export csv

This commit is contained in:
2026-05-11 23:04:04 +02:00
parent 13141bc46a
commit 15c01c483f
11 changed files with 391 additions and 285 deletions
@@ -9,5 +9,3 @@
{% endfor %} {% endfor %}
</div> </div>
{% endif %} {% endif %}
+2 -1
View File
@@ -13,13 +13,14 @@ class ExperimentConfigAdmin(admin.ModelAdmin):
list_display = ("experiment", "well", "active", "px_per_mm", "fps", list_display = ("experiment", "well", "active", "px_per_mm", "fps",
"thresh_immobile", "thresh_mobile", "thresh_immobile", "thresh_mobile",
"photo_mode", "chemo_strength", "created_at", ) "photo_mode", "chemo_strength", "created_at", )
list_filter = ("experiment", "photo_mode", "tube_axis") list_filter = ("experiment", "photo_mode", "tube_axis")
search_fields = ("experiment", "well", "description") search_fields = ("experiment", "well", "description")
ordering = ("-created_at",) ordering = ("-created_at",)
fieldsets = ( fieldsets = (
(_("Identification"), { (_("Identification"), {
"fields": ("experiment", "well", "description"), "fields": ("experiment", "well", "active", "description"),
}), }),
(_("Calibration optique: générée lors de la calibration"), { (_("Calibration optique: générée lors de la calibration"), {
"fields": ("px_per_mm", "fps", "well_radius_mm"), "fields": ("px_per_mm", "fps", "well_radius_mm"),
+9 -2
View File
@@ -53,6 +53,7 @@ class CsvImportForm(forms.Form):
label=_("Écraser les configurations existantes"), label=_("Écraser les configurations existantes"),
) )
def clean_csv_file(self): def clean_csv_file(self):
f = self.cleaned_data["csv_file"] f = self.cleaned_data["csv_file"]
try: try:
@@ -77,8 +78,14 @@ class ExportCsvForm(forms.Form):
"""Formulaire de demande d'export CSV depuis ReductStore.""" """Formulaire de demande d'export CSV depuis ReductStore."""
experiment = forms.CharField(label=_("Expérience"), max_length=100) experiment = forms.CharField(label=_("Expérience"), max_length=100)
well = forms.CharField(label=_("Puits"), max_length=20) #well = forms.CharField(label=_("Puits"), max_length=20)
planarian = forms.IntegerField(label=_("Index planaire"), initial=0, min_value=0) well = forms.ModelChoiceField(
queryset=models.Well.objects.filter().order_by('name').all(),
label=_('Puits'),
widget=forms.Select(attrs={'class': 'w3-select',}),
required=True,initial="D1",
)
planarian = forms.IntegerField(label=_("Index planaire"), initial=0, min_value=0, max_value=20)
record_type = forms.ChoiceField( record_type = forms.ChoiceField(
label=_("Type d'enregistrement"), label=_("Type d'enregistrement"),
choices=[("frame", _("Frame par frame")), ("summary", _("Résumé"))], choices=[("frame", _("Frame par frame")), ("summary", _("Résumé"))],
@@ -19,7 +19,7 @@
<div class="w3-margin-left w3-margin-bottom"> <div class="w3-margin-left w3-margin-bottom">
{% for ss in experiments %} {% for ss in experiments %}
<input class="" type="radio" name="_expid" value="{{ ss.id }}" {% if ss.id == current_experiment.id %}checked{% endif %} onchange="this.form.submit()" > <input class="" type="radio" name="_expid" value="{{ ss.id }}" {% if ss.id == current_experiment.id %}checked{% endif %} onchange="this.form.submit()" >
<label>{{ ss.multiwell }}</label> <label>{{ ss }}</label>
{% endfor %} {% endfor %}
</div> </div>
</form> </form>
@@ -54,14 +54,6 @@
</header> </header>
<div class="w3-container w3-padding"> <div class="w3-container w3-padding">
<div class="w3-row w3-row-padding"> <div class="w3-row w3-row-padding">
<!-- identifier -->
<div class="w3-half">
<label class="w3-text-teal"><b>{{ form.identifier.label }}</b></label>
{{ form.identifier }}
{% if form.identifier.errors %}
<span class="w3-text-red w3-small">{{ form.identifier.errors|join:", " }}</span>
{% endif %}
</div>
<!-- author --> <!-- author -->
<div class="w3-half w3-margin-bottom"> <div class="w3-half w3-margin-bottom">
@@ -3,7 +3,6 @@
{% block content %} {% block content %}
<div class="w3-container w3-padding" style="max-width:1200px; margin:auto;"> <div class="w3-container w3-padding" style="max-width:1200px; margin:auto;">
<!-- En-tête --> <!-- En-tête -->
<div class="w3-panel w3-teal w3-round-large w3-padding-16 w3-margin-bottom"> <div class="w3-panel w3-teal w3-round-large w3-padding-16 w3-margin-bottom">
<div class="w3-row"> <div class="w3-row">
@@ -21,7 +20,6 @@
</div> </div>
</div> </div>
</div> </div>
<!-- Messages Django --> <!-- Messages Django -->
{% for message in messages %} {% for message in messages %}
<div class="w3-panel w3-round alert <div class="w3-panel w3-round alert
@@ -137,15 +135,17 @@
title="{% trans 'Interactions inter-individus' %}">🔀</span> title="{% trans 'Interactions inter-individus' %}">🔀</span>
{% endif %} {% endif %}
</td> </td>
<!-- Date de création --> <!-- Date de création -->
<td class="w3-hide-small w3-small w3-text-grey"> <td class="w3-hide-small w3-small w3-text-grey">
