calibration

test_tube_scanner/home/settings.py

@@ -396,9 +396,11 @@ EXPORT_DESTINATIONS = ["local", "remote"]
 
 
 TRACKER_TUBE_AXIS = "vertical"
-TRACKER_MIN_AREA = 8           # surface min planaire px x px
+TRACKER_MIN_AREA = 20                # surface min planaire px x px
-TRACKER_MAX_AREA_RATIO = 0.1   # 5% de la frame = surface max acceptable
+TRACKER_MAX_AREA_RATIO = 0.1        # 5% de la frame = surface max acceptable
-TRACKER_MAX_PLANARIANS = 3
+TRACKER_MAX_PLANARIANS = 1          
+TRACKER_MERGE_KERNEL_SIZE = 15      # augmenter si fragments résiduels
+TRACKER_MIN_CONTOUR_DIST_PX = 40    # augmenter si IDs multiples persistent
 
 
 CALIBRATION_AUTO_DURATION = 45.0

test_tube_scanner/modules/capture_interface.py

@@ -51,6 +51,16 @@ class VideoCaptureInterface(abc.ABC):
     # Cadence par défaut en images par seconde
     DEFAULT_FPS: float = 5.0
 
+    DEFAULT_TRACKER_CONFIG = dict(
+        tube_axis = settings.TRACKER_TUBE_AXIS,
+        min_area_px = settings.TRACKER_MIN_AREA,
+        max_area_ratio = settings.TRACKER_MAX_AREA_RATIO,
+        max_planarians = settings.TRACKER_MAX_PLANARIANS,
+        merge_kernel_size = settings.TRACKER_MERGE_KERNEL_SIZE,
+        min_contour_dist_px = settings.TRACKER_MIN_CONTOUR_DIST_PX,       
+    )
+    
+
     def __init__(self, fps: float = DEFAULT_FPS, use_tracking: bool = False, display=None, parent=None, jpeg_quality=85):
         """
         Initialise l'interface de capture.
@@ -75,13 +85,9 @@ class VideoCaptureInterface(abc.ABC):
         self._tracker = None
         self._metrics = None
         self._paramss = None
-        if use_tracking:
+
-            self._tracker = PlanarianTracker(
+        # Tracker générique, pour simulation
-                tube_axis = settings.TRACKER_TUBE_AXIS,
+        self.on_test_well_change(**self.DEFAULT_TRACKER_CONFIG)
-                min_area_px = settings.TRACKER_MIN_AREA,
-                max_area_ratio = settings.TRACKER_MAX_AREA_RATIO,
-                max_planarians = settings.TRACKER_MAX_PLANARIANS,
-            )
 
         self._aligner = TubeAligner(
             grbl_threshold_px = 20,      # au-delà → correction GRBL
@@ -91,22 +97,31 @@ class VideoCaptureInterface(abc.ABC):
         self.align_detection   = None     # résultat du test
 
 
+    def on_test_well_change(self, **cfg):
+        if self.use_tracking and cfg:
+            logger.warning(f"tracking conf: {cfg}")
+            self._tracker = PlanarianTracker(**cfg)
+    
+
     def on_well_change(self, cfg):
         """
         Appelé par le CNC lors du changement de puits.
         Réinitialise le fond appris et l'état inter-frame du tracker.
         Construit les métriques aussi
         """
-        if  self.use_tracking and self._tracker:
+        if not self.use_tracking:
-            self._tracker.reset()
+            return
-            self._params = ExperimentParams(cfg.to_params_dict())
+
-            self._metrics = self._params.build_metrics()
+        self._params = ExperimentParams(cfg.to_params_dict())
-            self._tracker = PlanarianTracker(
+        self._metrics = self._params.build_metrics()
-                tube_axis      = self._params.tube_axis,
+        self._tracker = PlanarianTracker(
-                min_area_px    = self._params.min_area_px,
+            tube_axis      = self._params.tube_axis,
-                max_area_ratio = self._params.max_area_ratio,
+            min_area_px    = self._params.min_area_px,
-                max_planarians = self._params.planarian_count,
+            max_area_ratio = self._params.max_area_ratio,
-            )
+            max_planarians = self._params.planarian_count,
+            merge_kernel_size = settings.TRACKER_MERGE_KERNEL_SIZE,
+            min_contour_dist_px = settings.TRACKER_MIN_CONTOUR_DIST_PX,
+        )
 
