans "Calibration" %}
{% if request.user.is_superuser or request.user.is_staff %}
<a href="{% url 'scanner:session_view' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-gear w3-text-purple w3-xlarge"></i> {% trans "Création de sessions d'expériences" %}
</a>
<hr class="w3-bar-item divider w3-grey">
<a href="{% url 'scanner:experiment_view' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-gear w3-text-pink w3-xlarge"></i> {% trans "Gestions des expériences" %}
</a>
<a href="{% url 'scanner:experimentconfig_view' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-gears w3-text-pink w3-xlarge"></i> {% trans "Configuration des expériences" %}
</a>
{% if conf.tracking %}
<a href="{% url 'planarian:import-params' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-file-import w3-text-lime w3-xlarge"></i> {% trans "Importer des configurations depuis CSV" %}
</a>
{% endif %}
<a href="{% url 'scanner:main' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<a href="{% url 'scanner:calibration' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-wrench w3-text-orange w3-xlarge"></i> {% trans "Calibration" %}
</a>
<hr class="w3-bar-item divider w3-grey w3-margin-bottom">
{% endif %}
<a href="{% url 'scanner:scanning' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-film w3-text-green w3-xlarge""></i> {% trans "Balayage multi-puits" %}
</a>
<div class="w3-bar-item w3-blue-grey"><i class="fa-solid fa-square-poll-vertical w3-text-amber"></i> {% trans "Résultats " %}</div>
{% if conf.tracking %}
<a href="{% url 'planarian:export-csv' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-file-export w3-text-lime w3-xlarge"></i> {% trans "Export CSV des expériences" %}
</a>
{% endif %}
<a href="{% url 'scanner:images' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-regular fa-images w3-text-cyan w3-xlarge" w3-xlarge""></i> {% trans "Gestionnaire d'images" %}
</a>
<a href="{% url 'scanner:replay' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-podcast w3-text-ambe w3-xlarge"r"></i> {% trans "Redifusion vidéos" %}
<i class="fa-solid fa-podcast w3-text-amber w3-xlarge"r"></i> {% trans "Redifusion vidéos" %}
</a>
<a href="{% url 'scanner:export_medias' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-file-export w3-text-pink w3-xlarge"></i> {% trans "Exporter les fichiers multimédias" %}
</a>
{% endblock %}
{% endblock %}
</div>
{% endblock %}
{% endblock %}
@@ -86,6 +86,7 @@
</div>
<div class="w3-row w3-row-padding">
<div id="_well_btn" class="w3-col w3-margin-bottom"></div>
<div class="w3-third">
<button id="_previous" class="w3-button w3-dark-xlight w3-round-large w3-padding-small">
<span class="w3-small">{% trans 'Précéd.' %}</span><br><i class="fa-solid fa-circle-left w3-xlarge"></i>
@@ -133,21 +134,49 @@
</div>
<div class="w3-row w3-row-padding">
<div class="w3-half">
<button id="_calib_debug" class="w3-button w3-dark-xlight w3-round-large w3-padding-1" title="{% trans 'Ce mode permet les réglages graphiques' %}">
{% trans 'Debug' %}<br><i class="fa-solid fa-triangle-exclamation w3-text-amber w3-xlarge"></i>
<button id="_calib_debug" class="w3-button w3-dark-xlight w3-round-large w3-padding-1 w3-block" title="{% trans 'Ce mode permet les réglages graphiques' %}">
<span class="debug">{% trans 'Debug' %}</span><br><i class="fa-solid fa-triangle-exclamation w3-text-amber w3-xlarge"></i>
</button>
</div>
<div class="w3-half">
<button id="_median" class="w3-button w3-dark-xlight w3-round-large w3-padding-1">
{% trans 'Axes' %}<br><i class="fa-solid fa-crosshairs w3-text-amber w3-xlarge"></i>
<button id="_median" class="w3-button w3-dark-xlight w3-round-large w3-padding-1 w3-block">
<span class="median">{% trans 'Axes' %}</span><br><i class="fa-solid fa-crosshairs w3-text-amber w3-xlarge"></i>
</button>
</div>
<div class="w3-col">
<button id="_crop" class="w3-button w3-dark-xlight w3-round-large w3-padding-small w3-margin-top w3-block" title="{% trans 'Ce mode actionne le pointage graphique' %}">
{% trans 'Recadrer' %}<br><i class="fa-solid fa-crop w3-text-amber w3-xlarge"></i>
<span class="crop">{% trans 'Recadrer pour calibrer / suivre' %}</span><br><i class="fa-solid fa-crop w3-text-amber w3-xlarge"></i>
</button>
</div>
</div>
{% if conf.tracking and conf.tracking_setting %}
<div class="w3-row w3-row-padding w3-light-grey w3-padding-small w3-margin-1 w3-round w3-round-large w3-margin-top w3-left-align w3-paddin-top">