{{ cfg.created_at|date:"d/m/Y H:i" }} {{ cfg.created_at|date:"d/m/Y H:i" }}
</td> </td>
<!-- Actions --> <!-- Actions -->
<td style="white-space:nowrap;"> <td style="white-space:nowrap;">
{% if current_session and current_experiment %}
<a href="{% url 'planarian:experiment-edit' cfg.pk current_session.id current_experiment.id %}"
{% else %}
<a href="{% url 'planarian:experiment-edit' cfg.pk %}" <a href="{% url 'planarian:experiment-edit' cfg.pk %}"
{% endif %}
class="w3-button w3-small w3-teal w3-round" class="w3-button w3-small w3-teal w3-round"
title="{% trans 'Modifier' %}"></a> title="{% trans 'Modifier' %}"></a>
<a href="{% url 'planarian:export-csv' %}?experiment={{ cfg.experiment }}&well={{ cfg.well }}" <a href="{% url 'planarian:export-csv' %}?experiment={{ cfg.experiment }}&well={{ cfg.well }}"
@@ -1,39 +1,10 @@
{% extends "planarian/base.html" %} {% extends "planarian/base.html" %}
{% load i18n %} {% load i18n %}
{% block content %} {% block content %}
<div class="w3-container w3-padding" style="max-width:760px; margin:auto;"> <div class="w3-container w3-padding" style="max-width:760px; margin:auto;">
{% if current_session and current_experiment %}
<!-- En-tête --> {% include "inc/alert.html" %}
<div class="w3-panel w3-blue w3-round-large w3-padding-16 w3-margin-bottom">
<div class="w3-row">
<div class="w3-col s12 m8 w3-bar-item">
<span class="w3-xlarge">
📥 {% trans "Exporter les données vers CSV" %}
</span>
</div>
<div class="w3-col s12 m4 w3-bar-item w3-right-align" style="padding-top:6px;">
<a href="{% url 'planarian:experiment-list' %}"
class="w3-button w3-white w3-round w3-text-blue">
← {% trans "Retour à la liste" %}
</a>
</div>
</div>
</div>
<!-- Messages Django -->
{% for message in messages %}
<div class="w3-panel w3-round
{% if message.tags == 'success' %}w3-green
{% elif message.tags == 'error' %}w3-red
{% elif message.tags == 'warning' %}w3-orange
{% else %}w3-blue{% endif %}">
<p>{{ message }}</p>
</div>
{% endfor %}
<!-- Explication --> <!-- Explication -->
<div class="w3-panel w3-pale-blue w3-round w3-margin-bottom"> <div class="w3-panel w3-pale-blue w3-round w3-margin-bottom">
<p> <p>
@@ -44,89 +15,54 @@
{% trans "Colonnes exportées compatibles EthoVision XT : distance, vitesse, états de mobilité, thigmotactisme." %} {% trans "Colonnes exportées compatibles EthoVision XT : distance, vitesse, états de mobilité, thigmotactisme." %}
</p> </p>
</div> </div>
<!-- Formulaire --> <!-- Formulaire -->
<form method="post" novalidate> <form method="post" novalidate>
{% csrf_token %} {% csrf_token %}
<input type="hidden" id="_sid" name="_sid" value="{{ current_session.id }}"> <input type="hidden" id="_sid" name="_sid" value="{{ current_session.id }}">
<input type="hidden" id="_expid" name="_expid" value="{{ current_experiment.id }}"> <input type="hidden" id="_expid" name="_expid" value="{{ current_experiment.id }}">
{% if form.non_field_errors %}
<div class="w3-panel w3-red w3-round">
{% for error in form.non_field_errors %}
<p>⚠ {{ error }}</p>
{% endfor %}
</div>
{% endif %}
<div class="w3-card-4 w3-border w3-round w3-round-large"> <div class="w3-card-4 w3-border w3-round w3-round-large">
<header class="w3-container w3-blue w3-round w3-round-top-large"> <header class="w3-container w3-blue w3-round w3-round-top-large">
<h3 class="w3-text-white">{% trans "Paramètres d'export" %}</h3> <h3 class="w3-text-white">{% trans "Paramètres d'export" %}</h3>
</header> </header>
<div class="w3-container w3-padding-24"> <div class="w3-container w3-padding-24">
<!-- Ligne 1 : expérience + puits --> <!-- Ligne 1 : expérience + puits -->
<div class="w3-row-padding w3-margin-bottom"> <div class="w3-row-padding w3-margin-bottom">
<div class="w3-col m7 s12 w3-margin-bottom"> <div class="w3-col m7 s12 w3-margin-bottom">
<label class="w3-text-blue"><b>{{ form.experiment.label }}</b></label> <label class="w3-text-blue"><b>{% trans "Expérience" %}</b></label>
{% if form.experiment.help_text %} <input type="text" name="experiment" value="{{ current_experiment.identifier }}" readonly/>
<p class="w3-small w3-text-grey" style="margin:0 0 4px;">{{ form.experiment.help_text }}</p>
{% endif %}
<select id="experiment-list">
{% for cfg in experiments %}
<option value="{{ cfg.identifier}}" {% if current_experiment.identifier == cfg.identifier %}selected{% endif %} >{{ cfg.identifier }}</option>
{% endfor %}
</select>
{% if form.experiment.errors %}
<!--span class="w3-text-red w3-small">{{ form.experiment.errors|join:", " }}</span-->
{% endif %}
</div> </div>
<div class="w3-col m5 s12 w3-margin-bottom"> <div class="w3-col m5 s12 w3-margin-bottom">
<label class="w3-text-blue"><b>{{ form.well.label }}</b></label> <label class="w3-text-blue"><b>{% trans "Puits" %}</b></label>
<select id="id_well"> <select name="well">
{% for w in well_choices %} {% for well in well_choices %}