 
     # ------------------------------------------------------------------
@@ -262,7 +277,7 @@ class VideoCaptureInterface(abc.ABC):
                     frame = annotated if annotated is not None else frame
                 ##
                 # mode racking
-                if self._tracker is not None:    
+                if self.use_tracking:
                     ts = datetime.now(timezone.utc).timestamp()
                     frame, metrics = self._tracker.process(frame, ts)
                 ##

test_tube_scanner/modules/planarian_tracker.py

@@ -4,22 +4,13 @@ modules/planarian_tracker.py
 Détection et suivi multi-individus de planaires dans un tube.
 Supporte de 1 à MAX_PLANARIANS planaires par tube.
 
-Etat inter-frame indépendant par individu : position, timestamp, compteur de perte (lost), flag active. 
-Quand un individu n'est pas détecté pendant MAX_LOST_FRAMES (5) frames consécutives, il est marqué perdu et son slot se libère.
-
-Algorithme hongrois (scipy.optimize.linear_sum_assignment) dans _hungarian_assign() 
-  — construit une matrice de coût distance euclidienne entre les slots actifs et les nouvelles détections, puis trouve l'association de coût minimal. 
-Une association est rejetée si la distance dépasse MAX_ASSOC_DIST_PX (80px) 
-  — évite les sauts aberrants entre planaires proches.
-
-
 Stratégie :
     - Soustraction de fond MOG2 (léger sur Raspberry Pi 4)
     - Détection de tous les contours valides (surface >= min_area_px)
     - Association frame-à-frame par distance euclidienne minimale
       via algorithme hongrois (scipy.optimize.linear_sum_assignment)
     - Un état inter-frame indépendant par individu (PlanarianState)
-    - Retourne une liste de résultats, un par individu suivi: champ planarian_id (index 0-based).
+    - Retourne une liste de résultats, un par individu suivi
 
 Created on 25 avr. 2026
 @author: denis
@@ -171,10 +162,12 @@ class PlanarianTracker:
 
     def __init__(
         self,
-        tube_axis:      str = "vertical",
+        tube_axis:          str   = "vertical",
-        min_area_px:    int = 20,
+        min_area_px:        int   = 20,
-        max_area_ratio: float = 0.10,
+        max_area_ratio:     float = 0.10,
-        max_planarians: int = 1,
+        max_planarians:     int   = 1,
+        merge_kernel_size:  int   = 15,
+        min_contour_dist_px:int   = 40,
     ):
         """
         Args:
@@ -182,7 +175,11 @@ class PlanarianTracker:
             min_area_px    : surface minimale d'un contour pour être considéré valide (px²)
             max_area_ratio : surface maximale d'un contour en fraction de la frame (défaut 10%)
                              filtre les faux positifs du fond non encore appris par MOG2
-            max_planarians : nombre maximum de planaires à suivre simultanément (1-10)
+            max_planarians      : nombre maximum de planaires à suivre simultanément (1-10)
+            merge_kernel_size   : taille du kernel elliptique de fusion des fragments (px).
+                                  Régler ≈ largeur du planaire en pixels. Défaut : 15.
+            min_contour_dist_px : distance min entre deux contours pour les considérer
+                                  comme individus distincts. Défaut : 40px.
         """
         self.tube_axis      = tube_axis
         self.min_area_px    = min_area_px
@@ -192,6 +189,16 @@ class PlanarianTracker:
         # Un état inter-frame par slot individu
         self._states = [PlanarianState(i) for i in range(self.max_planarians)]
 
