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Video plate capture: calibration, edge enhance, auto-detect well borders

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denis defolie
2026-06-03 17:56:23 +02:00
parent 4b42c03756
commit 9bb8fc1bce
58 changed files with 1699 additions and 274 deletions
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test_tube_scanner/scanner/templates/scanner/base.html
+2 -2
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@@ -133,10 +133,10 @@
</a>
<hr class="w3-bar-item divider w3-grey w3-margin-bottom">
{% endif %}
<a href="{% url 'scanner:scanning' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<a href="{% url 'scanner:scanning' %}" class="w3-bar-item w3-btn w3-hover-opacity w3-margin-bottom">
<i class="fa-solid fa-film w3-text-green w3-xlarge""></i> {% trans "Balayage multi-puits" %}
</a>
<div class="w3-bar-item w3-blue-grey"><i class="fa-solid fa-square-poll-vertical w3-text-amber"></i> {% trans "Résultats " %}</div>
<div class="w3-bar-item w3-border-top w3-center"><i class="fa-solid fa-square-poll-vertical w3-text-amber"></i> {% trans "Résultats " %}</div>
{% if conf.tracking %}
<a href="{% url 'planarian:export-csv' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-file-export w3-text-lime w3-xlarge"></i> {% trans "Export CSV des expériences" %}
test_tube_scanner/scanner/templates/scanner/calibration.html
+51 -31
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@@ -1,8 +1,14 @@
{% extends 'scanner/base.html' %}
{% load i18n home_tags scanner_tags %}
{% load i18n home_tags %}
{% block styles %}
{{ block.super }}
<style>
:root {
--well-columns: 3;
}
</style>
<link href="/static/scanner/css/calibration.css" rel="stylesheet">
{% endblock %}
{% block columns %}{% endblock %}
@@ -84,34 +90,36 @@
</button>
</div>
</div>
<div class="w3-row w3-row-padding">
<div id="_well_btn" class="w3-col w3-margin-bottom"></div>
<div class="w3-third">
<button id="_previous" class="w3-button w3-dark-xlight w3-round-large w3-padding-small">
<span class="w3-small">{% trans 'Précéd.' %}</span><br><i class="fa-solid fa-circle-left w3-xlarge"></i>
</button>
<div {% if capture_type == "file" %}class="w3-hide"{% endif %}>
<div class="w3-third">
<button id="_previous" class="w3-button w3-dark-xlight w3-round-large w3-padding-small">
<span class="w3-small">{% trans 'Précéd.' %}</span><br><i class="fa-solid fa-circle-left w3-xlarge"></i>
</button>
</div>
<div class="w3-third">
<button id="_calib_center" class="w3-button w3-dark-xlight w3-round-large w3-padding-small" title="{% trans 'Centrer manuellement' %}">
<span class="w3-small">{% trans 'Centrer' %}</span><br><i class="fa-regular fa-circle w3-xlarge w3-text-orange"></i>
</button>
</div>
<div class="w3-third">
<button id="_next" class="w3-button w3-dark-xlight w3-round-large w3-padding-small">
<span class="w3-small">{% trans 'Suivant' %}</span><br><i class="fa-solid fa-circle-right w3-xlarge"></i>
</button>
</div>
<div class="w3-col">
<button id="_calib_auto" class="w3-button w3-dark-xlight w3-round-large w3-margin-top w3-block"
title="{% trans 'Centrage auto et sauvegarde des positions' %}">
{% trans 'Calibrage auto' %}<br><i class="fa-solid fa-robot w3-text-orange w3-xlarge"></i>
</button>
</div>
</div>
<div class="w3-third">
<button id="_calib_center" class="w3-button w3-dark-xlight w3-round-large w3-padding-small" title="{% trans 'Centrer manuellement' %}">
<span class="w3-small">{% trans 'Centrer' %}</span><br><i class="fa-regular fa-circle w3-xlarge w3-text-orange"></i>
</button>
</div>
<div class="w3-third">
<button id="_next" class="w3-button w3-dark-xlight w3-round-large w3-padding-small">
<span class="w3-small">{% trans 'Suivant' %}</span><br><i class="fa-solid fa-circle-right w3-xlarge"></i>
</button>
</div>
<div class="w3-col">
<button id="_calib_auto" class="w3-button w3-dark-xlight w3-round-large w3-margin-top w3-block"
title="{% trans 'Centrage auto et sauvegarde des positions' %}">
{% trans 'Calibrage auto' %}<br><i class="fa-solid fa-robot w3-text-orange w3-xlarge"></i>
</button>
</div>
</div>
</div>
<div class="w3-col" style="width: 50%">
{% include 'scanner/scan-image.html' %}
<div class="w3-col" style="width: 50%; display: flex; align-items: center; justify-content: center;">
<img id="scan-img" class="w3-image">