<option value="{{ w.name }}">{{ w.name }}</option> <option value="{{ well.name }}">{{ well.name }}</option>
{% endfor %} {% endfor %}
</select> </select>
{% if form.well.errors %}
<span class="w3-text-red w3-small">{{ form.well.errors|join:", " }}</span>
{% endif %}
</div> </div>
</div> </div>
<!-- Ligne 2 : planaire + type d'enregistrement --> <!-- Ligne 2 : planaire + type d'enregistrement -->
<div class="w3-row-padding w3-margin-bottom"> <div class="w3-row-padding w3-margin-bottom">
<div class="w3-col m4 s12 w3-margin-bottom"> <div class="w3-col m4 s12 w3-margin-bottom">
<label class="w3-text-blue"><b>{{ form.planarian.label }}</b></label> <label class="w3-text-blue"><b>{% trans "Index planaire" %}</b></label>
<p class="w3-small w3-text-light-grey" style="margin:0 0 4px;"> <p class="w3-small w3-text-light-grey" style="margin:0 0 4px;">
{% trans "Index du planaire dans le puits (commence à 0)" %} {% trans "Index du planaire dans le puits (commence à 0)" %}
</p> </p>
{{ form.planarian }} <input type="number" name="planarian" step="1" min="0" max="20" value="{{ planarian }}" />
{% if form.planarian.errors %}
<span class="w3-text-red w3-small">{{ form.planarian.errors|join:", " }}</span>
{% endif %}
</div> </div>
<div class="w3-col m8 s12 w3-margin-bottom"> <div class="w3-col m8 s12 w3-margin-bottom">
<label class="w3-text-blue"><b>{{ form.record_type.label }}</b></label> <label class="w3-text-blue"><b>{% trans "Type d'enregistrement" %}</b></label>
<p class="w3-small w3-text-light-grey" style="margin:0 0 4px;"> <p class="w3-small w3-text-light-grey" style="margin:0 0 4px;">
{% trans "Frame par frame : une ligne par image. Résumé : métriques agrégées de la session." %} {% trans "Frame par frame : une ligne par image. Résumé : métriques agrégées de la session." %}
</p> </p>
<!-- Radio buttons stylisés W3 --> <select name="record_type">
<div class="w3-row-padding" style="margin-top:6px;"> <option value="frame">{% trans "Frame par frame" %}</option>
{{ form.record_type }} <option value="summary">{% trans "Résumé" %}</option>
</div> </select>
{% if form.record_type.errors %}
<span class="w3-text-red w3-small">{{ form.record_type.errors|join:", " }}</span>
{% endif %}
</div> </div>
</div> </div>
<!-- Ligne 3 : plage temporelle (optionnel) --> <!-- Ligne 3 : plage temporelle (optionnel) -->
<div class="w3-border-top w3-padding-top w3-margin-top"> <div class="w3-border-top w3-padding-top w3-margin-top">
<p class="w3-text-blue-grey"> <p class="w3-text-blue-grey">
@@ -136,36 +72,26 @@
</span> </span>
</p> </p>
<div class="w3-row-padding"> <div class="w3-row-padding">
<div class="w3-col m6 s12 w3-margin-bottom"> <div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-blue-grey">{{ form.start_dt.label }}</label> <label class="w3-text-blue-grey">{% trans "Début (UTC)" %}</label>
{{ form.start_dt }} <input type="datetime-local" class="datetime" name="start_dt">
{% if form.start_dt.errors %}
<span class="w3-text-red w3-small">{{ form.start_dt.errors|join:", " }}</span>
{% endif %}
</div> </div>
<div class="w3-col m6 s12 w3-margin-bottom"> <div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-blue-grey">{{ form.stop_dt.label }}</label> <label class="w3-text-blue-grey">{% trans "Fin (UTC)" %}</label>
{{ form.stop_dt }} <input type="datetime-local" class="datetime" name="stop_dt">
{% if form.stop_dt.errors %}
<span class="w3-text-red w3-small">{{ form.stop_dt.errors|join:", " }}</span>
{% endif %}
</div> </div>
</div> </div>
</div> </div>
</div><!-- fin padding --> </div><!-- fin padding -->
</div><!-- fin card --> </div><!-- fin card -->
<!-- Boutons --> <!-- Boutons -->
<div class="w3-row-padding w3-margin-top"> <div class="w3-row-padding w3-margin-top">
<div class="w3-col s12"> <div class="w3-col s12">
<button type="submit" class="w3-button w3-blue w3-large w3-padding-large"> <button type="submit" name="valid" class="w3-button w3-blue w3-large w3-padding-large" value="ok">
📥 {% trans "Générer et télécharger le CSV" %} 📥 {% trans "Générer et télécharger le CSV" %}
</button> </button>
<a href="{% url 'planarian:experiment-list' %}" <a href="/"
class="w3-button w3-light-grey w3-round w3-large w3-padding-large w3-margin-left"> class="w3-button w3-light-grey w3-round w3-large w3-padding-large w3-margin-left">
✖ {% trans "Annuler" %} ✖ {% trans "Annuler" %}
</a> </a>
@@ -173,7 +99,6 @@
</div> </div>
</form> </form>
<!-- Rappel des colonnes exportées --> <!-- Rappel des colonnes exportées -->
<div class="w3-card w3-round-large w3-margin-top w3-border w3-round w3-round-large w3-margin-bottom"> <div class="w3-card w3-round-large w3-margin-top w3-border w3-round w3-round-large w3-margin-bottom">
<header class="w3-container w3-blue-grey w3-round w3-round-top-large"> <header class="w3-container w3-blue-grey w3-round w3-round-top-large">
@@ -209,9 +134,7 @@
</div> </div>
</div> </div>