+        # Taille du kernel de fusion morphologique (pixels) —
+        # doit être proche de la largeur du planaire en pixels.
+        # Trop petit : fragments non fusionnés → IDs multiples.
+        # Trop grand : deux planaires proches fusionnés en un seul.
+        self.merge_kernel_size    = merge_kernel_size
+
+        # Distance minimale en pixels entre deux contours distincts.
+        # En-dessous : le plus petit est considéré comme fragment du plus grand.
+        self.min_contour_dist_px  = min_contour_dist_px
+
         # Soustracteur de fond adaptatif MOG2
         self._bg_sub = self._make_bg_sub()
 
@@ -217,6 +224,8 @@ class PlanarianTracker:
             s.reset()
         self._bg_sub       = self._make_bg_sub()
         self._warmup_count = 0
+        # Les paramètres morphologiques (merge_kernel_size, min_contour_dist_px)
+        # sont conservés — ils ne dépendent pas du puits
 
     # ------------------------------------------------------------------ #
     # Interface principale
@@ -253,9 +262,19 @@ class PlanarianTracker:
         gray    = cv2.cvtColor(frame, cv2.COLOR_BGR2GRAY)
         fg_mask = self._bg_sub.apply(gray)
 
-        kernel  = np.ones((3, 3), np.uint8)
+        # --- Morphologie : fusion des fragments du corps ---
-        fg_mask = cv2.morphologyEx(fg_mask, cv2.MORPH_OPEN,  kernel)
+        # Un planaire ondulant est souvent segmenté en plusieurs contours
-        fg_mask = cv2.morphologyEx(fg_mask, cv2.MORPH_CLOSE, kernel)
+        # (tête, milieu, queue). La dilatation fusionne les fragments proches
+        # avant la détection des contours.
+        # Kernel 3×3 : supprime le bruit fin (OPEN)
+        # Kernel merge_kernel : fusionne les fragments du corps (CLOSE + DILATE)
+        noise_kernel = np.ones((3, 3), np.uint8)
+        merge_kernel  = cv2.getStructuringElement(
+            cv2.MORPH_ELLIPSE, (self.merge_kernel_size, self.merge_kernel_size)
+        )
+        fg_mask = cv2.morphologyEx(fg_mask, cv2.MORPH_OPEN,   noise_kernel)
+        fg_mask = cv2.morphologyEx(fg_mask, cv2.MORPH_CLOSE,  merge_kernel)
+        fg_mask = cv2.dilate(fg_mask, merge_kernel, iterations=1)
 
         # Warmup MOG2 : les premières WARMUP_FRAMES frames retournent du bruit
         # (fond non encore appris) — on les alimente mais on ne détecte rien
@@ -279,8 +298,33 @@ class PlanarianTracker:
             reverse=True,
         )
 
+        # --- Suppression des fragments résiduels trop proches ---
+        # Si plusieurs contours valides ont leur centre à moins de
+        # min_contour_dist_px les uns des autres, seul le plus grand est conservé.
+        # Évite les cas où la fusion morphologique est incomplète.
+        filtered = []
+        for c in valid:
+            M = cv2.moments(c)
+            if M["m00"] == 0:
+                continue
+            cx_c = int(M["m10"] / M["m00"])
+            cy_c = int(M["m01"] / M["m00"])
+            too_close = False
+            for kept in filtered:
+                Mk = cv2.moments(kept)
+                if Mk["m00"] == 0:
+                    continue
+                cx_k = int(Mk["m10"] / Mk["m00"])
+                cy_k = int(Mk["m01"] / Mk["m00"])
+                dist = np.sqrt((cx_c - cx_k)**2 + (cy_c - cy_k)**2)
+                if dist < self.min_contour_dist_px:
+                    too_close = True
+                    break
+            if not too_close:
+                filtered.append(c)
+
         # Limiter au nombre maximum de planaires attendus
-        valid = valid[:self.max_planarians]
+        valid = filtered[:self.max_planarians]
 
