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simulation

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denis defolie
2026-05-05 19:38:41 +02:00
parent d946de7b63
commit 3aaa88a1aa
7 changed files with 110 additions and 63 deletions
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test_tube_scanner/make_videos.sh
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@@ -3,62 +3,100 @@
# Génère 24 vidéos pour simuler le balayage d'un multi-puit de 6x24
# A1..A6, B1..B6, C1..C6, D1..D6
#
MODE="$1"
PATH="./media/simulation"
default_width=1000 # px
default_height=1000 # px
default_diameter=16.0 # mm
declare -A arguments=(
# key count length width fps duration seed bg-color arena-color arena-border shadow-color body-color body-dark body-light head-color thresh-immobile thresh-mobile thigmotaxis photo-mode photo-strength photo-x photo-y photo-sine-freq photo-radius chemo-strength chemo-x chemo-y chemo-radius avoid-strength avoid-radius aggreg-strength aggreg-radius chem-repulsion chem-decay
["A1"]="4 0.40 0.30 15 600 64 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.45 none 0.50 0.50 0.50 0.10 0.30 0.0 0.70 0.70 2.0 1.0 3.0 0.0 6.0 0.0 0.95"
)
#fps duration bg-color arena-color arena-border shadow-color body-color body-dark body-light head-color thresh-immobile thresh-mobile
BASE="15 60 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5"
declare -A arguments_all=(
# key count length width fps duration seed bg-color arena-color arena-border shadow-color body-color body-dark body-light head-color thresh-immobile thresh-mobile thigmotaxis photo-mode photo-strength photo-x photo-y photo-sine-freq photo-radius chemo-strength chemo-x chemo-y chemo-radius avoid-strength avoid-radius aggreg-strength aggreg-radius chem-repulsion chem-decay
["A1"]="3 0.40 0.30 15 60 64 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.45 none 0.50 0.50 0.50 0.10 0.30 0.0 0.70 0.70 2.0 1.0 3.0 0.0 6.0 0.0 0.95"
["A2"]="1 0.42 0.32 15 60 96 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 fixed 0.50 0.50 0.50 0.10 0.30 0.0 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
["A3"]="1 0.50 0.40 15 60 128 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 radial 0.50 0.50 0.50 0.10 0.30 0.5 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
["A4"]="3 0.60 0.35 15 60 192 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 none 0.50 0.50 0.50 0.10 0.30 0.5 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.5 0.95"
["A5"]="1 0.30 0.32 15 60 250 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 none 0.50 0.50 0.50 0.10 0.30 0.5 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
["A6"]="2 0.55 0.38 15 60 32 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 none 0.50 0.50 0.50 0.10 0.30 1.0 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
["B1"]="3 0.40 0.30 15 60 64 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.45 none 0.50 0.50 0.50 0.10 0.30 0.0 0.70 0.70 2.0 1.0 3.0 0.0 6.0 0.0 0.95"
["B2"]="1 0.42 0.32 15 60 96 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 fixed 0.50 0.50 0.50 0.10 0.30 0.0 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
["B3"]="1 0.50 0.40 15 60 128 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 radial 0.50 0.50 0.50 0.10 0.30 0.5 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
["B4"]="3 0.60 0.35 15 60 192 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 none 0.50 0.50 0.50 0.10 0.30 0.5 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.5 0.95"
["B5"]="1 0.30 0.32 15 60 250 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 none 0.50 0.50 0.50 0.10 0.30 0.5 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
["B6"]="2 0.55 0.38 15 60 32 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 none 0.50 0.50 0.50 0.10 0.30 1.0 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