</div> </div>
</div><!-- fin container --> </div><!-- fin container -->
<style> <style>
input[type="text"], input[type="text"],
input[type="number"], input[type="number"],
@@ -231,10 +154,10 @@
outline: none; outline: none;
background-color: #fff; background-color: #fff;
} }
/* Masquer le radio natif, laisser le label stylisé */
.w3-button input[type="radio"] {
display: none;
}
</style> </style>
{% else %}
<div class="w3-container w3-padding-64 w3-margin" style="max-width:760px; margin:auto;">
<h3 class="w3-panel w3-blue w3-round-xlarge w3-padding-64 w3-center"> {% trans "Choisir une session" %}</h3>
</div>
{% endif %}
{% endblock %} {% endblock %}
@@ -0,0 +1,233 @@
{% extends "planarian/base.html" %}
{% load i18n %}
{% block content %}
<div class="w3-container w3-padding" style="max-width:760px; margin:auto;">
{% if current_session and current_experiment %}
<!-- En-tête -->
<div class="w3-panel w3-blue w3-round-large w3-padding-16 w3-margin-bottom">
<div class="w3-row">
<div class="w3-col s12 m8 w3-bar-item">
<span class="w3-xlarge">
📥 {% trans "Exporter les données vers CSV" %}
</span>
</div>
<div class="w3-col s12 m4 w3-bar-item w3-right-align" style="padding-top:6px;">
<a href="/"
class="w3-button w3-white w3-round w3-text-blue">
← {% trans "Retour" %}
</a>
</div>
</div>
</div>
<!-- Messages Django -->
{% for message in messages %}
<div class="w3-panel w3-round
{% if message.tags == 'success' %}w3-green
{% elif message.tags == 'error' %}w3-red
{% elif message.tags == 'warning' %}w3-orange
{% else %}w3-blue{% endif %}">
<p>{{ message }}</p>
</div>
{% endfor %}
<!-- Explication -->
<div class="w3-panel w3-pale-blue w3-round w3-margin-bottom">
<p>
{% trans "Sélectionnez l'expérience, le puits et le type d'enregistrement à exporter." %}
{% trans "Le fichier CSV sera généré depuis ReductStore et téléchargé directement." %}
</p>
<p class="w3-small w3-text-grey" style="margin:0;">
{% trans "Colonnes exportées compatibles EthoVision XT : distance, vitesse, états de mobilité, thigmotactisme." %}
</p>
</div>
<!-- Formulaire -->
<form method="post" novalidate>
{% csrf_token %}
<input type="hidden" id="_sid" name="_sid" value="{{ current_session.id }}">
<input type="hidden" id="_expid" name="_expid" value="{{ current_experiment.id }}">
{% if form.non_field_errors %}
<div class="w3-panel w3-red w3-round">
{% for error in form.non_field_errors %}
<p>⚠ {{ error }}</p>
{% endfor %}
</div>
{% endif %}
<div class="w3-card-4 w3-border w3-round w3-round-large">
<header class="w3-container w3-blue w3-round w3-round-top-large">
<h3 class="w3-text-white">{% trans "Paramètres d'export" %}</h3>
</header>
<div class="w3-container w3-padding-24">
<!-- Ligne 1 : expérience + puits -->
<div class="w3-row-padding w3-margin-bottom">
<div class="w3-col m7 s12 w3-margin-bottom">
<label class="w3-text-blue"><b>{{ form.experiment.label }}</b></label>
{% if form.experiment.help_text %}
<p class="w3-small w3-text-grey" style="margin:0 0 4px;">{{ form.experiment.help_text }}</p>
{% endif %}
{{ form.experiment }}
{% if form.experiment.errors %}
<!--span class="w3-text-red w3-small">{{ form.experiment.errors|join:", " }}</span-->
{% endif %}
</div>
<div class="w3-col m5 s12 w3-margin-bottom">
<label class="w3-text-blue"><b>{{ form.well.label }}</b></label>
{{ form.well }}
{% if form.well.errors %}
<span class="w3-text-red w3-small">{{ form.well.errors|join:", " }}</span>
{% endif %}
</div>
</div>
<!-- Ligne 2 : planaire + type d'enregistrement -->
<div class="w3-row-padding w3-margin-bottom">
<div class="w3-col m4 s12 w3-margin-bottom">
<label class="w3-text-blue"><b>{{ form.planarian.label }}</b></label>
<p class="w3-small w3-text-light-grey" style="margin:0 0 4px;">
{% trans "Index du planaire dans le puits (commence à 0)" %}
</p>
{{ form.planarian }}
{% if form.planarian.errors %}
<span class="w3-text-red w3-small">{{ form.planarian.errors|join:", " }}</span>
{% endif %}
</div>
<div class="w3-col m8 s12 w3-margin-bottom">
<label class="w3-text-blue"><b>{{ form.record_type.label }}</b></label>
<p class="w3-small w3-text-light-grey" style="margin:0 0 4px;">
{% trans "Frame par frame : une ligne par image. Résumé : métriques agrégées de la session." %}
</p>
<!-- Radio buttons stylisés W3 -->
<div class="w3-row-padding" style="margin-top:6px;">
{{ form.record_type }}
</div>
{% if form.record_type.errors %}
<span class="w3-text-red w3-small">{{ form.record_type.errors|join:", " }}</span>
{% endif %}
</div>
</div>
<!-- Ligne 3 : plage temporelle (optionnel) -->
<div class="w3-border-top w3-padding-top w3-margin-top">
<p class="w3-text-blue-grey">
<b>{% trans "Plage temporelle" %}</b>
<span class="w3-small w3-text-grey w3-margin-left">
{% trans "(optionnel — laisser vide pour exporter toute la session)" %}
</span>
</p>
<div class="w3-row-padding">
<div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-blue-grey">{{ form.start_dt.label }}</label>