         # --- Calcul des centres de masse des contours détectés ---
         detections = []   # liste de (cx, cy, area, contour)
@@ -489,4 +533,3 @@ class PlanarianTracker:
             "axial_pos":    0.0,
             "timestamp":    ts,
         }
-        

test_tube_scanner/planarian/models.py

@@ -65,8 +65,9 @@ class ExperimentConfig(models.Model):
     )
     
     max_area_ratio = models.FloatField(
-        default=0.05,
+        default=0.10,
-        verbose_name=_("Filtre surface max acceptable"),
+        verbose_name=_("Surface max contour (fraction de la frame)"),
+        help_text=_("Ratio de la surface du puits, ex: 0.10 pour 10%"),
     )
         
     planarian_count = models.IntegerField(
@@ -131,6 +132,7 @@ class ExperimentConfig(models.Model):
             "thresh_mobile":         self.thresh_mobile,
             "tube_axis":             self.tube_axis,
             "min_area_px":           self.min_area_px,
+            "max_area_ratio":        self.max_area_ratio,
             "planarian_count":       self.planarian_count,
             "thigmotaxis_wall_dist_mm": self.thigmotaxis_wall_dist_mm,
             "photo_mode":            self.photo_mode,

test_tube_scanner/scanner/admin.py

@@ -1,18 +1,65 @@
+from django.utils.translation import gettext_lazy as _
 from django.contrib import admin
 from django.db.models import Q
 from . import models
 
-
 class WellAdmin(admin.ModelAdmin):
     model = models.Well
     list_display = ('name', 'author',)
 
 class ConfigurationAdmin(admin.ModelAdmin):
     list_display = ('name', 'author', 'capture_type', 'video_width_capture', 'video_height_capture', 'video_frame_rate', 'active',)
+    
+    
+    fieldsets = (
+        (_("Identification"), {
+            "fields": ("name", "author", "active"),
+        }),
+        (_("Dashboard"), {
+            "fields": ("sidebar_width", "default_grid_columns",),"classes": ("collapse",),
+        }),
+        (_("opencv"), {
+            "fields": ("opencv_fourcc_format", "opencv_video_type"),"classes": ("collapse",),
+        }),
+        (_("Grbl"), {
+            "fields": ("grbl_xmax", "grbl_ymax"),            
+            "classes": ("collapse",),
+        }),
+        (_("Camera"), {
+            "fields": ("capture_type", "webcam_device_index", "image_quality", "video_jpeg_quality", "video_frame_rate", "video_width_capture", "video_height_capture"),
+            "classes": ("collapse",),
+        }),
+        (_("Calibration"), {
+            "fields": ("calibration_crop_radius", "calibration_default_multiwell", "calibration_default_feed", "calibration_default_step", "calibration_default_duration"),
+            "classes": ("collapse",),
+        }),
+        (_("Tracking"), {
+            "fields": ("tracking", "min_area_px", "max_area_ratio", "max_planarians", "merge_kernel_size", "min_contour_dist_px"),
+            "classes": ("collapse",),
+        }),
+
+    
+    )
 
 class MultiWellAdmin(admin.ModelAdmin):
     list_filter = ('author', )
     list_display = ('label', 'position', 'author', 'order', 'xbase', 'ybase', 'duration', 'feed', 'default', 'well_position', 'active',)
+    
+    fieldsets = (
+        (_("Identification"), {
+            "fields": ("label", "author", "position", "default", "active"),
+        }),
+        (_("Géométrie"), {
+            "fields": ("cols", "rows", "diameter", "row_def", "row_order"),"classes": ("collapse",),
+        }),
+        (_("Déplacement"), {
+            "fields": ("order", "duration", "xbase", "ybase", "dx", "dy", "feed"),"classes": ("collapse",),
+        }),
+        (_("Positions générées"), {
+            "fields": ("well_position",),
+        }),
+
+    )
 
 class WellPositionAdmin(admin.ModelAdmin):
     list_filter = ('author', 'multiwell')
@@ -28,6 +75,7 @@ class ExperimentAdmin(admin.ModelAdmin):
     list_filter = ('session_experiments__session', 'author', )
     list_display = ('title', 'author',  'multiwell', 'created', 'started', 'finished')
     readonly_fields = ('created',  'started',  'finished', )
+    
 