["C1"]="3 0.40 0.30 15 60 64 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.45 none 0.50 0.50 0.50 0.10 0.30 0.0 0.70 0.70 2.0 1.0 3.0 0.0 6.0 0.0 0.95"
["C2"]="1 0.42 0.32 15 60 96 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 fixed 0.50 0.50 0.50 0.10 0.30 0.0 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
["C3"]="1 0.50 0.40 15 60 128 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 radial 0.50 0.50 0.50 0.10 0.30 0.5 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
["C4"]="3 0.60 0.35 15 60 192 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 none 0.50 0.50 0.50 0.10 0.30 0.5 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.5 0.95"
["C5"]="1 0.30 0.32 15 60 250 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 none 0.50 0.50 0.50 0.10 0.30 0.5 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
["C6"]="2 0.55 0.38 15 60 32 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 none 0.50 0.50 0.50 0.10 0.30 1.0 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
["D1"]="3 0.40 0.30 15 60 64 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.45 none 0.50 0.50 0.50 0.10 0.30 0.0 0.70 0.70 2.0 1.0 3.0 0.0 6.0 0.0 0.95"
["D2"]="1 0.42 0.32 15 60 96 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 fixed 0.50 0.50 0.50 0.10 0.30 0.0 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
["D3"]="1 0.50 0.40 15 60 128 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 radial 0.50 0.50 0.50 0.10 0.30 0.5 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
["D4"]="3 0.60 0.35 15 60 192 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 none 0.50 0.50 0.50 0.10 0.30 0.5 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.5 0.95"
["D5"]="1 0.30 0.32 15 60 250 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 none 0.50 0.50 0.50 0.10 0.30 0.5 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
["D6"]="2 0.55 0.38 15 60 32 #EBEBEB #FAFAFA #8C8C8C #C8C8C8 #A5A5A5 #373737 #D2D2D2 #828282 0.2 1.5 0.70 none 0.50 0.50 0.50 0.10 0.30 1.0 0.70 0.70 2.0 0.0 3.0 0.0 6.0 0.0 0.95"
#photo-mode photo-strength photo-x photo-y photo-sine-freq photo-radius
PHOTO_0="none 0.50 0.50 0.50 0.10 0.30"
PHOTO_1="fixed 0.50 0.50 0.50 0.10 0.40"
PHOTO_2="sine 0.50 0.50 0.50 0.10 0.50"
PHOTO_3="radial 0.50 0.50 0.50 0.10 0.60"
)
#chemo-strength chemo-x chemo-y chemo-radius
CHEMO_0="0.0 0.70 0.70 2.0"
CHEMO_1="0.5 0.70 0.70 2.0"
CHEMO_2="1.0 0.70 0.70 2.0"
#avoid-strength avoid-radius aggreg-strength aggreg-radius chem-repulsion chem-decay
AVOID_0="0.0 3.0 0.0 6.0 0.0 0.95"
AVOID_1="0.5 3.0 0.0 6.0 0.5 0.75"
AVOID_2="1.0 3.0 0.0 6.0 1.0 0.65"
#length width
SIZE_0="0.40 0.30"
SIZE_1="0.45 0.35"
SIZE_2="0.50 0.40"
SIZE_3="0.55 0.45"
SIZE_4="0.65 0.45"
SIZE_5="0.7 0.25"
declare -A DEFAULT
declare -A ALL
#=========================== count size seed base thigmotaxis photo chemo avoid
DEFAULT[default_simulation]="4 $SIZE_0 32 $BASE 0.45 $PHOTO_0 $CHEMO_0 $AVOID_1"
for key in "${!arguments[@]}"; do
args="${arguments[$key]}"
read -r count length width fps duration seed bg_color arena_color arena_border shadow_color \
body_color body_dark body_light head_color thresh_immobile thresh_mobile thigmotaxis \
photo_mode photo_strength photo_x photo_y photo_sine_freq photo_radius chemo_strength chemo_x chemo_y chemo_radius \
avoid_strength avoid_radius aggreg_strength aggreg_radius chem_repulsion chem_decay <<< "$args"
echo "==== Exécution de $PATH/$key.mp4"
./planarian_sim.py --output "$PATH/$key.mp4" --default_width "$default_width" --default_height "$default_height" --default_diameter "$default_diameter" --no-csv \
--count "$count" --length "$length" --width "$width" --duration "$duration" --fps "$fps" --seed "$seed" \
--bg-color "$bg_color" --arena-color "$arena_color" --arena-border "$arena_border" --shadow-color "$shadow_color" \
--body-color "$body_color" --body-dark "$body_dark" --body-light "$body_light" --head-color "$head_color" \