<div class="w3-half">
<input id="_min_area_px" type="number" min="5" max="100" step="1" class="w3-round" value="{{ conf.min_area_px }}"
title="{% trans 'surface minimale de contour pour être considéré valide (px carré)' %}"><br>{% trans 'Min contour' %}
</div>
<div class="w3-half">
<input id="_max_area_ratio" type="number" min="0.05" max="1.0" step="0.05" class="w3-round" value="{{ conf.max_area_ratio|stringformat:"s" }}"
title="{% trans 'surface maximale de contour en fraction de la frame (défaut 10%)' %}"><br>{% trans 'Max contour' %}
</div>
<div class="w3-half">
<input id="_merge_kernel_size" type="number" min="5" max="320" step="1" class="w3-round" value="{{ conf.merge_kernel_size }}"
title="{% trans 'Taille du kernel elliptique de fusion des fragments (px)' %}"><br>{% trans 'Taille kernel' %}
</div>
<div class="w3-half">
<input id="_min_contour_dist_px" type="number" min="10" max="320" step="1" class="w3-round" value="{{ conf.min_contour_dist_px }}"
title="{% trans 'Distance min entre deux contours pour les considérer comme individus distincts. Défaut: 40px' %}"><br>{% trans 'Distance min' %}
</div>
<div class="w3-half">
<input id="_max_planarians" type="number" min="1" max="10" step="1" class="w3-round" value="{{ conf.max_planarians }}"
title="{% trans 'Nombre maximum de planaires à suivre simultanément (1-10)' %}"><br>{% trans 'Planaires' %}
</div>
<div class="w3-half">
<input id="_draw" type="checkbox" value="0" onclick="if (this.checked){this.value='1';}else{ this.value='0';}" title="{% trans 'Dessiner le contour' %}">
<span class="w3-nbsp">{% trans 'Contour' %}</span>
</div>
</div>
{% endif %}
<div class="w3-row w3-row-padding">
<div class="w3-half w3-margin-top">
<span>{% trans 'Rayon' %} px</span><br>
@@ -227,7 +256,13 @@
well_btn : sId("_well_btn"),
median : sId("_median"),
crop : sId("_crop"),
crop_radius : sId("_crop_radius")
crop_radius : sId("_crop_radius"),
min_area_px : sId("_min_area_px"),
max_area_ratio : sId("_max_area_ratio"),
max_planarians : sId("_max_planarians"),
merge_kernel_size : sId("_merge_kernel_size"),
min_contour_dist_px : sId("_min_contour_dist_px"),
draw : sId("_draw")
};
</script>
<script src="/static/scanner/js/calibration.js"></script>
@@ -0,0 +1,6 @@
{% for ss in experiments %}
<div>
<input class="" type="radio" name="_expid" value="{{ ss.id }}" {% if ss.id == current_experiment.id %}checked{% endif %} onchange="this.form.submit()" >
<label>{{ ss }}</label>
</div>
{% endfor %}
@@ -0,0 +1,68 @@
{% extends 'scanner/base.html' %}
{% load i18n %}
{% block columns %}{% endblock %}
{% block sidebar_list %}
<a href="/" class="w3-bar-item w3-btn w3-hover-opacity"><i class="fa-solid fa-house w3-text-orange w3-xlarge"></i> {% trans "Retour accueil" %}</a>
<form method="post" class="w3-bar-item" action="">
{% csrf_token %}
<select id="_sid" name="_sid" class="w3-select w3-margin-bottom" onchange="this.form.submit()" title="{% trans "Ensemble d'expériences" %}">
<option value="0">---- {% trans "Session" %}</option>
{% for s in sessions %}
<option value="{{ s.id }}" {% if s.id == current_session.id %}selected{% endif %}>{{ s }}</option>
{% endfor %}
</select>
</form>
{% endblock %}
{% block content %}
<div class="w3-container w50 w3-div-center w3-border w3-round w3-round-xlarge w3-margin-top">
<div class="w3-panel w3-pale-blue w3-round w3-round-xlarge w3-margin-bottom">
<p>
{% trans "L'explortation des fichiers multimédia peut durer plusieurs heures." %}
{% trans "Préférer l'exportation différée." %}
</p>
</div>
{% if current_session %}
<form method="post" novalidate class="w3-row w3-row-padding">
{% csrf_token %}
<input type="hidden" name="_sid" value="{{ current_session.id }}">
<div class="w3-col w3-margin-bottom">
<label class="w3-text-blue-grey">{% trans "Auteur" %}</label> {{ current_session.author }}
</div>
<div class="w3-col w3-margin-bottom">
<label class="w3-text-blue-grey">{% trans "Session" %}</label> {{ current_session }}
</div>
<div class="w3-col w3-margin-bottom">
<label class="w3-text-blue-grey">{% trans "Date de création" %}</label> {{ current_session.created }}
</div>
<div class="w3-col w3-margin-bottom">
<label class="w3-text-blue-grey">{% trans "Status" %}</label> {{ current_session.export_status }}
</div>
<div class="w3-col w3-margin-top">