 class SessionExperimentInlineAdmin(admin.TabularInline):
     model = models.SessionExperiment

test_tube_scanner/scanner/constants.py

@@ -28,8 +28,13 @@ class DefaultConfig:
     calibration_default_step: float = 1.0
     calibration_default_duration: float = 3.0
     tracking: bool = False 
+    min_area_px: int = 20
+    max_area_ratio: float = 0.10
+    max_planarians: int = 1
+    merge_kernel_size: int = 15
+    min_contour_dist_px: int = 40
+   
     
-
 class ScannerConstants:
     
     def __init__(self):

test_tube_scanner/scanner/models.py

@@ -66,6 +66,13 @@ class Configuration(models.Model):
     calibration_default_duration = models.FloatField(_("Duruée calibration"), help_text=_("Durée de pose entre chaque puits en s"), default=3.0)
     # tracking
     tracking = models.BooleanField(_("Suivi"), help_text=_("Suivi et analyse des planaires"), default=False)
+    
+    min_area_px = models.PositiveIntegerField(_("Surface minimale"), help_text=_("surface minimale d'un contour pour être considéré valide (px²)"), default=20)
+    max_area_ratio = models.FloatField(_("surface maximale "), help_text=_("surface maximale d'un contour en fraction de la frame (défaut 10%)"), default=0.10)
+    max_planarians = models.PositiveIntegerField(_("Max planaire"), help_text=_("nombre maximum de planaires à suivre simultanément (1-10)"), default=1)
+    merge_kernel_size = models.PositiveIntegerField(_("Taille du kernel"), help_text=_("taille du kernel elliptique de fusion des fragments (px)"), default=15)
+    min_contour_dist_px = models.PositiveIntegerField(_("Distance <contour>"), help_text=_("Distance min entre deux contours pour les considérer comme individus distincts. Défaut : 40px."), default=40)
+   
     #
     active = models.BooleanField(_("Actif"), default=False)
     
@@ -97,18 +104,18 @@ class Well(models.Model):
 
 
 class MultiWell(models.Model):
+    # Identification
     label =  models.CharField(_("Label"), help_text=_("Label du multi-puit"), max_length=100, null=True, blank=True)
     author = models.ForeignKey(User, on_delete=models.CASCADE, verbose_name="Auteur", null=True, blank=True)
     position = models.CharField(_("Position"), help_text=_('Position du multi-puits sur la table'), unique=True, max_length=8, choices=MULTIWELL_POSITION, null=True, blank=False)
     default = models.BooleanField(_("Par défaut"), help_text=_('Multi-puit par défaut'), default=False)
-    
+    # Configuration   
     cols = models.PositiveSmallIntegerField(_("Colonnes"), help_text=_('Nombre de colonnes'), blank=False, default=6)
     rows = models.PositiveSmallIntegerField(_("Lignes"), help_text=_('Nombre de lignes'), blank=False, default=4)  
     diameter = models.FloatField(_("Diamètre"), help_text=_('Diamètre des tubes en mm'), blank=False, default=16.0)
-      
     row_def = models.CharField(_("Définition"), help_text=_('Définition des lignes'), max_length=16, null=True, blank=False, default="A,B,C,D")
     row_order = models.CharField(_("Ordre ligne"), help_text=_('Ordre ligne de puit. Lecture en serpentin dans le sens des +- X'), max_length=16, null=True, blank=False, default="D,C,B,A")
-
+    # Balayage
     order = models.PositiveSmallIntegerField(_("Ordre"), help_text=_('Ordre de lecture du multi-puit'), blank=False, default=0)
     duration = models.PositiveIntegerField(_("Durée"), help_text=_('Durée du film en secondes'), blank=False, default=120)
     xbase = models.FloatField(_("Origine X"), help_text=_('Base origine X en mm'), blank=False, default=50.0)