{{ form.start_dt }}
{% if form.start_dt.errors %}
<span class="w3-text-red w3-small">{{ form.start_dt.errors|join:", " }}</span>
{% endif %}
</div>
<div class="w3-col m6 s12 w3-margin-bottom">
<label class="w3-text-blue-grey">{{ form.stop_dt.label }}</label>
{{ form.stop_dt }}
{% if form.stop_dt.errors %}
<span class="w3-text-red w3-small">{{ form.stop_dt.errors|join:", " }}</span>
{% endif %}
</div>
</div>
</div>
</div><!-- fin padding -->
</div><!-- fin card -->
<!-- Boutons -->
<div class="w3-row-padding w3-margin-top">
<div class="w3-col s12">
<button type="submit" class="w3-button w3-blue w3-large w3-padding-large">
📥 {% trans "Générer et télécharger le CSV" %}
</button>
<a href="/"
class="w3-button w3-light-grey w3-round w3-large w3-padding-large w3-margin-left">
✖ {% trans "Annuler" %}
</a>
</div>
</div>
</form>
<!-- Rappel des colonnes exportées -->
<div class="w3-card w3-round-large w3-margin-top w3-border w3-round w3-round-large w3-margin-bottom">
<header class="w3-container w3-blue-grey w3-round w3-round-top-large">
<h4 class="w3-text-white" style="margin:8px 0;">
{% trans "Colonnes du fichier CSV exporté" %}
</h4>
</header>
<div class="w3-container w3-padding-16">
<div class="w3-row-padding">
<div class="w3-col m6 s12">
<p class="w3-text-blue-grey w3-small"><b>{% trans "Identification / position" %}</b></p>
<ul class="w3-ul w3-small w3-border w3-round">
<li><code>timestamp</code></li>
<li><code>x_mm</code> / <code>y_mm</code></li>
<li><code>cx_px</code> / <code>cy_px</code></li>
<li><code>area_px</code></li>
<li><code>axial_pos</code> / <code>axial_speed</code></li>
</ul>
</div>
<div class="w3-col m6 s12">
<p class="w3-text-blue-grey w3-small"><b>{% trans "Métriques EthoVision XT" %}</b></p>
<ul class="w3-ul w3-small w3-border w3-round">
<li><code>velocity_mm_s</code> — {% trans "vitesse instantanée" %}</li>
<li><code>total_distance_mm</code> — {% trans "distance cumulée" %}</li>
<li><code>moving</code> / <code>duration_moving_s</code></li>
<li><code>mobility_state</code> — {% trans "Immobile / Mobile / Highly mobile" %}</li>
<li><code>dist_to_wall_mm</code> / <code>near_wall</code></li>
</ul>
</div>
</div>
</div>
</div>
</div><!-- fin container -->
<style>
input[type="text"],
input[type="number"],
input[type="datetime-local"],
select {
width: 100%;
padding: 8px 12px;
border: 1px solid #ccc;
border-radius: 4px;
font-size: 15px;
box-sizing: border-box;
background-color: #fafafa;
transition: border-color 0.2s;
}
input:focus, select:focus {
border-color: #2196F3;
outline: none;
background-color: #fff;
}
/* Masquer le radio natif, laisser le label stylisé */
.w3-button input[type="radio"] {
display: none;
}
</style>
{% endif %}
{% endblock %}
+17 -5
View File
@@ -7,13 +7,25 @@ app_name = "planarian"
urlpatterns = [ urlpatterns = [
# Configurations expériences # Configurations expériences
path("experiments/", views.ExperimentConfigListView.as_view(), name="experiment-list"), #path("experiments/", views.ExperimentConfigListView.as_view(), name="experiment-list2"),
path("experiments/new/", views.ExperimentConfigFormView.as_view(), name="experiment-new"), #
path("experiments/<int:pk>/",views.ExperimentConfigFormView.as_view(), name="experiment-edit"), #path("experiments/new/", views.ExperimentConfigFormView.as_view(), name="experiment-new"),
#path("experiments/<int:pk>/",views.ExperimentConfigFormView.as_view(), name="experiment-edit2"),
#path("config/list/", views.config_list_view, name="experiment-list"),
#path("config/list/<int:session_id>/<int:experiment_id>/", views.config_list_view, name="experiment-list"),
#path("config/edit/<int:pk>/", views.config_edit_view, name="experiment-edit"),
#path("config/edit/<int:pk>/<int:session_id>/<int:experiment_id>/", views.config_edit_view, name="experiment-edit"),
# Import / export # Import / export
path("import/", views.ImportParamsView.as_view(), name="import-params"), #path("import/", views.ImportParamsView.as_view(), name="import-params"),
path("export/", views.ExportCsvView.as_view(), name="export-csv"), #path("export/", views.ExportCsvView.as_view(), name="export-csv-view"),
#path("import/", views.ImportParamsView.as_view(), name="import-params"),
path("export/csv/", views.export_csv_view, name="export-csv"),
path("export/csv/<int:session_id>/<int:experiment_id>/", views.export_csv_view, name="export-csv"),
# API JSON pour le front-end # API JSON pour le front-end
path("api/tracking/", views.TrackingDataView.as_view(), name="tracking-data-api"), path("api/tracking/", views.TrackingDataView.as_view(), name="tracking-data-api"),
+85 -145
View File
@@ -9,9 +9,15 @@ from django.contrib import messages
from django.http import HttpResponse, JsonResponse from django.http import HttpResponse, JsonResponse