<button type="submit" name="valid" class="w3-button w3-blue w3-round w3-round-large w3-large w3-padding w3-margin-bottom" value="ok">
<i class="fa-solid fa-file-export w3-text-red w3-xlarge"></i> {% trans "Exporter" %}
</button>
<a href="/" class="w3-button w3-light-grey w3-round w3-round-large w3-large w3-padding w3-margin-left w3-margin-bottom">
<span class="w3-xlarge"></span>{% trans "Annuler" %}
</a>
</div>
</form>
{% else %}
<div class="w3-container w3-padding-64 w3-margin" style="max-width:760px; margin:auto;">
<h3 class="w3-panel w3-blue w3-round-xlarge w3-padding-64 w3-center"> {% trans "Choisir une session" %}</h3>
</div>
{% endif %}
</div>
{% if current_session and current_session.export_status == 'running' %}
<div class="w3-padding w3-margin-top">
<iframe width="100%" src="{{ url }}" style="border:none; height:30vh;display:block;"></iframe>
</div>
{% endif %}
{% endblock %}
@@ -9,24 +9,29 @@
<a href="/" class="w3-bar-item w3-btn w3-hover-opacity"><i class="fa-solid fa-house w3-text-orange w3-xlarge"></i> {% trans "Retour accueil" %}</a>
<form method="post" class="w3-bar-item" action="">
{% csrf_token %}
<select id="_sid" name="_sid" class="w3-select w3-margin-bottom" onchange="this.form.submit()">
<option value="0">---- {% trans "Session d'expérience" %}</option>
<select id="_sid" name="_sid" class="w3-select w3-margin-bottom" onchange="this.form.submit()" title="{% trans "Ensemble d'expériences" %}">
<option value="0">---- {% trans "Session" %}</option>
{% for s in sessions %}
<option value="{{ s.id }}" {% if s.id == cursid %}selected{% endif %}>{{ s.name }}</option>
<option value="{{ s.id }}" {% if s.id == current_session.id %}selected{% endif %}>{{ s }}</option>
{% endfor %}
</select>
{% if cursid %}
{% multiwell_cards cursid experiments %}
<div class="w3-margin-left w3-margin-bottom">
{% include "scanner/experiment-inc.html" %}
</div>
{% if current_session.id and current_experiment %}
{% multiwell_cards current_session.id current_experiment %}
{% endif %}
</form>
{% if cursid %}
<a href="#" class="w3-bar-item w3-btn w3-hover-opacity" onclick="download_all_images()">
<i class="fa-solid fa-file-export w3-text-red w3-xlarge"></i> {% trans "Exporter l'ensemble des images" %}
{% if current_session.id %}
<a href="#" class="w3-bar-item w3-btn w3-hover-opacity" onclick="download_all_images({{ current_session.id }})">
<i class="fa-solid fa-file-export w3-text-red w3-xlarge"></i> {% trans "Exporter l'ensemble des images de la session" %}<br>
<span class="w3-margin-left">{{ export_destination }}
</a>
{% endif %}
{% endblock %}
{% block content %}
{% if current_session and current_experiment %}
<div id="image-grid">
{% if images %}
{% for img in images %}
@@ -46,6 +51,11 @@
{% endfor %}
{% endif %}
</div>
{% else %}
<div class="w3-container w3-padding-64" style="max-width:760px; margin:auto;">
<h3 class="w3-panel w3-blue w3-round-xlarge w3-padding-64 w3-center"> {% trans "Choisir une session" %}</h3>
</div>
{% endif %}
{% endblock %}
{% block modal %}
{% include "scanner/image-preview.html" %}
@@ -58,7 +68,8 @@
const duration = parseInt("{{ duration }}");
const uuid_btn = sId("btn-" + "{{ uuid }}");
const image_endpoint = "{% url 'scanner:export_api' %}";
const sid = parseInt("{{ cursid }}");
const export_msg = "{% trans "Confirmer l'export des images." %}";
const export_msg_long = "{% trans "ATTENTION le processus peut être long!" %}";
function setGridColumns(col) { container.style.setProperty("--grid-columns", col); updateActiveButton(col); }
function handleMultiwell(b) { b.classList.add('w3-green'); }
@@ -71,7 +82,7 @@
}
function image_save(name, img) {
const ok = confirm(`Télécharger le fichier ?\n\n${name}`);
const ok = confirm(export_msg);
if (!ok) return false;
fetch(img)
.then(res => res.blob())
@@ -87,7 +98,9 @@
});
}
function download_all_images() {
function download_all_images(sid) {
const ok = confirm(export_msg +' '+ export_msg_long);
if (!ok) return false;
fetch(image_endpoint, {
method: 'POST',
headers: { 'Content-Type': 'application/json' },
@@ -95,14 +108,16 @@
action: 'export_images',
sid: sid,
})
}).then(res => {
console.log(res);
}).catch(error => {
})
.then(response => response.json())
.then(res => {
alert(res.msg);
})
.catch(error => {
console.error('Erreur:', error);
});
}
}
setGridColumns(columns);
if (uuid_btn)
handleMultiwell(uuid_btn);
