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Video plate capture: calibration, edge enhance, auto-detect well borders

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denis defolie
2026-06-03 17:56:23 +02:00
parent 4b42c03756
commit 9bb8fc1bce
58 changed files with 1699 additions and 274 deletions
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test_tube_scanner/planarian/views.py
+7 -7
View File
@@ -93,7 +93,7 @@ def export_metrics(request):
if action=='experiment_csv':
experiment = models.Experiment.objects.filter(pk=pid).first()
if experiment:
export_experiment_metrics_task.delay(experiment.id) # @UndefinedVariable
export_experiment_metrics_task.delay(experiment.pk) # @UndefinedVariable
return JsonResponse({"success": True, "msg": str(_("Métrics en cours de téléchargement"))})
if action=='session_csv':
if pid:
@@ -118,7 +118,7 @@ def export_csv_view(request):
experiment = session_context['current_experiment']
if valid == 'ok' and session and experiment:
well_name = request.POST.get('well')
uuid = models.get_uuid_from_session(session.id, experiment.multiwell.position, well_name)
uuid = models.get_uuid_from_session(session.pk, experiment.multiwell.position, well_name) # type: ignore[union-attr]
'''
csv_content, filename = export_csv(request, uuid)
if csv_content:
@@ -126,7 +126,7 @@ def export_csv_view(request):
response["Content-Disposition"] = f'attachment; filename="{filename}"'
return response'''
csv_content, n = export_csv_sync(
experiment=experiment.identifier,
experiment=experiment.identifier, # type: ignore[union-attr]
well=well_name,
uuid=uuid,
planarian=request.POST.get("planarian"),
@@ -136,7 +136,7 @@ def export_csv_view(request):
)
if csv_content:
filename = (
f"{experiment.identifier}_{well_name}-{request.POST.get('planarian')}_"
f"{experiment.identifier}_{well_name}-{request.POST.get('planarian')}_" # type: ignore[union-attr]
f"{request.POST.get('record_type')}.csv"
)
logger.info(f"Export CSV: {n} lignes, content size={len(csv_content)}")
@@ -223,8 +223,8 @@ def import_csv_view(request):
return import_csv(request, current_experiment, rows, overwrite)
except Exception as e:
messages.error(request, msg)
logger.error(msg)
messages.error(request, e)
logger.error(e)
ctx = { 'choice_title': _("Importer des configurations depuis un fichier CSV"), **session_context }
return render(request, "planarian/import_params.html", context=global_context(request, **ctx))
@@ -266,6 +266,6 @@ class TrackingDataView(View):
return JsonResponse({"count": len(records), "records": records})
def get_context_data(self, **kwargs):
context = super().get_context_data(**kwargs)
context = super().get_context_data(**kwargs) # type: ignore[attr-defined]
return global_context(self.request, choice_title=str(_("Métriques de tracking d'un planaire")), **context)