from django.shortcuts import get_object_or_404, redirect #, render from django.shortcuts import get_object_or_404, redirect #, render
from django.utils.translation import gettext_lazy as _ from django.utils.translation import gettext_lazy as _
from django.shortcuts import render #, redirect
from django.views.decorators.http import require_GET, require_POST
from django.views.decorators.csrf import csrf_exempt
from django.contrib.auth.decorators import login_required, user_passes_test
from django.views import View from django.views import View
from django.views.generic import FormView, ListView from django.views.generic import FormView, ListView
from django.views.decorators.http import require_GET
from .forms import CsvImportForm, ExperimentConfigForm, ExportCsvForm from .forms import CsvImportForm, ExperimentConfigForm, ExportCsvForm
from .models import ExperimentConfig from .models import ExperimentConfig
@@ -23,10 +29,13 @@ from scanner import models
logger = logging.getLogger(__name__) logger = logging.getLogger(__name__)
start_background_updater() start_background_updater()
def is_staff_or_admin(user):
return user.is_staff or user.is_superuser
@require_GET @require_GET
def stats_view(request): def stats_view(request):
""" """
@@ -45,7 +54,6 @@ def _get_reduct_client() -> ReductStoreClient:
def global_context(request, **ctx): def global_context(request, **ctx):
default_multiwell = models.MultiWell.objects.filter(default=True).first()
conf = ScannerConstants().get() conf = ScannerConstants().get()
return dict( return dict(
app_title=settings.APP_TITLE, app_title=settings.APP_TITLE,
@@ -54,10 +62,6 @@ def global_context(request, **ctx):
local_ip_server=settings.LOCAL_IP_SERVER, local_ip_server=settings.LOCAL_IP_SERVER,
host_port=settings.SERVER_HOST_PORT, host_port=settings.SERVER_HOST_PORT,
conf=conf, conf=conf,
default_position = default_multiwell.position or 'HD',
export_destination=settings.EXPORT_DESTINATIONS,
well_choices = models.Well.objects.order_by('name').all(),
**ctx **ctx
) )
@@ -78,104 +82,104 @@ def get_active_experiments(session, expid=None):
return [], None return [], None
def get_experiment_config(request): def get_active_session(request, session_id=None, experiment_id=None):
cursid = request.POST.get('_sid') cursid = session_id or request.POST.get('_sid')
expid = request.POST.get('_expid') expid = experiment_id or request.POST.get('_expid')
print(request.POST)
current_session = models.Session.get_session(cursid) current_session = models.Session.get_session(cursid)
experiments, current_experiment = get_active_experiments(current_session, expid) experiments, current_experiment = get_active_experiments(current_session, expid)
qs = ExperimentConfig.objects
if not current_session:
qs = qs.filter(experiment__session_experiments__isnull=False).select_related()
elif current_experiment:
qs = qs.filter(experiment_id=current_experiment.id)
context = dict( context = dict(
current_session = current_session, current_session = current_session,
current_experiment = current_experiment, current_experiment = current_experiment,
experiments=experiments or [], experiments=experiments or [],
sessions=models.Session.objects.filter(active=True).all(), sessions=models.Session.objects.filter(active=True).all(),
well_choices=models.Well.objects.order_by('name').all(),
) )
return qs.all(), context return context
# --------------------------------------------------------------------------- # ---------------------------------------------------------------------------
# Vue : liste des configurations # Vue :Export CSV depuis ReductStore
# --------------------------------------------------------------------------- # ---------------------------------------------------------------------------
def export_csv(request):
d = request.POST
class ExperimentConfigListView(ListView): @async_to_sync
"""Liste toutes les configurations expériences.""" async def _do_export():
client = _get_reduct_client()
await client.connect()
try:
csv_content, n = await client.export_csv_response(
experiment = d.get("experiment"),
well = d.get("well"),
planarian = d.get("planarian"),
record_type = d.get("record_type"),
start = d.get("start_dt"),
stop = d.get("stop_dt"),
)
print(f"Export CSV: export_csv_response done, {n} lignes, content size={len(csv_content)}, {csv_content}")
except Exception as e:
logger.error(f"Erreur export CSV: {e}")
messages.error(request, _("Erreur lors de l'export CSV: %(error)s") % {"error": str(e)})
return None, 0
return csv_content, n
model = ExperimentConfig csv_content, n = _do_export()
template_name = "planarian/experiment_list.html"
context_object_name = "configs"
ordering = ["-created_at"]
def get_queryset(self): logger.info(f"Export CSV: {n} lignes, content size={len(csv_content)}")
qs, self.config_context = get_experiment_config(self.request) if not csv_content:
return qs messages.warning(request, _("Aucune donnée trouvée."))