@@ -11,23 +11,29 @@
<form method="post" class="w3-bar-item" action="">
{% csrf_token %}
<select id="_sid" name="_sid" class="w3-select w3-margin-bottom" onchange="this.form.submit()">
<option value="0">---- {% trans "Session d'expériences" %}</option>
<option value="0">---- {% trans "Session" %}</option>
{% for s in sessions %}
<option value="{{ s.id }}" {% if s.id == cursid %}selected{% endif %}>{{ s.name }}</option>
<option value="{{ s.id }}" {% if s.id == current_session.id %}selected{% endif %}>{{ s }}</option>
{% endfor %}
</select>
{% if cursid %}
{% multiwell_cards cursid experiments %}
<div class="w3-margin-left w3-margin-bottom">
{% include "scanner/experiment-inc.html" %}
</div>
{% if current_session.id and current_experiment %}
{% multiwell_cards current_session.id current_experiment %}
{% endif %}
</form>
{% if cursid %}
<a href="#" class="w3-bar-item w3-btn w3-hover-opacity" onclick="download_all_videos()">
<i class="fa-solid fa-file-export w3-text-red w3-xlarge"></i> {% trans "Exporter l'ensemble des vidéos" %}
{% if current_session.id %}
<a href="#" class="w3-bar-item w3-btn w3-hover-opacity" onclick="download_all_videos({{ current_session.id }})">
<i class="fa-solid fa-file-export w3-text-red w3-xlarge"></i> {% trans "Exporter l'ensemble des vidéos" %}<br>
<span class="w3-margin-left">{{ export_destination }}</span>
</a>
{% endif %}
{% endblock %}
{% block content %}
{% if current_session and current_experiment %}
<div id="replay-grid" class="w3-black">
{% if image %}
<div class="w3-card-4 w3-border">
@@ -61,6 +67,11 @@
</div>
{% endif %}
</div>
{% else %}
<div class="w3-container w3-padding-64" style="max-width:760px; margin:auto;">
<h3 class="w3-panel w3-blue w3-round-xlarge w3-padding-64 w3-center"> {% trans "Choisir une session" %}</h3>
</div>
{% endif %}
{% endblock %}
{% block js_footer %}
@@ -70,9 +81,12 @@
const ws_route = "{{ ws_route }}";
const uuid_btn = sId("btn-" + "{{ uuid }}");
const image_endpoint = "{% url 'scanner:export_api' %}";
const sid = parseInt("{{ cursid }}");
const export_msg = "{% trans "Confirmer l'export des vidéos. ATTENTION le processus peut être long!" %}";
function download_all_videos() {
function download_all_videos(sid) {
const ok = confirm(export_msg);
if (!ok) return false;
fetch(image_endpoint, {
method: 'POST',
headers: { 'Content-Type': 'application/json' },
@@ -80,9 +94,12 @@
action: 'export_videos',
sid: sid,
})
}).then(res => {
console.log(res);
}).catch(error => {
})
.then(response => response.json())
.then(res => {
alert(res.msg);
})
.catch(error => {
console.error('Erreur:', error);
});
}
@@ -1,7 +1,7 @@
<div class="w3-row">
{% if conf.tracking %}
<div class="w3-col w3-small" style="width:180px">
{#% if conf.tracking %#}
<!--div class="w3-col w3-small" style="width:180px">
<div>Num: <span id="_count"></span></div>
<div>Aire: <span id="_area_px"></span></div>
@@ -10,8 +10,8 @@
<div>V: <span id="_speed_px_s"></span> px/s</div>
<div>V.Ax: <span id="_axial_speed"></span> px/s</div>
<div>Ax pos: <span id="_axial_pos"></span></div>
</div>
{% endif %}
</div-->
{#% endif %#}
<div class="w3-rest">
<img id="scan-img" class="w3-image">
</div>
@@ -3,7 +3,7 @@
{% block styles %}
{{ block.super }}
<link href="/static/scanner/css/main.css" rel="stylesheet">
<link href="/static/scanner/css/scanning.css" rel="stylesheet">
{% endblock %}
{% block columns %}{% endblock %}
@@ -14,7 +14,7 @@
<div>{% trans "Choix de la session" %}</div>
<select id="_session" class="w3-select">
{% for s in sessions %}
<option value="{{ s.id }}">{{ s.name }}</option>
<option value="{{ s.id }}">{{ s }}</option>
{% endfor %}
</select>
</div>
@@ -25,33 +25,47 @@
<div class="w3-col w3-padding"><span id="_uuid"></span></div>
</div>
</div>
<div class="w3-col">
<button id="_median" class="w3-button w3-dark-xlight w3-round-large w3-padding-small w3-block">
{% trans 'Axes' %}&nbsp;<br><i class="fa-solid fa-crosshairs w3-text-amber w3-xlarge"></i>
<div class="w3-row w3-row-padding">
<div class="w3-half">
<button id="_median" class="w3-button w3-dark-xlight w3-round-large w3-block">
<span class="median">{% trans 'Axes' %}</span><br><i class="fa-solid fa-crosshairs w3-text-amber w3-xlarge"></i>
</button>
</div>
<div class="w3-col">
<button id="_crop" class="w3-button w3-dark-xlight w3-round-large w3-padding-top w3-margin-top w3-block">