test_tube_scanner/scanner/multiwell.py

@@ -78,6 +78,7 @@ class MultiWellManager:
     def __init__(self, process):
         self.process = process
         self.cnc_controller = process.grbl
+        
         self.stop_playing = Event()
         self.well_iterator = None       
         self.multiwel = None
@@ -85,6 +86,15 @@ class MultiWellManager:
         self.set_multiwell()
         self.scan_thread = None
         self.test_thread = None
+        self.tracker_config = dict(
+            tube_axis = settings.TRACKER_TUBE_AXIS,
+            min_area_px = self.process.conf.min_area_px,
+            max_area_ratio = self.process.conf.max_area_ratio,
+            max_planarians = self.process.conf.max_planarians,
+            merge_kernel_size = self.process.conf.merge_kernel_size,
+            min_contour_dist_px = self.process.conf.min_contour_dist_px,
+        )      
+        
 
     def set_default_values(self, feed=None, step=None, duration=None):
         self._feed = feed or self.process.conf.calibration_default_feed

test_tube_scanner/scanner/process.py

@@ -467,7 +467,13 @@ class ScannerProcess(Task):
                         elif topic == 'set_well':
                             msg = self.manager.set_well_position()
                             self._send(**msg)
-                 
+                            
+                        elif topic in ['min_area_px', 'max_area_ratio', 'max_planarians', 'merge_kernel_size', 'min_contour_dist_px']:
+                            value = int(value) if topic in ['min_area_px', 'max_planarians', 'merge_kernel_size', 'min_contour_dist_px'] else float(value)
+                            self.manager.tracker_config[topic] = value
+                            self.cam.on_test_well_change(**self.manager.tracker_config)
+                            self._send(state=topic, msg=f"Value changed {value}")                            
+                            
                         self._send(
                             xbase=self.manager.xbase, 
                             ybase=self.manager.ybase, 

test_tube_scanner/scanner/static/scanner/css/calibration.css

@@ -10,5 +10,3 @@
   align-items: center; 
 }
 
-
-

test_tube_scanner/scanner/static/scanner/js/calibration.js

@@ -42,6 +42,13 @@ class ScannerManager {
         this.crop        = options.crop; 
         this.crop_radius = options.crop_radius;
         this.calib_auto  = options.calib_auto;
+        
+        this.min_area_px = options.min_area_px;
+        this.max_area_ratio = options.max_area_ratio;
+        this.max_planarians = options.max_planarians;
+        this.merge_kernel_size = options.merge_kernel_size;
+        this.min_contour_dist_px = options.min_contour_dist_px;
+        
     }
     
     init_controls() {       
@@ -71,6 +78,13 @@ class ScannerManager {
         this.calib_center.addEventListener('click', (e) => { this._send({ type: 'calibrate', topic: "center" }); });
         this.calib_auto.addEventListener('click',   (e) => { this._send({ type: 'calibrate', topic: "auto" }); });
         this.halt.addEventListener('click',         (e) => { this._send({ type: 'calibrate', topic: "halt" }); });
+        
+        this.min_area_px.addEventListener('change',         (e) => { this._send({ type: 'calibrate', topic: "min_area_px", value: e.target.value }); });
+        this.max_area_ratio.addEventListener('change',      (e) => { this._send({ type: 'calibrate', topic: "max_area_ratio", value: e.target.value }); });
+        this.max_planarians.addEventListener('change',      (e) => { this._send({ type: 'calibrate', topic: "max_planarians",  value: e.target.value}); });
+        this.merge_kernel_size.addEventListener('change',   (e) => { this._send({ type: 'calibrate', topic: "merge_kernel_size",  value: e.target.value}); });
+        this.min_contour_dist_px.addEventListener('change', (e) => { this._send({ type: 'calibrate', topic: "min_contour_dist_px", value: e.target.value }); });
+        
     }
 