</div>
<div class="w3-col w3-center" style="width: 25%">
<div class="w3-row w3-row-padding">
@@ -136,17 +144,27 @@
<div class="w3-half">
<button id="_calib_debug" class="w3-button w3-dark-xlight w3-round-large w3-padding-1 w3-block" title="{% trans 'Ce mode permet les réglages graphiques' %}">
<span class="debug">{% trans 'Debug' %}</span><br><i class="fa-solid fa-triangle-exclamation w3-text-amber w3-xlarge"></i>
</button>
</div>
</button>
</div>
<div class="w3-half">
<button id="_median" class="w3-button w3-dark-xlight w3-round-large w3-padding-1 w3-block">
<button id="_draw_debug" class="w3-button w3-dark-xlight w3-round-large w3-padding-1 w3-block" title="{% trans 'Afficher / masquer les annotations de détection' %}">
<span class="draw_debug" style="color:#0ff">{% trans 'Overlay' %}</span><br><i class="fa-solid fa-chart-simple w3-text-amber w3-xlarge"></i>
</button>
</div>
<div class="w3-half">
<button id="_median" class="w3-button w3-dark-xlight w3-round-large w3-padding-1 w3-margin-top-1 w3-block">
<span class="median">{% trans 'Axes' %}</span><br><i class="fa-solid fa-crosshairs w3-text-amber w3-xlarge"></i>
</button>
</button>
</div>
<div class="w3-half">
<button id="_edge_enhance" class="w3-button w3-dark-xlight w3-round-large w3-padding-1 w3-margin-top-1 w3-block" title="{% trans 'Mettre en évidence les bords du puit' %}">
<span class="edge_enhance">{% trans 'Contours' %}</span><br><i class="fa-solid fa-circle-dot w3-text-amber w3-xlarge"></i>
</button>
</div>
<div class="w3-col">
<button id="_crop" class="w3-button w3-dark-xlight w3-round-large w3-padding-small w3-margin-top w3-block" title="{% trans 'Ce mode actionne le pointage graphique' %}">
<span class="crop">{% trans 'Recadrer pour calibrer / suivre' %}</span><br><i class="fa-solid fa-crop w3-text-amber w3-xlarge"></i>
</button>
</button>
</div>
</div>
{% if conf.tracking and conf.tracking_setting %}
@@ -248,14 +266,16 @@
well : sId("_well"),
debug : sId("_debug"),
calib_debug : sId("_calib_debug"),
draw_debug : sId("_draw_debug"),
calib_auto : sId("_calib_auto"),
calib_center: sId("_calib_center"),
previous : sId("_previous"),
next : sId("_next"),
set_well : sId("_set_well"),
well_btn : sId("_well_btn"),
median : sId("_median"),
crop : sId("_crop"),
median : sId("_median"),
edge_enhance : sId("_edge_enhance"),
crop : sId("_crop"),
crop_radius : sId("_crop_radius"),
min_area_px : sId("_min_area_px"),
max_area_ratio : sId("_max_area_ratio"),
test_tube_scanner/scanner/templates/scanner/images.html
+1 -1
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@@ -1,5 +1,5 @@
{% extends 'scanner/base.html' %}
{% load i18n home_tags scanner_tags %}
{% load i18n home_tags %}
{% block styles %}
{{ block.super }}
test_tube_scanner/scanner/templates/scanner/replay.html
+1 -1
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@@ -1,5 +1,5 @@
{% extends 'scanner/base.html' %}
{% load i18n home_tags scanner_tags %}
{% load i18n home_tags %}
{% block styles %}
{{ block.super }}
test_tube_scanner/scanner/templates/scanner/scan-image.html
+2 -2
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@@ -12,7 +12,7 @@
<div>Ax pos: <span id="_axial_pos"></span></div>
</div-->
{#% endif %#}
<div class="w3-rest">
<img id="scan-img" class="w3-image">
<div class="w3-col">
<img id="scan-img" class="w3-image w3-margin-auto">
</div>
</div>
test_tube_scanner/scanner/templates/scanner/scanning.html
+14 -5
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@@ -3,6 +3,11 @@
{% block styles %}
{{ block.super }}
<style>
:root {
--well-columns: 6;
}
</style>
<link href="/static/scanner/css/scanning.css" rel="stylesheet">
{% endblock %}
{% block columns %}{% endblock %}
@@ -12,11 +17,15 @@
<div class="w3-col w3-center" style="width: 30%">
<div class="w3-col">
<div>{% trans "Choix de la session" %}</div>
<select id="_session" class="w3-select">
{% for s in sessions %}
<option value="{{ s.id }}">{{ s }}</option>
{% endfor %}
</select>
<form method="post" class="w3-bar-item" action="">
{% csrf_token %}
<select id="_session" name="_session" class="w3-select" onchange="this.form.submit()">
{% for s in sessions %}
<option value="{{ s.id }}" {% if s.id == cursid %}selected{% endif %}>{{ s }}</option>
{% endfor %}
</select>
</form>
</div>
<div class="w3-col">
<div class="w3-row w3-bold">