{% trans 'Recadrer' %}<br><i class="fa-solid fa-crop w3-text-amber w3-xlarge"></i>
<div class="w3-half">
<button id="_crop" class="w3-button w3-dark-xlight w3-round-large w3-block">
<span class="crop" style="color: red">{% trans 'Recadrer' %}</span><br><i class="fa-solid fa-crop w3-text-amber w3-xlarge"></i>
</button>
</div>
<div class="w3-col">
<button id="_scan" class="w3-button w3-dark-xlight w3-round-large w3-margin-top w3-block">
{% trans 'Lancer le balayage' %}<br><i class="fa-solid fa-circle-check w3-text-orange w3-xlarge"></i>
</div>
<div class="w3-row w3-row-padding">
<div class="{% if conf.scan_simulation %}w3-twothird{% else %}w3-col{% endif %} w3-center">
<button id="_scan" class="w3-button w3-light-blue w3-round-large w3-margin-top w3-block">
<span class="w3-bold">{% trans 'Lancer' %}<br>{% trans 'le balayage' %}</span><br><i class="fa-solid fa-circle-check w3-text-blue w3-xlarge"></i>
</button>
</div>
{% if conf.scan_simulation %}
<div class="w3-third w3-center">
<button id="_simulate" class="w3-button w3-dark-xlight w3-round-large w3-margin-top w3-block">
<span class="w3-bold">{% trans 'Simuler' %}<br>{% trans 'le balayage' %}</span><br><i class="fa-solid fa-triangle-exclamation w3-text-orange w3-xlarge"></i>
</button>
</div>
{% endif %}
<div class="w3-col">
<div id="_well_state" class="w3-margin-top w3-small w3-text-amber w3-justify"></div>
<div id="_well_btn"></div>
</div>
<div class="w3-col">
<button id="_halt" class="w3-button w3-red w3-round-large w3-margin-top w3-block">
{% trans 'ARRET' %}<br><i class="fa-solid fa-hand w3-xlarge"></i>
</button>
</div>
</div>
<div class="w3-col">
<div class="w3-margin-top w3-padding w3-small">
<div class="w3-margin-top w3-padding-small w3-small">
<span id="_ts"></span>
</div>
<div class="w3-margin-top w3-padding w3-small">
<span id="_scan_state" class="w3-text-amber w3-border"></span>
<div class="w3-margin-top w3-small">
<span id="_scan_state" class="w3-text-amber w3-padding w3-justify"></span>
</div>
</div>
</div>
@@ -85,10 +99,14 @@
axial_pos : sId("_axial_pos"),
area_px : sId("_area_px"),
frame_count : sId("_count"),
scan_state: sId("_scan_state")
scan_state : sId("_scan_state"),
simulate : sId("_simulate"),
well_btn : sId("_well_btn"),
well_state : sId("_well_state")
};
</script>
<script src="/static/scanner/js/main.js"></script>
<script src="/static/scanner/js/scanning.js"></script>
<script>
const manager = new ScannerManager(container, options);
const protocol = location.protocol === "https:" ? "wss" : "ws";
@@ -5,22 +5,19 @@ from django.utils.html import mark_safe
register = template.Library()
@register.simple_tag
def multiwell_cards(sid, experiments):
def multiwell_cards(sid, experiment):
multiwells = []
for obs in experiments:
row_def = obs.multiwell.row_def.split(',')
row_def = experiment.multiwell.row_def.split(',')
multiwells.append(
f'''
<div class="w3-center w3-sand">{obs.title}</div>
<div class="w3-padding-small w3-sand">{experiment.title}</div>
<div class="w3-border multiwell_cards">
''')
for row in range(obs.multiwell.rows):
for col in range(obs.multiwell.cols):
for row in range(experiment.multiwell.rows):
for col in range(experiment.multiwell.cols):
btn = f'{row_def[row]}{col+1}'
uuid = f'{sid}-{obs.multiwell.position}-{btn}'
uuid = f'{sid}-{experiment.multiwell.position}-{btn}'
multiwells.append(f"""<button id="btn-{uuid}" name="_multiwell" class="multiwell w3-button" value="{uuid}" onclick="this.form.submit()">{btn}</button>""")
multiwells.append('''</div>''')
return mark_safe("\n".join(multiwells))
+9 -1
View File
@@ -13,10 +13,18 @@ urlpatterns = [
path('supervisor/', views.supervisor_view, name='supervisor'),
path('logs/worker', views.supervisor_worker, name='logs_worker'),
path('logs/scheduler', views.supervisor_scheduler, name='logs_scheduler'),
path("doc/<slug:template>/", views.documentation, name="documentation"),
path('main/', views.main_view, name='main'),
path('session/view', views.admin_session_view, name='session_view'),
path('experiment/view', views.admin_experiment_view, name='experiment_view'),
path('experiment/config/view', views.admin_experimentconfig_view, name='experimentconfig_view'),
path('periodictask/view', views.admin_periodictask_view, name='periodictask_view'),
path('scanning/', views.scanning_view, name='scanning'),
path('images/', views.images_view, name='images'),
