planarian

This commit is contained in:
2026-05-09 23:02:11 +02:00
parent c7caccd951
commit 500950017f
3 changed files with 44 additions and 45 deletions
+2 -2
View File
@@ -9,7 +9,7 @@ from .models import ExperimentConfig
class ExperimentConfigAdmin(admin.ModelAdmin):
"""Admin Django pour les configurations d'expérience."""
#readonly_fields = ('experiment', )
readonly_fields = ("identifier", 'px_per_mm', 'fps', 'well_radius_mm',)
readonly_fields = ('px_per_mm', 'fps', 'well_radius_mm',)
list_display = ("experiment", "well", "px_per_mm", "fps",
"thresh_immobile", "thresh_mobile",
"photo_mode", "chemo_strength", "created_at")
@@ -19,7 +19,7 @@ class ExperimentConfigAdmin(admin.ModelAdmin):
fieldsets = (
(_("Identification"), {
"fields": ("identifier", "experiment", "well", "description"),
"fields": ("experiment", "well", "description"),
}),
(_("Calibration optique: générée lors de la calibration"), {
"fields": ("px_per_mm", "fps", "well_radius_mm"),
+9 -31
View File
@@ -1,27 +1,22 @@
# planarian/models.py
from django.db import models
from django.dispatch import receiver
from django.db.models.signals import post_save
#from django.conf import settings
from django.utils.translation import gettext_lazy as _
from django.contrib.auth.models import User
from scanner.models import Experiment, Well, WellPosition
from scanner.constants import ScannerConstants
from scanner.models import Experiment, Well
class ExperimentConfig(models.Model):
"""
Paramètres d'une expérience PlanarianScanner.
Peut être créé depuis Django admin, une vue formulaire ou un import CSV.
"""
author = models.ForeignKey(User, on_delete=models.CASCADE, verbose_name="Auteur", null=True, blank=True)
# --- Identification ---
identifier = models.CharField( max_length=100, verbose_name=_("Identifiant d'expérience"), help_text=_("session_1-HD-2026-04-27"), null=True, blank=True )
author = models.ForeignKey(User, on_delete=models.CASCADE, verbose_name="Auteur", null=True, blank=True)
experiment = models.ForeignKey(Experiment, verbose_name="Expérience", on_delete=models.CASCADE, related_name="experiment_well", null=True, blank=False)
well = models.ForeignKey(Well, verbose_name="Puit", on_delete=models.CASCADE, related_name="well_experiment", null=True, blank=False )
description = models.TextField( blank=True, verbose_name=_("Description"), )
description = models.TextField( blank=True, verbose_name=_("Description"), default="-")
created_at = models.DateTimeField(auto_now_add=True, verbose_name=_("Créé le"))
# --- Calibration optique ---
@@ -121,8 +116,8 @@ class ExperimentConfig(models.Model):
aggreg_radius_mm = models.FloatField(default=6.0, verbose_name=_("Rayon agrégation (mm)"))
class Meta:
verbose_name = _("Configuration expérience")
verbose_name_plural = _("Configuration des expériences")
verbose_name = _("Configuration d'une expérience")
verbose_name_plural = _("Configurations des expériences")
unique_together = ("experiment", "well")
ordering = ["-created_at"]
@@ -135,8 +130,9 @@ class ExperimentConfig(models.Model):
def to_params_dict(self) -> dict:
"""Retourne un dict compatible avec ExperimentParams."""
return {
"experiment": self.identifier,
"experiment": self.experiment.identifier,
"well": self.well.name,
"px_per_mm": self.px_per_mm,
"fps": self.fps,
"well_radius_mm": self.well_radius_mm,
@@ -158,22 +154,4 @@ class ExperimentConfig(models.Model):
"avoid_radius_mm": self.avoid_radius_mm,
"aggreg_radius_mm": self.aggreg_radius_mm,
}
def save(self, *args, **kwargs):
session = self.get_session()
dte = self.experiment.created.isoformat()[:19]
self.identifier = f'{dte}-{session.id}-{self.experiment.id}-{self.experiment.multiwell.position}-{self.well.name}'
super().save(*args, **kwargs)
@receiver(post_save, sender=ExperimentConfig)
def create_well_position(sender, instance, created, **kwargs):
if created:
active_well = WellPosition.active_well(instance.experiment.multiwell, instance.well)
instance.px_per_mm = active_well.px_per_mm
instance.well_radius_mm = instance.experiment.multiwell.diameter / 2
conf = ScannerConstants().get()
instance.fps = conf.video_frame_rate
instance.save()