return None
def get(self, request, *args, **kwargs): filename = (
return super().get(request, *args, **kwargs) f"{d['experiment']}_{d['well']}_planaire{d['planarian']}"
f"_{d['record_type']}.csv"
def post(self, request, *args, **kwargs): )
return super().get(request, *args, **kwargs) response = HttpResponse(csv_content, content_type="text/csv; charset=utf-8")
response["Content-Disposition"] = f'attachment; filename="{filename}"'
def get_context_data(self, **kwargs): messages.success(request, _("%(n)d lignes exportées.") % {"n": n})
context = super().get_context_data(**kwargs) return response
context.update(self.config_context)
return global_context(self.request, **context)
# ---------------------------------------------------------------------------
# Vue : création / modification d'une configuration
# ---------------------------------------------------------------------------
class ExperimentConfigFormView(FormView):
"""Formulaire de saisie des paramètres d'une expérience."""
template_name = "planarian/experiment_form.html"
form_class = ExperimentConfigForm
def get_queryset(self): @login_required
qs, self.config_context = get_experiment_config(self.request) def export_csv_view(request, session_id=None, experiment_id=None):
return qs session_context = get_active_session(request, session_id, experiment_id)
def get_form(self, form_class=None): if request.method == 'POST':
pk = self.kwargs.get("pk") valid = request.POST.get('valid')
if pk: if valid == 'ok':
instance = get_object_or_404(ExperimentConfig, pk=pk) export_csv(request)
return ExperimentConfigForm(self.request.POST or None, instance=instance)
return ExperimentConfigForm(self.request.POST or None)
def form_valid(self, form): ctx = {
form.save() 'choice_title': _("Export vers un fichier CSV depuis ReductStore"),
messages.success(self.request, _("Configuration sauvegardée.")) 'well': 'A1',
return redirect("planarian:experiment-list") 'planarian': "0",
'record_type': 'frame',
**session_context
}
def form_invalid(self, form): return render(request, "planarian/export_csv.html", context=global_context(request, **ctx))
print(f"Form validation failed: {form.errors}")
messages.error(self.request, form.errors)
return super().form_invalid(form)
def post(self, request, *args, **kwargs):
print(f"Received POST data: {request.POST}")
return super().post(request, *args, **kwargs)
def get_context_data(self, **kwargs):
context = super().get_context_data(**kwargs)
context['is_creation'] = 'pk' not in self.kwargs
context['is_update'] = 'pk' in self.kwargs
return global_context(self.request, choice_title=_("Paramètres d'une expérience"), **context)
# --------------------------------------------------------------------------- # ---------------------------------------------------------------------------
# Vue : import CSV de paramètres # Vue : import CSV de paramètres
# --------------------------------------------------------------------------- # ---------------------------------------------------------------------------
@login_required
def import_csv_view(request, session_id=None, experiment_id=None):
"""
Import de configurations d'expérience depuis un fichier CSV.
Une ligne CSV = un puits = un ExperimentConfig.
Colonnes CSV obligatoires : experiment, well, px_per_mm, fps
Toutes les autres colonnes correspondent aux champs du modèle.
"""
ctx = {
'choice_title': _("Importer des configurations depuis un fichier CSV"),
}
return render(request, "planarian/import_params.html", context=global_context(request, **ctx))
class ImportParamsView(FormView): class ImportParamsView(FormView):
""" """
@@ -189,9 +193,6 @@ class ImportParamsView(FormView):
template_name = "planarian/import_params.html" template_name = "planarian/import_params.html"
form_class = CsvImportForm form_class = CsvImportForm
def get_queryset(self):
qs, self.config_context = get_experiment_config(self.request)
return qs
def form_valid(self, form): def form_valid(self, form):
rows = form.csv_rows rows = form.csv_rows
@@ -233,68 +234,7 @@ class ImportParamsView(FormView):
def get_context_data(self, **kwargs): def get_context_data(self, **kwargs):
context = super().get_context_data(**kwargs) context = super().get_context_data(**kwargs)
return global_context(self.request, choice_title=_("configurations d'expérience depuis un fichier CSV"), **context) return global_context(self.request, choice_title=_("Importer des configurations depuis un fichier CSV"), **context)
# ---------------------------------------------------------------------------
# Vue : export CSV depuis ReductStore
# ---------------------------------------------------------------------------
class ExportCsvView(FormView):
"""
Export des données de tracking depuis ReductStore vers un fichier CSV.
