planarian

test_tube_scanner/modules/capture_interface.py

@@ -112,7 +112,9 @@ class VideoCaptureInterface(abc.ABC):
         if not self.use_tracking:
             return
         
-        self._params = ExperimentParams(cfg.to_params_dict())
+        params = self.DEFAULT_TRACKER_CONFIG if not cfg else cfg.to_params_dict()
+        
+        self._params = ExperimentParams(params)
         self._metrics = self._params.build_metrics()
         self._tracker = PlanarianTracker(
             tube_axis      = self._params.tube_axis,

test_tube_scanner/planarian/models.py

@@ -18,9 +18,9 @@ class ExperimentConfig(models.Model):
     author = models.ForeignKey(User, on_delete=models.CASCADE, verbose_name="Auteur", null=True, blank=True)
     
     # --- Identification ---
-    identifier = models.CharField( max_length=100, verbose_name=_("Identifiant d'expérience"), help_text=_("session_1-HD-2026-04-27"),  )
+    identifier = models.CharField( max_length=100, verbose_name=_("Identifiant d'expérience"), help_text=_("session_1-HD-2026-04-27"), null=True, blank=True )
-    experiment = models.ForeignKey(Experiment, verbose_name="Expérience", on_delete=models.CASCADE, related_name="experiment_well" , null=True, blank=True)
+    experiment = models.ForeignKey(Experiment, verbose_name="Expérience", on_delete=models.CASCADE, related_name="experiment_well", null=True, blank=False)
-    well = models.ForeignKey(Well, verbose_name="Puit", on_delete=models.CASCADE, related_name="well_experiment", null=True, blank=True )
+    well = models.ForeignKey(Well, verbose_name="Puit", on_delete=models.CASCADE, related_name="well_experiment", null=True, blank=False )
     description = models.TextField( blank=True, verbose_name=_("Description"), )
     created_at = models.DateTimeField(auto_now_add=True, verbose_name=_("Créé le"))
 
@@ -163,9 +163,6 @@ class ExperimentConfig(models.Model):
         session = self.get_session()
         dte = self.experiment.created.isoformat()[:19]
         self.identifier = f'{dte}-{session.id}-{self.experiment.id}-{self.experiment.multiwell.position}-{self.well.name}'      
-        
-        print(self.identifier)
-        
         super().save(*args, **kwargs)
         
         
@@ -180,6 +177,3 @@ def create_well_position(sender, instance, created, **kwargs):
         instance.fps = conf.video_frame_rate
         instance.save()        
 
-        
-        
-        

test_tube_scanner/planarian/templates/planarian/base.html

@@ -3,7 +3,8 @@
 
 {% block columns %}{% endblock %}
 
-{% block sidebar_list %}
+{#% block sidebar_list %#}
+<!--
     <a href="/"  class="w3-bar-item w3-btn w3-hover-opacity"><i class="fa-solid fa-house w3-text-orange w3-xlarge"></i> {% trans "Retour accueil" %}</a>
     <form method="post" class="w3-bar-item" action="">
         {% csrf_token %}
@@ -28,7 +29,8 @@
         <i class="fa-solid fa-film w3-text-green w3-xlarge""></i> {% trans "Balayage multi-puits" %}
     </a>
     {% endif %}
-{% endblock %}
+-->
+{#% endblock %#}
 
 {% block js_footer %}
     {{ block.super }}
@@ -46,7 +48,7 @@
 	                setTimeout(function() {
 	                    message.remove();
 	                }, 500);
-	            }, 5000); // 5 seconds
+	            }, 15000); // 15 seconds
 	        });
 	    });
 	</script>

test_tube_scanner/planarian/templates/planarian/experiment_list.html

@@ -2,7 +2,7 @@
 {% load i18n home_tags scanner_tags %}
 
 {% block content %}
-<div class="w3-container w3-padding-32" style="max-width:1200px; margin:auto;">
+<div class="w3-container w3-padding" style="max-width:1200px; margin:auto;">
 
     <!-- En-tête -->
     <div class="w3-panel w3-teal w3-round-large w3-padding-16 w3-margin-bottom">
@@ -24,11 +24,12 @@
 
     <!-- Messages Django -->
     {% for message in messages %}
-    <div class="w3-panel w3-round
+    <div class="w3-panel w3-round alert
         {% if message.tags == 'success' %}w3-green
         {% elif message.tags == 'error'   %}w3-red
         {% elif message.tags == 'warning' %}w3-orange
         {% else %}w3-blue{% endif %}">
+        <button class="w3-btn w3-right w3-bold w3-black w3-round w3-margin" onclick="s('.alert').remove()">X</button>
         <p>{{ message }}</p>
     </div>
     {% endfor %}

test_tube_scanner/planarian/views.py

@@ -68,11 +68,19 @@ class ExperimentConfigListView(ListView):
     context_object_name = "configs"
     ordering            = ["-created_at"]
     
+    '''
+    def get_queryset(self):
+        # Récupérer le queryset de base
+        queryset = ExperimentConfig.objects.filter(experiment__session_experiments__isnull=False).select_related()
+        return queryset'''
+    
+    
     def get_context_data(self, **kwargs):
         context = super().get_context_data(**kwargs)
         return global_context(self.request, **context)
     
     
+
 # ---------------------------------------------------------------------------
 # Vue : création / modification d'une configuration
 # ---------------------------------------------------------------------------

test_tube_scanner/scanner/templates/scanner/base.html

@@ -103,15 +103,14 @@
                     <i class="fa-solid fa-wrench w3-text-red w3-xlarge"></i> {% trans "Calibration" %}
                 </a>         
             {% endif %}
-            
-            <a href="{% url 'scanner:scanning' %}"  class="w3-bar-item w3-btn w3-hover-opacity">
-                <i class="fa-solid fa-film w3-text-green w3-xlarge""></i> {% trans "Balayage multi-puits" %}
-            </a>
             {% if conf.tracking %}
             <a href="{% url 'planarian:experiment-list' %}"  class="w3-bar-item w3-btn w3-hover-opacity">
                 <i class="fa-solid fa-vials w3-text-lime w3-xlarge"></i> {% trans "Préparation des expériences" %}
             </a>    
             {% endif %}
+            <a href="{% url 'scanner:scanning' %}"  class="w3-bar-item w3-btn w3-hover-opacity">
+                <i class="fa-solid fa-film w3-text-green w3-xlarge""></i> {% trans "Balayage multi-puits" %}
+            </a>             
             <a href="{% url 'scanner:images' %}"  class="w3-bar-item w3-btn w3-hover-opacity">
                  <i class="fa-regular fa-images w3-text-cyan w3-xlarge" w3-xlarge""></i> {% trans "Gestionnaire d'images" %}
             </a>
@@ -119,7 +118,6 @@
                 <i class="fa-solid fa-podcast w3-text-ambe w3-xlarge"r"></i>  {% trans "Redifusion vidéos" %}
             </a>
         {% endblock %}
-
 	</div>
 	{% endblock %}
 {% endblock  %}

test_tube_scanner/scanner/templates/scanner/calibration.html

@@ -149,7 +149,7 @@
             </div>
         </div>    
         {% if conf.tracking %}
-        <div class="w3-row w3-row-padding w3-light-grey w3-margin-1 w3-round w3-round-large"> 
+        <div class="w3-row w3-row-padding w3-light-grey w3-margin-1 w3-round w3-round-large w3-margin-top"> 
              <div class="w3-col"><input id="_track_it" type="checkbox" value="0" onclick="if (this.checked){this.value='1';}else{ this.value='0';}"> 
                 {% trans 'Configuration du tracking' %}
              </div>