--thresh-immobile "$thresh_immobile" --thresh-mobile "$thresh_mobile" --thigmotaxis "$thigmotaxis" \
--photo-mode "$photo_mode" --photo-strength "$photo_strength" --photo-x "$photo_x" --photo-y "$photo_y" --photo-sine-freq "$photo_sine_freq" --photo-radius "$photo_radius" \
--chemo-strength "$chemo_strength" --chemo-x "$chemo_x" --chemo-y "$chemo_y" --chemo-radius "$chemo_radius" \
--avoid-strength "$avoid_strength" --avoid-radius "$avoid_radius" --aggreg-strength "$aggreg_strength" --aggreg-radius "$aggreg_radius" \
--chem-repulsion "$chem_repulsion" --chem-decay "$chem_decay"
done
#======= count size seed base thigmotaxis photo chemo avoid
ALL[A1]="4 $SIZE_0 32 $BASE 0.45 $PHOTO_0 $CHEMO_0 $AVOID_0"
ALL[A2]="4 $SIZE_1 64 $BASE 0.50 $PHOTO_1 $CHEMO_1 $AVOID_1"
ALL[A3]="4 $SIZE_2 96 $BASE 0.55 $PHOTO_1 $CHEMO_2 $AVOID_2"
ALL[A4]="4 $SIZE_3 128 $BASE 0.60 $PHOTO_2 $CHEMO_0 $AVOID_1"
ALL[A5]="4 $SIZE_4 192 $BASE 0.65 $PHOTO_2 $CHEMO_1 $AVOID_0"
ALL[A6]="4 $SIZE_5 240 $BASE 0.75 $PHOTO_3 $CHEMO_2 $AVOID_2"
ALL[B1]="4 $SIZE_0 32 $BASE 0.45 $PHOTO_3 $CHEMO_0 $AVOID_0"
ALL[B2]="4 $SIZE_1 64 $BASE 0.50 $PHOTO_0 $CHEMO_1 $AVOID_1"
ALL[B3]="4 $SIZE_2 96 $BASE 0.55 $PHOTO_0 $CHEMO_2 $AVOID_0"
ALL[B4]="4 $SIZE_3 128 $BASE 0.65 $PHOTO_0 $CHEMO_1 $AVOID_2"
ALL[B5]="4 $SIZE_4 192 $BASE 0.85 $PHOTO_0 $CHEMO_2 $AVOID_0"
ALL[B6]="4 $SIZE_5 240 $BASE 0.95 $PHOTO_0 $CHEMO_0 $AVOID_0"
ALL[C1]="4 $SIZE_0 32 $BASE 0.40 $PHOTO_0 $CHEMO_0 $AVOID_1"
ALL[C2]="4 $SIZE_1 64 $BASE 0.30 $PHOTO_0 $CHEMO_0 $AVOID_0"
ALL[C3]="4 $SIZE_2 96 $BASE 0.55 $PHOTO_0 $CHEMO_1 $AVOID_0"
ALL[C4]="4 $SIZE_3 128 $BASE 0.45 $PHOTO_0 $CHEMO_2 $AVOID_2"
ALL[C5]="4 $SIZE_4 192 $BASE 0.50 $PHOTO_0 $CHEMO_0 $AVOID_0"
ALL[C6]="4 $SIZE_5 240 $BASE 0.65 $PHOTO_0 $CHEMO_1 $AVOID_0"
ALL[D1]="4 $SIZE_0 32 $BASE 0.70 $PHOTO_0 $CHEMO_2 $AVOID_1"
ALL[D2]="4 $SIZE_1 64 $BASE 0.65 $PHOTO_0 $CHEMO_0 $AVOID_0"
ALL[D3]="4 $SIZE_2 96 $BASE 0.75 $PHOTO_0 $CHEMO_1 $AVOID_2"
ALL[D4]="4 $SIZE_3 128 $BASE 0.85 $PHOTO_0 $CHEMO_0 $AVOID_0"
ALL[D5]="4 $SIZE_4 192 $BASE 0.65 $PHOTO_0 $CHEMO_2 $AVOID_0"
ALL[D6]="4 $SIZE_5 240 $BASE 0.45 $PHOTO_0 $CHEMO_0 $AVOID_0"
export_video() {
local -n arguments=$1
for key in "${!arguments[@]}"; do
args="${arguments[$key]}"
read -r count length width seed fps duration bg_color arena_color arena_border shadow_color \
body_color body_dark body_light head_color thresh_immobile thresh_mobile thigmotaxis \
photo_mode photo_strength photo_x photo_y photo_sine_freq photo_radius chemo_strength chemo_x chemo_y chemo_radius \
avoid_strength avoid_radius aggreg_strength aggreg_radius chem_repulsion chem_decay <<< "$args"
echo "==== Exécution de $PATH/$key.mp4"
./planarian_sim.py --output "$PATH/$key.mp4" --default_width "$default_width" --default_height "$default_height" --default_diameter "$default_diameter" --no-csv \
--count "$count" --length "$length" --width "$width" --duration "$duration" --fps "$fps" --seed "$seed" \
--bg-color "$bg_color" --arena-color "$arena_color" --arena-border "$arena_border" --shadow-color "$shadow_color" \
--body-color "$body_color" --body-dark "$body_dark" --body-light "$body_light" --head-color "$head_color" \
--thresh-immobile "$thresh_immobile" --thresh-mobile "$thresh_mobile" --thigmotaxis "$thigmotaxis" \
--photo-mode "$photo_mode" --photo-strength "$photo_strength" --photo-x "$photo_x" --photo-y "$photo_y" --photo-sine-freq "$photo_sine_freq" --photo-radius "$photo_radius" \
--chemo-strength "$chemo_strength" --chemo-x "$chemo_x" --chemo-y "$chemo_y" --chemo-radius "$chemo_radius" \
--avoid-strength "$avoid_strength" --avoid-radius "$avoid_radius" --aggreg-strength "$aggreg_strength" --aggreg-radius "$aggreg_radius" \
--chem-repulsion "$chem_repulsion" --chem-decay "$chem_decay"
done
}
if [ "$MODE" = "all" ]; then
export_video ALL
else
export_video DEFAULT
fi