Retourne le fichier en téléchargement HTTP.
"""
template_name = "planarian/export_csv.html"
form_class = ExportCsvForm
def form_valid(self, form):
d = form.cleaned_data
@async_to_sync
async def _do_export():
client = _get_reduct_client()
await client.connect()
try:
csv_content, n = await client.export_csv_response(
experiment = d["experiment"],
well = d["well"],
planarian = d["planarian"],
record_type = d["record_type"],
start = d.get("start_dt"),
stop = d.get("stop_dt"),
)
print(f"Export CSV: export_csv_response done, {n} lignes, content size={len(csv_content)}, {csv_content}")
except Exception as e:
logger.error(f"Erreur export CSV: {e}")
messages.error(self.request, _("Erreur lors de l'export CSV: %(error)s") % {"error": str(e)})
return None, 0
return csv_content, n
csv_content, n = _do_export()
print(f"Export CSV: {n} lignes, content size={len(csv_content)}")
if not csv_content:
messages.warning(self.request, _("Aucune donnée trouvée."))
return self.form_invalid(form)
filename = (
f"{d['experiment']}_{d['well']}_planaire{d['planarian']}"
f"_{d['record_type']}.csv"
)
response = HttpResponse(csv_content, content_type="text/csv; charset=utf-8")
response["Content-Disposition"] = f'attachment; filename="{filename}"'
messages.success(self.request, _("%(n)d lignes exportées.") % {"n": n})
return response
def get_context_data(self, **kwargs):
context = super().get_context_data(**kwargs)
qs, config_context = get_experiment_config(self.request)
context.update(config_context)
return global_context(self.request, choice_title=_("Tracking depuis ReductStore vers un fichier CSV"), **context)
# --------------------------------------------------------------------------- # ---------------------------------------------------------------------------
@@ -337,5 +277,5 @@ class TrackingDataView(View):
def get_context_data(self, **kwargs): def get_context_data(self, **kwargs):
context = super().get_context_data(**kwargs) context = super().get_context_data(**kwargs)
return global_context(self.request, choice_title=_("Métriques de tracking d'un planaire"), **context) return global_context(self.request, choice_title=str(_("Métriques de tracking d'un planaire")), **context)
@@ -99,20 +99,20 @@
<i class="fa-solid fa-gear w3-text-purple w3-xlarge"></i> {% trans "Création de sessions d'expériences" %} <i class="fa-solid fa-gear w3-text-purple w3-xlarge"></i> {% trans "Création de sessions d'expériences" %}
</a> </a>
<hr class="w3-bar-item divider w3-grey"> <hr class="w3-bar-item divider w3-grey">
<a href="{% url 'scanner:experimentconfig_view' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-gears w3-text-pink w3-xlarge"></i> {% trans "Configuration des expériences" %}
</a>
<a href="{% url 'scanner:experiment_view' %}" class="w3-bar-item w3-btn w3-hover-opacity"> <a href="{% url 'scanner:experiment_view' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-gear w3-text-pink w3-xlarge"></i> {% trans "Gestions des expériences" %} <i class="fa-solid fa-gear w3-text-pink w3-xlarge"></i> {% trans "Gestions des expériences" %}
</a> </a>
<a href="{% url 'scanner:experimentconfig_view' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-gears w3-text-pink w3-xlarge"></i> {% trans "Configuration des expériences" %}
</a>
<a href="{% url 'scanner:calibration' %}" class="w3-bar-item w3-btn w3-hover-opacity"> <a href="{% url 'scanner:calibration' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-wrench w3-text-red w3-xlarge"></i> {% trans "Calibration" %} <i class="fa-solid fa-wrench w3-text-orange w3-xlarge"></i> {% trans "Calibration" %}
</a> </a>
<hr class="w3-bar-item divider w3-grey w3-margin-bottom"> <hr class="w3-bar-item divider w3-grey w3-margin-bottom">
{% endif %} {% endif %}
{% if conf.tracking %} {% if conf.tracking %}
<a href="{% url 'planarian:experiment-list' %}" class="w3-bar-item w3-btn w3-hover-opacity"> <a href="{% url 'planarian:export-csv' %}" class="w3-bar-item w3-btn w3-hover-opacity">
<i class="fa-solid fa-vials w3-text-lime w3-xlarge"></i> {% trans "Préparation des expériences" %} <i class="fa-solid fa-vials w3-text-lime w3-xlarge"></i> {% trans "Export CSV des expériences" %}
</a> </a>
{% endif %} {% endif %}
<a href="{% url 'scanner:scanning' %}" class="w3-bar-item w3-btn w3-hover-opacity"> <a href="{% url 'scanner:scanning' %}" class="w3-bar-item w3-btn w3-hover-opacity">