path('replay/', views.replay_view, name='replay'),
path('export/medias/', views.export_medias, name='export_medias'),
path('api/stats/', views.stats_view, name='api_stats'),
path('api/video/', views.download_api, name='download_api'),
path('api/export/', views.export_api, name='export_api'),
+142 -31
View File
@@ -1,13 +1,16 @@
#
import os
from asgiref.sync import async_to_sync
import base64, json
from django.shortcuts import render
from django.http import JsonResponse
from django.shortcuts import render #, redirect
from django.http import JsonResponse, FileResponse
from django.utils.translation import gettext_lazy as _
from django.views.decorators.http import require_GET, require_POST
from django.views.decorators.csrf import csrf_exempt
from django.contrib.auth.decorators import login_required
from django.contrib.auth.decorators import login_required, user_passes_test
from django.conf import settings
from django.utils import timezone
from reduct.time import unix_timestamp_to_iso
from modules.system_stats import get_cached_stats, start_background_updater
from modules import reductstore
@@ -21,6 +24,10 @@ record_manager = CameraRecordManager(cameraDB)
start_background_updater()
def is_staff_or_admin(user):
return user.is_staff or user.is_superuser
@require_GET
def stats_view(request):
"""
@@ -32,58 +39,100 @@ def stats_view(request):
except Exception as e:
return JsonResponse({"error": str(e)}, status=500)
def global_context(request, **ctx):
default_multiwell = models.MultiWell.objects.filter(default=True).first()
conf = ScannerConstants().get()
print(conf, type(conf))
return dict(
app_title=settings.APP_TITLE,
app_sub_title=settings.APP_SUB_TITLE,
domain_server=settings.DOMAIN_SERVER,
local_ip_server=settings.LOCAL_IP_SERVER,
host_port=settings.SERVER_HOST_PORT,
conf=conf,
default_position = default_multiwell.position or 'HD',
export_destination=settings.EXPORT_DESTINATIONS,
**ctx
)
@login_required
@user_passes_test(is_staff_or_admin)
def admin_view(request):
return render(request, "scanner/iframe.html", context=global_context(request, link='/admin/'))
@login_required
def admin_session_view(request):
return render(request, "scanner/iframe.html", context=global_context(request, link='/admin/scanner/session/'))
@login_required
def admin_experiment_view(request):
return render(request, "scanner/iframe.html", context=global_context(request, link='/admin/scanner/experiment/'))
@login_required
def admin_experimentconfig_view(request):
return render(request, "scanner/iframe.html", context=global_context(request, link='/admin/planarian/experimentconfig/'))
@login_required
def admin_periodictask_view(request):
return render(request, "scanner/iframe.html", context=global_context(request, link='/admin/django_celery_beat/periodictask/'))
@login_required
@user_passes_test(is_staff_or_admin)
def reductstore_view(request):
return render(request, "scanner/redirection.html", context=global_context(request, link=f'http://{settings.DOMAIN_SERVER}:8383/'))
return render(request, "scanner/redirection.html", context=global_context(request, link=f'http://{settings.LOCAL_IP_SERVER}:8383/'))
@login_required
@user_passes_test(is_staff_or_admin)
def adminer_view(request):
return render(request, "scanner/redirection.html", context=global_context(request, link=f'http://{settings.DOMAIN_SERVER}/adminer/'))
return render(request, "scanner/redirection.html", context=global_context(request, link=f'http://{settings.LOCAL_IP_SERVER}/adminer/'))
@login_required
@user_passes_test(is_staff_or_admin)
def portainer_view(request):
return render(request, "scanner/redirection.html", context=global_context(request, link=f'http://{settings.DOMAIN_SERVER}:9000/'))
return render(request, "scanner/redirection.html", context=global_context(request, link=f'http://{settings.LOCAL_IP_SERVER}:9000/'))
@login_required
@user_passes_test(is_staff_or_admin)
def supervisor_view(request):
return render(request, "scanner/redirection.html", context=global_context(request, link=f'http://{settings.DOMAIN_SERVER}:9001/'))
return render(request, "scanner/redirection.html", context=global_context(request, link=f'http://{settings.LOCAL_IP_SERVER}:9001/'))
@login_required
@user_passes_test(is_staff_or_admin)
def supervisor_worker(request):
return render(request, "scanner/redirection.html", context=global_context(request, link=f'http://{settings.DOMAIN_SERVER}:9001/logtail/test_tube:services'))