     registerSocket(socket)  {

test_tube_scanner/scanner/templates/scanner/calibration.html

@@ -133,12 +133,12 @@
 	    </div>
         <div class="w3-row w3-row-padding">
             <div class="w3-half">
-	            <button id="_calib_debug" class="w3-button w3-dark-xlight w3-round-large w3-padding-1" title="{% trans 'Ce mode permet les réglages graphiques' %}">
+	            <button id="_calib_debug" class="w3-button w3-dark-xlight w3-round-large w3-padding-1 w3-block" title="{% trans 'Ce mode permet les réglages graphiques' %}">
 	                {% trans 'Debug' %}<br><i class="fa-solid fa-triangle-exclamation w3-text-amber w3-xlarge"></i>
 	            </button>                
             </div>   
             <div class="w3-half">
-	            <button id="_median" class="w3-button w3-dark-xlight w3-round-large w3-padding-1">
+	            <button id="_median" class="w3-button w3-dark-xlight w3-round-large w3-padding-1 w3-block">
 	                {% trans 'Axes' %}<br><i class="fa-solid fa-crosshairs w3-text-amber w3-xlarge"></i>
 	            </button>               
             </div>
@@ -148,7 +148,32 @@
 	            </button>               
             </div>
         </div>    
-        <div class="w3-row w3-row-padding "> 
+        {% if conf.tracking %}
+        <div class="w3-row w3-row-padding w3-light-grey w3-margin-1 w3-round w3-round-large"> 
+             <div class="w3-col">{% trans 'Configuration du tracking' %}</div>
+             <div class="w3-half">
+                <input id="_min_area_px" type="number" min="5" max="100" step="1" class="w3-round" value="{{ conf.min_area_px }}"
+                    title="{% trans 'surface minimale de contour pour être considéré valide (px carré)' %}"><br>{% trans 'Min contour' %}            
+            </div>       
+             <div class="w3-half">
+                <input id="_max_area_ratio" type="number" min="0.05" max="1.0" step="0.05" class="w3-round" value="{{ conf.max_area_ratio|stringformat:"s" }}"
+                    title="{% trans 'surface maximale de contour en fraction de la frame (défaut 10%)' %}"><br>{% trans 'Max contour' %}          
+            </div>
+             <div class="w3-half">
+                <input id="_merge_kernel_size" type="number" min="5" max="320" step="1" class="w3-round" value="{{ conf.merge_kernel_size }}"
+                    title="{% trans 'Taille du kernel elliptique de fusion des fragments (px)' %}"><br>{% trans 'Taille kernel' %}          
+            </div>           
+            <div class="w3-half">
+                <input id="_min_contour_dist_px" type="number" min="10" max="320" step="1" class="w3-round" value="{{ conf.min_contour_dist_px }}"
+                    title="{% trans 'Distance min entre deux contours pour les considérer comme individus distincts. Défaut: 40px' %}"><br>{% trans 'Distance min' %}          
+            </div>  
+            <div class="w3-half">
+                <input id="_max_planarians" type="number" min="1" max="10" step="1" class="w3-round" value="{{ conf.max_planarians }}"
+                    title="{% trans 'Nombre maximum de planaires à suivre simultanément (1-10)' %}"><br>{% trans 'Planaires' %}          
+            </div>              
+        </div>    
+        {% endif %}
+        <div class="w3-row w3-row-padding"> 
             <div class="w3-half w3-margin-top">
                 <span>{% trans 'Rayon' %} px</span><br>
                 <input id="_crop_radius" type="number" min="100" max="1200" step="1" class="w3-round w3-input" title="{% trans 'Rayon du recadrement' %}"
@@ -227,7 +252,12 @@
 	        well_btn    : sId("_well_btn"),  
             median      : sId("_median"),
             crop        : sId("_crop"),
-            crop_radius : sId("_crop_radius")
+            crop_radius : sId("_crop_radius"),
+            min_area_px : sId("_min_area_px"),
+            max_area_ratio : sId("_max_area_ratio"),
+            max_planarians : sId("_max_planarians"),
+            merge_kernel_size : sId("_merge_kernel_size"),
+            min_contour_dist_px : sId("_min_contour_dist_px")
         };          
     </script>
     <script src="/static/scanner/js/calibration.js"></script>