return render(request, "scanner/redirection.html", context=global_context(request, link=f'http://{settings.LOCAL_IP_SERVER}:9001/logtail/test_tube:services'))
@login_required
@user_passes_test(is_staff_or_admin)
def supervisor_scheduler(request):
return render(request, "scanner/redirection.html", context=global_context(request, link=f'http://{settings.DOMAIN_SERVER}:9001/logtail/test_tube:planification'))
return render(request, "scanner/redirection.html", context=global_context(request, link=f'http://{settings.LOCAL_IP_SERVER}:9001/logtail/test_tube:planification'))
def documentation(request, template=None):
ctx = dict(
choice_title=_("Documentation")
)
return render(request, f"docs/{template}.html", context=global_context(request, **ctx))
## Mainboard
@login_required
def main_view(request):
def scanning_view(request):
ctx = dict(
ws_route=settings.SCANNER_WEBSOCKET_ROUTE,
columns=1,
sessions=models.Session.objects.filter(active=True).all(),
choice_title=_("Balayage multi-puits")
)
return render(request, "scanner/main.html", context=global_context(request, **ctx))
return render(request, "scanner/scanning.html", context=global_context(request, **ctx))
## Calibration
@login_required
@@ -97,6 +146,17 @@ def calibration_view(request):
return render(request, "scanner/calibration.html", context=global_context(request, **ctx))
def get_not_active_experiments(session, expid=None):
if session:
experiments = models.SessionExperiment.experiment_by_session(session.id, active=False) or []
if experiments and not expid:
return experiments, experiments[0]
for e in experiments:
if expid == str(e.id):
return experiments, e
return [], None
## images
def get_images(uuid):
oldest, latest, n, images = 0, 0, 0, []
@@ -124,35 +184,82 @@ def get_images(uuid):
@login_required
def images_view(request):
cursid, duration, uuid, images = 0, 0, "", []
cursid, expid, duration, uuid, images = 0, None, 0, "", []
if request.method == 'POST':
cursid = request.POST.get('_sid')
expid = request.POST.get('_expid')
uuid = request.POST.get('_multiwell')
duration, images = get_images(uuid)
current_session = models.Session.get_session(cursid)
experiments, current_experiment = get_not_active_experiments(current_session, expid)
ctx = dict(
choice_title=_("Gestionnaire d'images"),
sessions=models.Session.objects.filter(active=False).all(),
experiments=models.SessionExperiment.experiment_by_session(cursid, active=False),
cursid=int(cursid),
experiments=experiments or [],
current_session=current_session,
current_experiment=current_experiment,
images=images,
uuid=uuid,
duration=duration,
)
return render(request, "scanner/images.html", context=global_context(request, **ctx))
@login_required
def export_medias(request):
cursid = 0
if request.method == 'POST':
cursid = request.POST.get('_sid')
valid = request.POST.get('valid')
if valid == 'ok':
try:
session = models.Session.objects.get(pk=cursid)
session.expected_export = timezone.now()
if not session.export_status == "running":
session.export_status = "running"
if session.export_task:
session.export_task.enabled = True
session.export_task.save()
session.save()
except Exception as e:
print("export_medias error", e)
current_session = models.Session.get_session(cursid)
ctx = dict(
choice_title=_("Exporter les fichiers médias"),
sessions=models.Session.objects.filter(active=False).all(),
current_session=current_session,
url=f'http://{settings.LOCAL_IP_SERVER}:9001/logtail/test_tube:services',
)
return render(request, "scanner/export_medias.html", context=global_context(request, **ctx))
## replay
@require_POST
@csrf_exempt
def download_api(request):
data = json.loads(request.body.decode() or "{}")
try:
action = data.get("action")
if action=='download':
uuid, dt_start, dt_stop, frame_rate = data.get("uuid"), data.get("dt_start"), data.get("dt_stop"), data.get("fps")
return download_video.delay(uuid, dt_start, dt_stop, frame_rate=frame_rate) # @UndefinedVariable
else:
return JsonResponse({"state": False})
task = download_video.delay(uuid, dt_start, dt_stop, frame_rate=frame_rate) # @UndefinedVariable
result = task.get(timeout=300)
if result.get('success'):
video_path = result.get('video_path')
if not os.path.exists(video_path):
raise Exception(f"File not created: {video_path}")
response = FileResponse(open(video_path, 'rb'), content_type='video/mp4')
response['Content-Disposition'] = f'attachment; filename="{video_path}"'
response['Content-Length'] = os.path.getsize(video_path)
os.remove(video_path)
return response
return JsonResponse(result)
except Exception as e:
print("download_api error", e)
return JsonResponse({"state": False, "success": False, "msg": str(_("Erreur d'exportation")), })
def get_video(uuid):
@@ -164,20 +271,24 @@ def get_video(uuid):
@login_required
def replay_view(request):
cursid, oldest, latest, uuid, image = 0, 0, 0, "", ""
cursid, expid, oldest, latest, uuid, image = 0, None, 0, 0, "", ""
if request.method == 'POST':
cursid = request.POST.get('_sid')
expid = request.POST.get('_expid')
uuid = request.POST.get('_multiwell')
if uuid:
oldest, latest, image = get_video(uuid)
current_session = models.Session.get_session(cursid)
experiments, current_experiment = get_not_active_experiments(current_session, expid)
ctx = dict(
choice_title=_("Gestionnaire de vidéos"),
ws_route=settings.REPLAY_WEBSOCKET_ROUTE,
sessions=models.Session.objects.filter(active=False).all(),
experiments=models.SessionExperiment.experiment_by_session(cursid, active=False),
cursid=int(cursid),
experiments=experiments or [],
current_session=current_session,
current_experiment=current_experiment,
image=image,
uuid=uuid,
oldest=oldest,
@@ -185,20 +296,20 @@ def replay_view(request):
)
return render(request, "scanner/replay.html", context=global_context(request, **ctx))
@require_POST
@csrf_exempt
def export_api(request):
data = json.loads(request.body.decode() or "{}")
session_id = data.get("sid")
action = data.get("action")
try:
if action == 'export_images':
job_zip = export_all_images(session_id)
return JsonResponse({"state": True, "tasks": job_zip})
export_all_images(session_id)
return JsonResponse({"success": True, "msg": str(_("Images en cours de téléchargement"))})
elif action == 'export_videos':
job_mp4 = export_all_videos(session_id)
return JsonResponse({"state": True, "tasks": job_mp4})
else:
return JsonResponse({"state": False})
export_all_videos(session_id)
return JsonResponse({"success": True, "msg": str(_("Vidéos en cours de téléchargement"))})
except:
return JsonResponse({"state": False, "success": False, "msg": str(_("Erreur d'exportation")), })
+65
View File
@@ -0,0 +1,65 @@
#!.trans/bin/python
'''
Created on 11 mai 2025
## pip install argostranslate polib
@author: denis
'''
import argparse
import os
import polib
import argostranslate.package
import argostranslate.translate
DJANGO_PROJECT = "test_tube_scanner"
def install_translation_model(from_lang="en", to_lang="fr"):
print("Cheching translation model...")
argostranslate.package.update_package_index()
available_packages = argostranslate.package.get_available_packages()
try:
package_to_install = next(
p for p in available_packages if p.from_code == from_lang and p.to_code == to_lang
)
print(f"Loading model {from_lang} >> {to_lang}...")
argostranslate.package.install_from_path(package_to_install.download())
print("Installation model ")
except StopIteration:
print("No models found for this language pair.")
exit(1)
def translate_po_file(input_path, output_path, from_lang="en", to_lang="fr"):
print(f"Loading file {input_path}...")
po = polib.pofile(input_path)
print("Start traduction...")
for entry in po:
if entry.msgstr.strip() == "" and entry.msgid.strip():
try:
translation = argostranslate.translate.translate(entry.msgid, from_lang, to_lang)
entry.msgstr = translation
except Exception as e:
print(f"Translation error: {entry.msgid}\n{e}")
continue
po.save(output_path)
print(f"End of translation. Output file in: {output_path}")
def main(app, from_lang, to_lang):
INPUT_FILE = f'{app}/locale/{from_lang}/LC_MESSAGES/django.po'
OUTPUT_FILE = f'{app}/locale/{to_lang}/LC_MESSAGES/django.po'
install_translation_model(from_lang, to_lang)
translate_po_file(INPUT_FILE, OUTPUT_FILE, from_lang, to_lang)
if __name__ == "__main__":
parser = argparse.ArgumentParser(description="Translation for Django")
parser.add_argument("--app", type=str, default='home', help="Django application name")
parser.add_argument("--from_lang", type=str, default="fr", help="From language")
parser.add_argument("--to_lang", type=str, default='en', help="To language", required=True)
args = parser.parse_args()
main(f'{DJANGO_PROJECT}/{args.app}', args.from_lang, args.to_lang)
exit(0)